Wall clock time and date at job start Tue Mar 31 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47091 * 300.00129 * 3 2 1 6 6 H 1.48507 * 109.47352 * 59.99773 * 3 2 1 7 7 C 1.38945 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99703 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00476 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99686 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47374 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00010 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49812 * 324.93245 * 14 13 12 16 16 C 1.53041 * 109.50179 * 85.00114 * 14 13 12 17 17 C 1.53039 * 109.54075 * 181.34441 * 16 14 13 18 18 C 1.53184 * 109.31566 * 298.63562 * 17 16 14 19 19 N 1.46933 * 108.77570 * 54.63254 * 18 17 16 20 20 C 1.34773 * 120.63093 * 126.36796 * 19 18 17 21 21 O 1.21275 * 120.00143 * 180.02562 * 20 19 18 22 22 C 1.50703 * 120.00017 * 0.02562 * 20 19 18 23 23 H 1.08998 * 110.49022 * 42.69921 * 22 20 19 24 24 C 1.54101 * 110.54761 * 279.99977 * 22 20 19 25 25 N 1.47059 * 103.86340 * 241.26032 * 24 22 20 26 26 C 1.33945 * 109.17525 * 0.02562 * 25 24 22 27 27 O 1.21593 * 123.03898 * 179.97438 * 26 25 24 28 28 N 1.33952 * 113.92024 * 0.26896 * 26 25 24 29 29 C 1.46925 * 118.73672 * 306.64608 * 19 18 17 30 30 H 0.97002 * 119.99561 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00035 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46956 * 59.99690 * 12 10 9 33 33 H 1.08999 * 109.47659 * 300.00451 * 12 10 9 34 34 H 1.00899 * 110.99591 * 56.04516 * 13 12 10 35 35 H 1.09007 * 109.45627 * 61.32738 * 16 14 13 36 36 H 1.08998 * 109.45880 * 301.36793 * 16 14 13 37 37 H 1.08995 * 109.49485 * 178.68129 * 17 16 14 38 38 H 1.08999 * 109.51856 * 58.60603 * 17 16 14 39 39 H 1.09002 * 109.58624 * 294.84960 * 18 17 16 40 40 H 1.08990 * 109.59014 * 174.41924 * 18 17 16 41 41 H 1.09002 * 110.55011 * 122.66827 * 24 22 20 42 42 H 1.09008 * 110.54985 * 359.85465 * 24 22 20 43 43 H 0.96997 * 125.41018 * 180.02562 * 25 24 22 44 44 H 0.96993 * 125.40937 * 179.73433 * 28 26 25 45 45 H 1.08999 * 109.58521 * 173.14499 * 29 19 18 46 46 H 1.09002 * 109.58859 * 293.56156 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 1.4980 -7.2708 0.0003 15 1 0.5855 -7.1898 0.5911 16 6 1.1433 -7.6595 -1.4368 17 6 0.3841 -8.9884 -1.4350 18 6 1.2793 -10.0826 -0.8452 19 7 1.7429 -9.6507 0.4805 20 6 1.5630 -10.4366 1.5605 21 8 1.9497 -10.0686 2.6495 22 6 0.8811 -11.7726 1.4150 23 1 1.2412 -12.2899 0.5258 24 6 -0.6485 -11.5956 1.3557 25 7 -1.1351 -12.3395 2.5272 26 6 -0.0904 -12.8692 3.1770 27 8 -0.2068 -13.5367 4.1866 28 7 1.0946 -12.5919 2.6174 29 6 2.4008 -8.3431 0.6074 30 1 -0.4849 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6167 -4.9208 -0.8886 33 1 0.6174 -4.9205 0.8913 34 1 2.8338 -5.9124 0.7813 35 1 2.0577 -7.7645 -2.0207 36 1 0.5174 -6.8843 -1.8787 37 1 0.1115 -9.2528 -2.4567 38 1 -0.5181 -8.8915 -0.8312 39 1 2.1374 -10.2438 -1.4977 40 1 0.7110 -11.0077 -0.7500 41 1 -1.0480 -12.0251 0.4369 42 1 -0.9151 -10.5415 1.4340 43 1 -2.0648 -12.4319 2.7880 44 1 1.9564 -12.8871 2.9507 45 1 2.5723 -8.1211 1.6607 46 1 3.3523 -8.3597 0.0759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209315256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:56 Heat of formation + Delta-G solvation = -75.327591 kcal Electronic energy + Delta-G solvation = -29443.398932 eV Core-core repulsion = 25175.515448 eV Total energy + Delta-G solvation = -4267.883484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87611 -40.20242 -38.53105 -37.78351 -36.60662 -35.29248 -33.90189 -33.47664 -32.58346 -31.31305 -30.83463 -29.27840 -26.44356 -26.02250 -24.36644 -23.64932 -22.86797 -22.22040 -20.87559 -19.66991 -19.19775 -18.39896 -18.06834 -17.92199 -16.78990 -16.45546 -16.33886 -15.95721 -15.46168 -15.38457 -15.03153 -14.88964 -14.65149 -14.39160 -14.35758 -14.09581 -13.86531 -13.81935 -13.59708 -13.43054 -13.17731 -12.81206 -12.56201 -12.30689 -11.97423 -11.58910 -11.53948 -11.27205 -11.14358 -10.97270 -10.87981 -10.74300 -10.58346 -10.36262 -10.25104 -9.84452 -9.54871 -9.35167 -9.09028 -8.51609 -8.17284 -7.99343 -6.44623 -3.85435 1.96234 2.18078 2.46124 2.80778 3.14510 3.25397 3.32639 3.45658 3.66088 3.79991 3.86859 4.00319 4.18244 4.22300 4.44104 4.51967 4.59295 4.64459 4.75470 4.81096 4.93058 5.04626 5.11081 5.14693 5.21571 5.28032 5.39374 5.53106 5.60394 5.68391 5.75764 5.88930 5.93806 5.98877 6.12682 6.25553 6.53220 6.67237 6.85701 6.92277 7.11415 7.52872 7.53349 7.64119 8.03384 8.19259 8.57815 9.15089 9.50940 10.02020 10.73144 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.001939 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.139401 B =14434.970017 C =14717.857829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.053 3.947 13 N -0.661 5.661 14 C 0.075 3.925 15 H 0.045 0.955 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.101 3.899 19 N -0.603 5.603 20 C 0.502 3.498 21 O -0.519 6.519 22 C 0.104 3.896 23 H 0.118 0.882 24 C 0.104 3.896 25 N -0.738 5.738 26 C 0.706 3.294 27 O -0.582 6.582 28 N -0.715 5.715 29 C 0.110 3.890 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.352 0.648 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.434 0.566 44 H 0.435 0.565 45 H 0.092 0.908 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 -25.352 -5.009 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.294 5.294 14 C -0.036 4.036 15 H 0.063 0.937 16 C -0.149 4.149 17 C -0.174 4.174 18 C -0.021 4.021 19 N -0.338 5.338 20 C 0.287 3.713 21 O -0.393 6.393 22 C -0.007 4.007 23 H 0.136 0.864 24 C -0.022 4.022 25 N -0.402 5.402 26 C 0.405 3.595 27 O -0.459 6.459 28 N -0.377 5.377 29 C -0.013 4.013 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.172 0.828 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.276 0.724 44 H 0.278 0.722 45 H 0.111 0.889 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.760 -25.311 -4.561 25.992 hybrid contribution -0.636 0.962 0.846 1.431 sum -4.396 -24.349 -3.715 25.020 Atomic orbital electron populations 1.69622 1.05945 1.28081 1.50654 1.25274 0.95654 0.99771 0.97312 0.85794 0.79724 0.81081 0.77712 1.19193 1.20732 1.20758 1.19755 0.93410 0.82188 1.47460 0.87834 1.41868 1.09200 1.04627 1.64311 1.19776 0.88384 0.84683 0.84584 1.90529 1.13722 1.87036 1.55389 1.21713 0.94277 0.90849 1.01178 1.60095 1.18670 0.99274 1.51355 1.21748 0.95880 0.89471 0.96514 0.93671 1.21565 1.00969 0.95962 0.96439 1.21953 0.98563 0.95250 1.01645 1.21922 0.98933 0.97749 0.83511 1.48069 1.59043 1.18816 1.07829 1.20744 0.80027 0.86228 0.84292 1.90780 1.49507 1.73327 1.25710 1.21878 0.96212 0.91129 0.91488 0.86440 1.22281 0.90170 0.98897 0.90847 1.45053 1.09065 1.56773 1.29313 1.15861 0.81396 0.79774 0.82512 1.91020 1.85268 1.44595 1.25011 1.44843 1.08703 1.55487 1.28680 1.21707 0.95719 0.80812 1.03045 0.91910 0.77479 0.89571 0.93821 0.82806 0.90675 0.91150 0.89999 0.91417 0.90340 0.89926 0.88459 0.89406 0.72410 0.72235 0.88920 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.15 7.82 -10.98 -0.09 10.06 16 11 O -0.58 -15.54 15.78 5.55 0.09 -15.45 16 12 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 13 N -0.66 -9.79 5.94 -108.10 -0.64 -10.43 16 14 C 0.07 0.80 2.63 -67.82 -0.18 0.62 16 15 H 0.05 0.51 7.80 -51.93 -0.41 0.10 16 16 C -0.11 -0.95 5.40 -26.69 -0.14 -1.10 16 17 C -0.14 -0.65 6.08 -26.62 -0.16 -0.82 16 18 C 0.10 0.40 6.19 -3.71 -0.02 0.37 16 19 N -0.60 -4.46 2.98 -173.03 -0.52 -4.97 16 20 C 0.50 4.45 6.82 -10.99 -0.07 4.38 16 21 O -0.52 -7.14 15.97 5.56 0.09 -7.05 16 22 C 0.10 0.57 3.16 -68.20 -0.22 0.36 16 23 H 0.12 0.26 7.02 -51.93 -0.36 -0.11 16 24 C 0.10 0.42 6.95 -3.16 -0.02 0.40 16 25 N -0.74 -5.03 6.37 -64.69 -0.41 -5.44 16 26 C 0.71 7.56 8.92 -88.40 -0.79 6.77 16 27 O -0.58 -8.85 18.05 5.28 0.10 -8.76 16 28 N -0.71 -5.96 5.59 -59.33 -0.33 -6.30 16 29 C 0.11 1.09 5.67 -3.93 -0.02 1.06 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 32 H 0.09 1.31 7.41 -51.93 -0.39 0.92 16 33 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 34 H 0.35 5.55 8.07 -39.29 -0.32 5.23 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.07 0.68 7.42 -51.93 -0.39 0.29 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.08 5.25 -51.93 -0.27 -0.19 16 41 H 0.10 0.07 8.12 -51.93 -0.42 -0.36 16 42 H 0.09 0.39 7.72 -51.92 -0.40 -0.01 16 43 H 0.43 2.21 8.96 -40.82 -0.37 1.84 16 44 H 0.43 3.39 8.96 -40.82 -0.37 3.02 16 45 H 0.09 1.11 7.01 -51.93 -0.36 0.75 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -37.85 376.55 -8.71 -46.56 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.41 Total: 12.93 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: -1.99 Total: 15.05 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -1.23 Total: -64.84 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: 0.27 Total: -31.25 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.85 -8.71 -46.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209315256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.767 kcal (2) G-P(sol) polarization free energy of solvation -37.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds