Wall clock time and date at job start Tue Mar 31 2020 22:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48500 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47091 * 300.00129 * 3 2 1 6 6 H 1.48507 * 109.47352 * 59.99773 * 3 2 1 7 7 C 1.38945 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99703 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00476 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99686 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47374 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00010 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49812 * 324.93245 * 14 13 12 16 16 C 1.53041 * 109.50179 * 85.00114 * 14 13 12 17 17 C 1.53039 * 109.54075 * 181.34441 * 16 14 13 18 18 C 1.53184 * 109.31566 * 298.63562 * 17 16 14 19 19 N 1.46933 * 108.77570 * 54.63254 * 18 17 16 20 20 C 1.34773 * 120.63093 * 126.36796 * 19 18 17 21 21 O 1.21275 * 120.00143 * 180.02562 * 20 19 18 22 22 C 1.50703 * 120.00017 * 0.02562 * 20 19 18 23 23 H 1.08998 * 110.49022 * 42.69921 * 22 20 19 24 24 C 1.54101 * 110.54761 * 279.99977 * 22 20 19 25 25 N 1.47059 * 103.86340 * 241.26032 * 24 22 20 26 26 C 1.33945 * 109.17525 * 0.02562 * 25 24 22 27 27 O 1.21593 * 123.03898 * 179.97438 * 26 25 24 28 28 N 1.33952 * 113.92024 * 0.26896 * 26 25 24 29 29 C 1.46925 * 118.73672 * 306.64608 * 19 18 17 30 30 H 0.97002 * 119.99561 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00035 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46956 * 59.99690 * 12 10 9 33 33 H 1.08999 * 109.47659 * 300.00451 * 12 10 9 34 34 H 1.00899 * 110.99591 * 56.04516 * 13 12 10 35 35 H 1.09007 * 109.45627 * 61.32738 * 16 14 13 36 36 H 1.08998 * 109.45880 * 301.36793 * 16 14 13 37 37 H 1.08995 * 109.49485 * 178.68129 * 17 16 14 38 38 H 1.08999 * 109.51856 * 58.60603 * 17 16 14 39 39 H 1.09002 * 109.58624 * 294.84960 * 18 17 16 40 40 H 1.08990 * 109.59014 * 174.41924 * 18 17 16 41 41 H 1.09002 * 110.55011 * 122.66827 * 24 22 20 42 42 H 1.09008 * 110.54985 * 359.85465 * 24 22 20 43 43 H 0.96997 * 125.41018 * 180.02562 * 25 24 22 44 44 H 0.96993 * 125.40937 * 179.73433 * 28 26 25 45 45 H 1.08999 * 109.58521 * 173.14499 * 29 19 18 46 46 H 1.09002 * 109.58859 * 293.56156 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0004 14 6 1.4980 -7.2708 0.0003 15 1 0.5855 -7.1898 0.5911 16 6 1.1433 -7.6595 -1.4368 17 6 0.3841 -8.9884 -1.4350 18 6 1.2793 -10.0826 -0.8452 19 7 1.7429 -9.6507 0.4805 20 6 1.5630 -10.4366 1.5605 21 8 1.9497 -10.0686 2.6495 22 6 0.8811 -11.7726 1.4150 23 1 1.2412 -12.2899 0.5258 24 6 -0.6485 -11.5956 1.3557 25 7 -1.1351 -12.3395 2.5272 26 6 -0.0904 -12.8692 3.1770 27 8 -0.2068 -13.5367 4.1866 28 7 1.0946 -12.5919 2.6174 29 6 2.4008 -8.3431 0.6074 30 1 -0.4849 0.8401 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6167 -4.9208 -0.8886 33 1 0.6174 -4.9205 0.8913 34 1 2.8338 -5.9124 0.7813 35 1 2.0577 -7.7645 -2.0207 36 1 0.5174 -6.8843 -1.8787 37 1 0.1115 -9.2528 -2.4567 38 1 -0.5181 -8.8915 -0.8312 39 1 2.1374 -10.2438 -1.4977 40 1 0.7110 -11.0077 -0.7500 41 1 -1.0480 -12.0251 0.4369 42 1 -0.9151 -10.5415 1.4340 43 1 -2.0648 -12.4319 2.7880 44 1 1.9564 -12.8871 2.9507 45 1 2.5723 -8.1211 1.6607 46 1 3.3523 -8.3597 0.0759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209315256.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:55 Heat of formation + Delta-G solvation = -110.423567 kcal Electronic energy + Delta-G solvation = -29444.920808 eV Core-core repulsion = 25175.515448 eV Total energy + Delta-G solvation = -4269.405360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.48999 -40.93232 -40.15823 -38.80736 -37.39566 -36.41899 -35.78499 -34.03888 -33.35120 -33.19450 -31.72088 -30.01498 -27.88569 -26.70911 -25.82220 -24.37048 -23.51083 -22.85778 -21.63386 -21.15206 -20.19807 -19.88818 -18.98167 -18.70062 -17.87583 -17.43229 -17.16585 -16.89193 -16.58830 -16.46284 -16.18733 -16.02878 -15.55776 -15.44077 -15.29497 -15.18906 -15.01480 -14.75160 -14.38405 -14.14649 -13.99683 -13.74316 -13.56850 -13.40332 -13.33206 -13.11629 -12.90624 -12.42038 -12.33689 -12.12553 -11.80984 -11.78949 -11.61635 -11.57924 -11.52462 -11.34193 -10.56624 -10.37047 -10.03213 -9.86195 -9.75670 -9.39606 -8.48387 -5.97041 1.33493 1.35638 1.41285 1.54106 1.56024 1.88795 2.02828 2.08100 2.28457 2.89968 3.01189 3.18768 3.24398 3.28956 3.46454 3.79290 3.90156 3.95869 4.08472 4.13779 4.28511 4.29828 4.31294 4.43677 4.54418 4.55286 4.60325 4.67443 4.73312 4.81752 4.87128 5.05494 5.14181 5.29318 5.37547 5.40376 5.52412 5.87532 5.88041 6.07368 6.17239 6.23323 6.30559 6.36069 6.58085 6.99897 7.11075 7.49018 7.54134 8.09328 8.69198 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.001939 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.139401 B =14434.970017 C =14717.857829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.069 3.931 13 N -0.673 5.673 14 C 0.080 3.920 15 H 0.043 0.957 16 C -0.111 4.111 17 C -0.128 4.128 18 C 0.095 3.905 19 N -0.595 5.595 20 C 0.499 3.501 21 O -0.579 6.579 22 C 0.108 3.892 23 H 0.167 0.833 24 C 0.102 3.898 25 N -0.729 5.729 26 C 0.694 3.306 27 O -0.640 6.640 28 N -0.716 5.716 29 C 0.115 3.885 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.440 0.560 44 H 0.434 0.566 45 H 0.064 0.936 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -26.689 -7.469 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.063 4.063 13 N -0.305 5.305 14 C -0.030 4.030 15 H 0.061 0.939 16 C -0.149 4.149 17 C -0.166 4.166 18 C -0.026 4.026 19 N -0.327 5.327 20 C 0.286 3.714 21 O -0.458 6.458 22 C -0.002 4.002 23 H 0.184 0.816 24 C -0.022 4.022 25 N -0.393 5.393 26 C 0.392 3.608 27 O -0.521 6.521 28 N -0.377 5.377 29 C -0.008 4.008 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.143 0.857 41 H 0.168 0.832 42 H 0.106 0.894 43 H 0.284 0.716 44 H 0.276 0.724 45 H 0.082 0.918 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.422 -26.647 -7.114 28.108 hybrid contribution -0.107 1.391 1.567 2.098 sum -5.528 -25.256 -5.547 26.442 Atomic orbital electron populations 1.69677 1.06788 1.29256 1.50346 1.26045 0.96579 1.02426 0.96287 0.84870 0.78018 0.77096 0.78349 1.19844 1.19448 1.19694 1.19694 0.92689 0.84019 1.49846 0.90358 1.41935 1.09344 1.04730 1.65009 1.20867 0.88258 0.86168 0.82242 1.90496 1.15865 1.87953 1.56630 1.21542 0.93898 0.87994 1.02882 1.60162 1.18790 1.00540 1.51055 1.21831 0.95295 0.87538 0.98385 0.93882 1.21587 1.01092 0.98142 0.94100 1.21948 0.98186 0.92938 1.03557 1.22306 0.99877 0.99002 0.81395 1.48132 1.58058 1.17366 1.09188 1.21437 0.79252 0.87246 0.83508 1.90766 1.52159 1.74777 1.28116 1.22240 0.97197 0.88900 0.91839 0.81623 1.22675 0.88781 0.99145 0.91640 1.45059 1.08676 1.55834 1.29681 1.16210 0.82662 0.79720 0.82197 1.90966 1.86249 1.47297 1.27630 1.44905 1.08096 1.55181 1.29488 1.21434 0.95927 0.82309 1.01166 0.91274 0.76954 0.87398 0.92220 0.83959 0.91326 0.92170 0.87299 0.90749 0.89096 0.85737 0.83204 0.89364 0.71597 0.72405 0.91753 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 2 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 3 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.22 5.29 -306.98 -1.62 -30.85 16 10 C 0.44 20.60 7.82 87.66 0.69 21.29 16 11 O -0.62 -34.42 15.78 -3.06 -0.05 -34.46 16 12 C 0.07 2.30 5.97 85.56 0.51 2.81 16 13 N -0.67 -20.03 5.94 -495.91 -2.94 -22.98 16 14 C 0.08 1.63 2.63 44.85 0.12 1.75 16 15 H 0.04 0.91 7.80 -2.39 -0.02 0.90 16 16 C -0.11 -1.63 5.40 30.62 0.17 -1.47 16 17 C -0.13 -0.64 6.08 30.67 0.19 -0.46 16 18 C 0.09 0.28 6.19 86.36 0.53 0.81 16 19 N -0.59 -7.34 2.98 -819.75 -2.44 -9.78 16 20 C 0.50 7.96 6.82 87.66 0.60 8.55 16 21 O -0.58 -16.25 15.97 -3.01 -0.05 -16.30 16 22 C 0.11 0.81 3.16 44.51 0.14 0.95 16 23 H 0.17 -0.29 7.02 -2.39 -0.02 -0.30 16 24 C 0.10 0.38 6.95 86.65 0.60 0.98 16 25 N -0.73 -8.28 6.37 -477.31 -3.04 -11.32 16 26 C 0.69 14.39 8.92 179.57 1.60 16.00 16 27 O -0.64 -20.06 18.05 -4.01 -0.07 -20.13 16 28 N -0.72 -11.06 5.59 -460.33 -2.57 -13.63 16 29 C 0.12 2.25 5.67 86.22 0.49 2.73 16 30 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.40 19.12 7.90 -92.71 -0.73 18.38 16 32 H 0.11 3.13 7.41 -2.38 -0.02 3.11 16 33 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 34 H 0.34 11.23 8.07 -89.69 -0.72 10.51 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.02 7.42 -2.39 -0.02 1.00 16 37 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.12 -0.64 5.25 -2.39 -0.01 -0.65 16 41 H 0.15 -0.88 8.12 -2.39 -0.02 -0.90 16 42 H 0.09 0.41 7.72 -2.38 -0.02 0.39 16 43 H 0.44 3.65 8.96 -92.71 -0.83 2.81 16 44 H 0.43 6.67 8.96 -92.71 -0.83 5.84 16 45 H 0.06 1.63 7.01 -2.39 -0.02 1.62 16 46 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -89.00 376.55 -5.61 -94.61 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -2.04 Total: 33.37 kcal Atomic # 6 Polarization: 28.70 SS G_CDS: 6.91 Total: 35.61 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -12.34 Total: -137.57 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: -0.17 Total: -70.89 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -89.00 -5.61 -94.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209315256.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.809 kcal (2) G-P(sol) polarization free energy of solvation -89.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds