Wall clock time and date at job start Tue Mar 31 2020 22:47:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31413 * 1
3 3 Si 1.86800 * 120.00152 * 2 1
4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1
5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1
6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1
7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1
9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1
10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2
11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7
12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7
13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9
14 14 C 1.46896 * 111.00338 * 179.97438 * 13 12 10
15 15 H 1.09008 * 109.49533 * 324.93416 * 14 13 12
16 16 C 1.53044 * 109.50057 * 84.99759 * 14 13 12
17 17 C 1.53033 * 109.53870 * 181.32173 * 16 14 13
18 18 C 1.53196 * 109.31363 * 298.62811 * 17 16 14
19 19 N 1.46928 * 108.76957 * 54.64061 * 18 17 16
20 20 C 1.34772 * 120.63306 * 126.41404 * 19 18 17
21 21 O 1.21285 * 120.00546 * 179.97438 * 20 19 18
22 22 C 1.50702 * 119.99800 * 359.97438 * 20 19 18
23 23 H 1.08999 * 110.49133 * 319.29667 * 22 20 19
24 24 C 1.54104 * 110.55167 * 82.00226 * 22 20 19
25 25 N 1.47052 * 103.86634 * 118.59335 * 24 22 20
26 26 C 1.33948 * 109.18057 * 0.02562 * 25 24 22
27 27 O 1.21584 * 123.04727 * 179.97438 * 26 25 24
28 28 N 1.34267 * 113.95971 * 0.08517 * 26 25 24
29 29 C 1.46929 * 118.74007 * 306.39004 * 19 18 17
30 30 H 0.96999 * 119.99993 * 359.97438 * 1 2 3
31 31 H 0.97001 * 119.99681 * 359.97438 * 9 7 2
32 32 H 1.09003 * 109.47112 * 299.99065 * 12 10 9
33 33 H 1.08993 * 109.47916 * 59.99687 * 12 10 9
34 34 H 1.00898 * 111.00484 * 56.03940 * 13 12 10
35 35 H 1.09000 * 109.45525 * 301.33903 * 16 14 13
36 36 H 1.08997 * 109.45857 * 61.31077 * 16 14 13
37 37 H 1.08996 * 109.50079 * 58.58611 * 17 16 14
38 38 H 1.09007 * 109.49781 * 178.64877 * 17 16 14
39 39 H 1.08997 * 109.58682 * 174.41840 * 18 17 16
40 40 H 1.08990 * 109.58841 * 294.85529 * 18 17 16
41 41 H 1.09001 * 110.54699 * 237.18958 * 24 22 20
42 42 H 1.09001 * 110.54433 * 359.97438 * 24 22 20
43 43 H 0.96992 * 125.41006 * 180.02562 * 25 24 22
44 44 H 0.97000 * 125.58220 * 179.91649 * 28 26 25
45 45 H 1.09006 * 109.58296 * 293.82555 * 29 19 18
46 46 H 1.08999 * 109.59037 * 173.40134 * 29 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2482 1.6177 0.0000
4 1 2.4957 2.0464 -1.4001
5 1 1.4457 2.6526 0.7001
6 1 3.5457 1.4401 0.6999
7 6 2.0089 -1.2034 -0.0005
8 1 1.4689 -2.1387 -0.0005
9 7 3.3799 -1.2034 -0.0011
10 6 4.0537 -2.3706 -0.0072
11 8 3.4473 -3.4211 -0.0072
12 6 5.5607 -2.3705 -0.0141
13 7 6.0504 -3.7555 -0.0194
14 6 7.5188 -3.7948 -0.0267
15 1 7.9020 -2.9625 -0.6173
16 6 8.0400 -3.6856 1.4081
17 6 9.5702 -3.6933 1.3988
18 6 10.0667 -5.0146 0.8034
19 7 9.4543 -5.1967 -0.5197
20 6 10.2193 -5.4325 -1.6039
21 8 9.7017 -5.5815 -2.6907
22 6 11.7179 -5.5112 -1.4660
23 1 12.0790 -4.7430 -0.7823
24 6 12.1438 -6.9106 -0.9811
25 7 12.9853 -7.4211 -2.0737
26 6 13.0562 -6.4988 -3.0424
27 8 13.6904 -6.6608 -4.0670
28 7 12.3657 -5.3777 -2.7795
29 6 7.9920 -5.1172 -0.6384
30 1 -0.4850 0.8400 0.0004
31 1 3.8649 -0.3633 -0.0014
32 1 5.9200 -1.8545 -0.9044
33 1 5.9282 -1.8591 0.8755
34 1 5.6713 -4.2702 -0.8000
35 1 7.6842 -2.7568 1.8539
36 1 7.6763 -4.5313 1.9918
37 1 9.9346 -2.8624 0.7947
38 1 9.9408 -3.5914 2.4188
39 1 11.1516 -4.9854 0.7028
40 1 9.7801 -5.8397 1.4553
41 1 12.7185 -6.8370 -0.0579
42 1 11.2713 -7.5484 -0.8397
43 1 13.4200 -8.2880 -2.0902
44 1 12.3023 -4.6043 -3.3615
45 1 7.5362 -5.9507 -0.1039
46 1 7.7080 -5.1557 -1.6900
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001209315257.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:58
Heat of formation + Delta-G solvation = -105.335665 kcal
Electronic energy + Delta-G solvation = -29370.473685 eV
Core-core repulsion = 25101.288953 eV
Total energy + Delta-G solvation = -4269.184732 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.45584 -40.92910 -40.28634 -38.81258 -37.38380 -36.43657 -35.82437 -34.03262
-33.77161 -33.25709 -31.71562 -30.03576 -27.99464 -26.68426 -25.65708 -24.36679
-23.49726 -22.85039 -21.52505 -21.32667 -20.47389 -20.11220 -18.98351 -18.60618
-17.89001 -17.44993 -17.16921 -17.02952 -16.60907 -16.53696 -16.20236 -15.92372
-15.52096 -15.32196 -15.22030 -15.19021 -14.92748 -14.82398 -14.52838 -14.20934
-14.11938 -13.92506 -13.78099 -13.44276 -13.35475 -13.12949 -12.94661 -12.42681
-12.34069 -11.99260 -11.80174 -11.78344 -11.61365 -11.57651 -11.52745 -11.34362
-10.55591 -10.45929 -10.26555 -9.84615 -9.75031 -9.39868 -8.42356 -6.03576
1.29098 1.31762 1.34836 1.43912 1.59235 1.87517 1.93346 2.08358
2.22134 2.71742 3.00721 3.13713 3.24681 3.29329 3.37379 3.77955
3.87633 3.93804 4.08640 4.13239 4.18158 4.30213 4.32226 4.38924
4.50969 4.54829 4.61061 4.69436 4.73737 4.82350 4.88893 5.05495
5.13756 5.28875 5.36966 5.50916 5.53895 5.88159 5.88885 6.01753
6.17779 6.23840 6.28838 6.36257 6.57899 6.86437 7.00821 7.37797
7.49186 7.94155 8.75200
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.024030 B = 0.001955 C = 0.001924
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1164.920435 B =14317.915889 C =14545.919436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.017 4.017
3 Si 0.966 3.034
4 H -0.259 1.259
5 H -0.274 1.274
6 H -0.229 1.229
7 C -0.329 4.329
8 H 0.055 0.945
9 N -0.590 5.590
10 C 0.448 3.552
11 O -0.614 6.614
12 C 0.065 3.935
13 N -0.676 5.676
14 C 0.080 3.920
15 H 0.046 0.954
16 C -0.111 4.111
17 C -0.129 4.129
18 C 0.094 3.906
19 N -0.594 5.594
20 C 0.499 3.501
21 O -0.580 6.580
22 C 0.107 3.893
23 H 0.165 0.835
24 C 0.104 3.896
25 N -0.729 5.729
26 C 0.693 3.307
27 O -0.639 6.639
28 N -0.718 5.718
29 C 0.114 3.886
30 H 0.279 0.721
31 H 0.390 0.610
32 H 0.071 0.929
33 H 0.117 0.883
34 H 0.342 0.658
35 H 0.062 0.938
36 H 0.069 0.931
37 H 0.069 0.931
38 H 0.107 0.893
39 H 0.125 0.875
40 H 0.096 0.904
41 H 0.150 0.850
42 H 0.090 0.910
43 H 0.441 0.559
44 H 0.433 0.567
45 H 0.082 0.918
46 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 33.279 -6.770 7.794 34.844
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.215 4.215
3 Si 0.785 3.215
4 H -0.184 1.184
5 H -0.199 1.199
6 H -0.152 1.152
7 C -0.458 4.458
8 H 0.073 0.927
9 N -0.232 5.232
10 C 0.236 3.764
11 O -0.498 6.498
12 C -0.067 4.067
13 N -0.309 5.309
14 C -0.030 4.030
15 H 0.064 0.936
16 C -0.149 4.149
17 C -0.167 4.167
18 C -0.027 4.027
19 N -0.327 5.327
20 C 0.285 3.715
21 O -0.459 6.459
22 C -0.003 4.003
23 H 0.182 0.818
24 C -0.021 4.021
25 N -0.392 5.392
26 C 0.392 3.608
27 O -0.521 6.521
28 N -0.379 5.379
29 C -0.009 4.009
30 H 0.089 0.911
31 H 0.225 0.775
32 H 0.089 0.911
33 H 0.135 0.865
34 H 0.161 0.839
35 H 0.081 0.919
36 H 0.087 0.913
37 H 0.088 0.912
38 H 0.126 0.874
39 H 0.143 0.857
40 H 0.114 0.886
41 H 0.167 0.833
42 H 0.109 0.891
43 H 0.284 0.716
44 H 0.275 0.725
45 H 0.100 0.900
46 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 32.665 -7.614 7.440 34.356
hybrid contribution -0.803 1.161 -1.603 2.136
sum 31.862 -6.453 5.837 33.029
Atomic orbital electron populations
1.69806 1.08152 1.29276 1.50187 1.26147 0.96509 1.02801 0.96063
0.85355 0.79586 0.76659 0.79862 1.18364 1.19930 1.15219 1.19004
0.81499 0.94925 1.50416 0.92697 1.42030 1.05825 1.07608 1.67740
1.20963 0.90959 0.83318 0.81183 1.90549 1.71382 1.32777 1.55098
1.21645 0.89528 0.91760 1.03765 1.60158 1.07369 1.12138 1.51248
1.21918 0.86121 0.96603 0.98361 0.93562 1.21590 0.96205 1.02939
0.94189 1.21945 0.93891 0.97538 1.03373 1.22342 0.99907 0.98942
0.81499 1.48139 1.05915 1.69462 1.09187 1.21421 0.90397 0.76091
0.83551 1.90772 1.75363 1.51282 1.28461 1.22248 0.88291 1.02557
0.87176 0.81833 1.22652 0.96508 0.90534 0.92365 1.45041 1.54812
1.19639 1.19681 1.16294 0.79682 0.81670 0.83156 1.90963 1.50266
1.81343 1.29544 1.44998 1.52067 1.18635 1.22165 1.21540 0.80522
0.97676 1.01199 0.91127 0.77469 0.91122 0.86549 0.83886 0.91925
0.91258 0.91239 0.87433 0.85729 0.88626 0.83260 0.89131 0.71558
0.72450 0.89978 0.91742
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.22 13.96 21.66 0.30 -55.92 16
2 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16
3 Si 0.97 38.35 27.74 68.60 1.90 40.26 16
4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16
5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
6 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16
7 C -0.33 -19.25 10.16 84.04 0.85 -18.40 16
8 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16
9 N -0.59 -27.57 5.09 -306.98 -1.56 -29.13 16
10 C 0.45 19.95 7.82 87.66 0.69 20.63 16
11 O -0.61 -33.81 15.78 -3.07 -0.05 -33.86 16
12 C 0.07 1.92 5.97 85.56 0.51 2.43 16
13 N -0.68 -18.61 5.93 -495.18 -2.94 -21.55 16
14 C 0.08 1.47 2.64 44.99 0.12 1.59 16
15 H 0.05 0.87 7.80 -2.38 -0.02 0.85 16
16 C -0.11 -1.43 5.40 30.62 0.17 -1.27 16
17 C -0.13 -0.53 6.08 30.67 0.19 -0.35 16
18 C 0.09 0.15 6.25 86.36 0.54 0.69 16
19 N -0.59 -6.52 2.97 -818.90 -2.43 -8.96 16
20 C 0.50 7.38 6.81 87.66 0.60 7.98 16
21 O -0.58 -15.67 15.99 -3.05 -0.05 -15.72 16
22 C 0.11 0.70 3.16 44.51 0.14 0.84 16
23 H 0.16 -0.40 6.64 -2.39 -0.02 -0.42 16
24 C 0.10 0.24 7.43 86.65 0.64 0.89 16
25 N -0.73 -7.40 6.37 -477.07 -3.04 -10.44 16
26 C 0.69 13.79 8.92 179.47 1.60 15.39 16
27 O -0.64 -19.58 18.05 -3.98 -0.07 -19.65 16
28 N -0.72 -10.55 5.64 -459.88 -2.60 -13.15 16
29 C 0.11 2.05 5.70 86.36 0.49 2.54 16
30 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16
31 H 0.39 14.95 5.76 -92.71 -0.53 14.41 16
32 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16
33 H 0.12 2.80 7.41 -2.39 -0.02 2.78 16
34 H 0.34 10.61 8.06 -89.70 -0.72 9.88 16
35 H 0.06 0.91 7.43 -2.39 -0.02 0.89 16
36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16
38 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16
39 H 0.12 -0.78 5.42 -2.39 -0.01 -0.79 16
40 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16
41 H 0.15 -1.07 8.14 -2.39 -0.02 -1.08 16
42 H 0.09 0.25 7.72 -2.39 -0.02 0.23 16
43 H 0.44 3.05 8.96 -92.71 -0.83 2.22 16
44 H 0.43 6.44 8.96 -92.71 -0.83 5.61 16
45 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16
46 H 0.06 1.54 7.01 -2.39 -0.02 1.53 16
Total: -1.00 -97.34 373.87 -5.44 -102.78
By element:
Atomic # 1 Polarization: 34.72 SS G_CDS: -1.90 Total: 32.81 kcal
Atomic # 6 Polarization: 25.52 SS G_CDS: 7.00 Total: 32.52 kcal
Atomic # 7 Polarization: -126.87 SS G_CDS: -12.27 Total: -139.14 kcal
Atomic # 8 Polarization: -69.06 SS G_CDS: -0.17 Total: -69.23 kcal
Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.26 kcal
Total: -97.34 -5.44 -102.78 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001209315257.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.560 kcal
(2) G-P(sol) polarization free energy of solvation -97.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.776 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.336 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds