Wall clock time and date at job start Tue Mar 31 2020 22:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00323 * 2 1 4 4 H 1.48494 * 109.47322 * 240.00819 * 3 2 1 5 5 H 1.48506 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47189 * 120.00107 * 3 2 1 7 7 C 1.38953 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00210 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99475 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00256 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46894 * 179.97438 * 12 10 9 14 14 C 1.46480 * 111.00077 * 293.95438 * 13 12 10 15 15 C 1.53066 * 108.73583 * 191.10908 * 14 13 12 16 16 C 1.53116 * 108.99639 * 297.15965 * 15 14 13 17 17 H 1.09000 * 113.48771 * 272.05558 * 16 15 14 18 18 C 1.54479 * 111.17719 * 140.42266 * 16 15 14 19 19 N 1.47737 * 85.89767 * 270.38349 * 18 16 15 20 20 C 1.34777 * 134.86542 * 154.43741 * 19 18 16 21 21 O 1.21288 * 120.00091 * 179.97438 * 20 19 18 22 22 C 1.50703 * 119.99881 * 359.95280 * 20 19 18 23 23 N 1.46497 * 109.46944 * 180.02562 * 22 20 19 24 24 C 1.34781 * 120.00131 * 179.97438 * 23 22 20 25 25 N 1.34772 * 120.00335 * 180.02562 * 24 23 22 26 26 O 1.21587 * 119.99372 * 359.97438 * 24 23 22 27 27 C 1.46985 * 90.27122 * 334.40250 * 19 18 16 28 28 H 1.09004 * 111.86652 * 274.06236 * 27 19 18 29 29 C 1.45459 * 111.00192 * 60.32433 * 13 12 10 30 30 H 0.96994 * 119.99544 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00509 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46814 * 60.00022 * 12 10 9 33 33 H 1.09000 * 109.47332 * 299.99931 * 12 10 9 34 34 H 1.09001 * 109.59673 * 71.33557 * 14 13 12 35 35 H 1.08998 * 109.71738 * 310.95627 * 14 13 12 36 36 H 1.08995 * 109.55059 * 57.01821 * 15 14 13 37 37 H 1.09003 * 109.54620 * 177.30994 * 15 14 13 38 38 H 1.08997 * 113.80952 * 24.62642 * 18 16 15 39 39 H 1.09006 * 113.80508 * 156.02102 * 18 16 15 40 40 H 1.09006 * 109.46901 * 299.99929 * 22 20 19 41 41 H 1.08999 * 109.47387 * 60.00128 * 22 20 19 42 42 H 0.97004 * 120.00575 * 359.97438 * 23 22 20 43 43 H 0.97001 * 119.99824 * 359.97438 * 25 24 23 44 44 H 0.97002 * 120.00287 * 180.02562 * 25 24 23 45 45 H 1.09005 * 108.49381 * 307.17466 * 29 13 12 46 46 H 1.09001 * 108.50146 * 64.62447 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9795 -0.0007 14 6 2.9605 -6.0177 -1.2510 15 6 3.7283 -7.3402 -1.3186 16 6 4.7291 -7.3952 -0.1612 17 1 5.6939 -6.9474 -0.3994 18 6 4.7976 -8.8120 0.4506 19 7 3.7130 -8.3621 1.3471 20 6 2.7280 -8.9773 2.0311 21 8 1.9611 -8.3256 2.7081 22 6 2.5792 -10.4750 1.9543 23 7 1.4438 -10.8958 2.7789 24 6 1.1188 -12.2012 2.8626 25 7 0.0740 -12.5883 3.6207 26 8 1.7677 -13.0294 2.2532 27 6 4.1499 -6.9678 1.1875 28 1 4.9376 -6.7058 1.8940 29 6 3.0491 -5.9388 1.1785 30 1 -0.4849 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6167 -4.9209 -0.8897 33 1 0.6174 -4.9205 0.8903 34 1 3.6637 -5.1852 -1.2761 35 1 2.2796 -5.9466 -2.0991 36 1 3.0292 -8.1724 -1.2362 37 1 4.2629 -7.4034 -2.2664 38 1 4.4998 -9.6032 -0.2374 39 1 5.7354 -9.0248 0.9638 40 1 2.4055 -10.7703 0.9195 41 1 3.4898 -10.9499 2.3197 42 1 0.9259 -10.2351 3.2648 43 1 -0.4439 -11.9275 4.1066 44 1 -0.1598 -13.5278 3.6812 45 1 3.5003 -4.9488 1.2453 46 1 2.4261 -6.0911 2.0599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221259404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:24 Heat of formation + Delta-G solvation = -48.560344 kcal Electronic energy + Delta-G solvation = -30150.653858 eV Core-core repulsion = 25883.931089 eV Total energy + Delta-G solvation = -4266.722769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16209 -40.06786 -38.86928 -38.05402 -35.77289 -34.54714 -33.86279 -33.76870 -31.95881 -31.33069 -30.16039 -28.66353 -27.06405 -25.86444 -24.05694 -23.56376 -21.72759 -21.39083 -20.40782 -19.34266 -18.90430 -18.09772 -17.77530 -17.56750 -16.73160 -16.41614 -15.99990 -15.87845 -15.75629 -15.04331 -14.86545 -14.63282 -14.49180 -14.27321 -14.03226 -13.94792 -13.69782 -13.38884 -13.11047 -12.84659 -12.70940 -12.32178 -12.20743 -11.76851 -11.59240 -11.34343 -11.21099 -11.10380 -10.76971 -10.62070 -10.55669 -10.48858 -10.28114 -10.19256 -9.99748 -9.64811 -9.47995 -9.35143 -9.14670 -8.70264 -8.02436 -7.31877 -6.47413 -3.89048 2.34534 2.54773 2.94672 2.95548 3.14343 3.21446 3.25262 3.80646 4.10313 4.13419 4.17465 4.25437 4.42547 4.73148 4.88871 5.02392 5.11180 5.12591 5.18201 5.21403 5.26148 5.35250 5.45613 5.54181 5.69655 5.72508 5.86499 5.99055 6.06463 6.09017 6.12419 6.17598 6.25912 6.34770 6.42321 6.55547 6.63019 6.67842 7.42179 7.48421 7.58218 7.66166 7.71659 7.98597 8.05565 8.34363 8.53261 9.10197 9.47143 9.97200 10.68888 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002401 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.893330 B =11659.649152 C =12512.245439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.102 0.898 9 N -0.555 5.555 10 C 0.406 3.594 11 O -0.595 6.595 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.047 3.953 15 C -0.093 4.093 16 C -0.115 4.115 17 H 0.098 0.902 18 C 0.097 3.903 19 N -0.629 5.629 20 C 0.535 3.465 21 O -0.533 6.533 22 C 0.126 3.874 23 N -0.732 5.732 24 C 0.709 3.291 25 N -0.866 5.866 26 O -0.599 6.599 27 C 0.156 3.844 28 H 0.089 0.911 29 C 0.032 3.968 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.409 0.591 43 H 0.399 0.601 44 H 0.415 0.585 45 H 0.090 0.910 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -20.321 2.648 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.190 5.190 10 C 0.192 3.808 11 O -0.483 6.483 12 C -0.084 4.084 13 N -0.235 5.235 14 C -0.081 4.081 15 C -0.131 4.131 16 C -0.134 4.134 17 H 0.116 0.884 18 C -0.026 4.026 19 N -0.365 5.365 20 C 0.323 3.677 21 O -0.410 6.410 22 C -0.002 4.002 23 N -0.392 5.392 24 C 0.407 3.593 25 N -0.434 5.434 26 O -0.478 6.478 27 C 0.053 3.947 28 H 0.106 0.894 29 C -0.096 4.096 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.247 0.753 43 H 0.227 0.773 44 H 0.247 0.753 45 H 0.107 0.893 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.080 -20.889 2.582 21.440 hybrid contribution -0.364 1.823 0.532 1.934 sum 3.716 -19.065 3.115 19.672 Atomic orbital electron populations 1.69603 1.05972 1.28426 1.49832 1.25298 0.95629 0.99840 0.97064 0.85921 0.78805 0.80453 0.79061 1.19883 1.20906 1.19887 1.19656 0.93331 0.82404 1.47893 0.88020 1.42068 1.09353 1.04950 1.62650 1.21131 0.88835 0.85972 0.84850 1.90384 1.13938 1.86938 1.57048 1.21982 0.95279 0.87760 1.03415 1.61224 1.19182 1.40947 1.02110 1.22040 0.97314 0.97063 0.91714 1.21419 0.96645 0.98911 0.96151 1.23000 1.00106 0.95030 0.95271 0.88432 1.23561 0.89958 0.98075 0.90970 1.49851 1.28900 1.10156 1.47583 1.19927 0.80342 0.88975 0.78417 1.90693 1.43096 1.66479 1.40745 1.20789 0.90429 0.91820 0.97170 1.44723 1.34588 1.06883 1.52992 1.15829 0.81035 0.82456 0.79960 1.42921 1.34069 1.12807 1.53590 1.90968 1.54847 1.51688 1.50314 1.22073 0.95282 0.81871 0.95436 0.89354 1.21592 0.94762 0.99448 0.93824 0.91686 0.77351 0.89396 0.89414 0.91429 0.91533 0.91396 0.91314 0.89714 0.89537 0.88737 0.88931 0.75336 0.77305 0.75285 0.89262 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 9 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 10 C 0.41 9.16 7.14 -10.98 -0.08 9.08 16 11 O -0.60 -14.70 11.39 5.54 0.06 -14.64 16 12 C 0.05 0.85 5.82 -4.98 -0.03 0.82 16 13 N -0.51 -8.51 4.75 -239.06 -1.14 -9.64 16 14 C 0.05 0.71 5.00 -4.02 -0.02 0.69 16 15 C -0.09 -1.07 5.72 -26.64 -0.15 -1.22 16 16 C -0.11 -1.19 4.44 -89.91 -0.40 -1.59 16 17 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 18 C 0.10 0.78 7.97 -2.88 -0.02 0.76 16 19 N -0.63 -7.27 3.37 -173.24 -0.58 -7.86 16 20 C 0.53 6.79 8.05 -10.98 -0.09 6.70 16 21 O -0.53 -8.50 14.91 5.55 0.08 -8.42 16 22 C 0.13 1.31 5.93 -5.19 -0.03 1.28 16 23 N -0.73 -7.51 5.53 -66.41 -0.37 -7.87 16 24 C 0.71 7.71 8.84 -86.92 -0.77 6.94 16 25 N -0.87 -5.65 8.88 27.63 0.25 -5.40 16 26 O -0.60 -8.83 17.18 5.29 0.09 -8.74 16 27 C 0.16 2.03 4.29 -69.18 -0.30 1.73 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 C 0.03 0.54 4.78 -5.76 -0.03 0.51 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.09 1.44 8.00 -51.93 -0.42 1.03 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.07 1.24 6.15 -51.93 -0.32 0.92 16 35 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 36 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.57 7.95 -51.93 -0.41 0.15 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.41 3.99 7.45 -40.82 -0.30 3.69 16 43 H 0.40 1.61 8.84 -40.82 -0.36 1.24 16 44 H 0.42 2.16 8.93 -40.82 -0.36 1.79 16 45 H 0.09 1.79 5.12 -51.93 -0.27 1.53 16 46 H 0.08 1.49 6.84 -51.93 -0.36 1.14 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -34.54 373.70 -8.89 -43.43 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -6.40 Total: 17.22 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: -2.16 Total: 17.84 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -1.18 Total: -68.05 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: 0.24 Total: -31.80 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.54 -8.89 -43.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221259404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.132 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds