Wall clock time and date at job start Tue Mar 31 2020 22:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00323 * 2 1 4 4 H 1.48494 * 109.47322 * 240.00819 * 3 2 1 5 5 H 1.48506 * 109.46824 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47189 * 120.00107 * 3 2 1 7 7 C 1.38953 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00210 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99475 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00256 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.46894 * 179.97438 * 12 10 9 14 14 C 1.46480 * 111.00077 * 293.95438 * 13 12 10 15 15 C 1.53066 * 108.73583 * 191.10908 * 14 13 12 16 16 C 1.53116 * 108.99639 * 297.15965 * 15 14 13 17 17 H 1.09000 * 113.48771 * 272.05558 * 16 15 14 18 18 C 1.54479 * 111.17719 * 140.42266 * 16 15 14 19 19 N 1.47737 * 85.89767 * 270.38349 * 18 16 15 20 20 C 1.34777 * 134.86542 * 154.43741 * 19 18 16 21 21 O 1.21288 * 120.00091 * 179.97438 * 20 19 18 22 22 C 1.50703 * 119.99881 * 359.95280 * 20 19 18 23 23 N 1.46497 * 109.46944 * 180.02562 * 22 20 19 24 24 C 1.34781 * 120.00131 * 179.97438 * 23 22 20 25 25 N 1.34772 * 120.00335 * 180.02562 * 24 23 22 26 26 O 1.21587 * 119.99372 * 359.97438 * 24 23 22 27 27 C 1.46985 * 90.27122 * 334.40250 * 19 18 16 28 28 H 1.09004 * 111.86652 * 274.06236 * 27 19 18 29 29 C 1.45459 * 111.00192 * 60.32433 * 13 12 10 30 30 H 0.96994 * 119.99544 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00509 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46814 * 60.00022 * 12 10 9 33 33 H 1.09000 * 109.47332 * 299.99931 * 12 10 9 34 34 H 1.09001 * 109.59673 * 71.33557 * 14 13 12 35 35 H 1.08998 * 109.71738 * 310.95627 * 14 13 12 36 36 H 1.08995 * 109.55059 * 57.01821 * 15 14 13 37 37 H 1.09003 * 109.54620 * 177.30994 * 15 14 13 38 38 H 1.08997 * 113.80952 * 24.62642 * 18 16 15 39 39 H 1.09006 * 113.80508 * 156.02102 * 18 16 15 40 40 H 1.09006 * 109.46901 * 299.99929 * 22 20 19 41 41 H 1.08999 * 109.47387 * 60.00128 * 22 20 19 42 42 H 0.97004 * 120.00575 * 359.97438 * 23 22 20 43 43 H 0.97001 * 119.99824 * 359.97438 * 25 24 23 44 44 H 0.97002 * 120.00287 * 180.02562 * 25 24 23 45 45 H 1.09005 * 108.49381 * 307.17466 * 29 13 12 46 46 H 1.09001 * 108.50146 * 64.62447 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1984 -5.9795 -0.0007 14 6 2.9605 -6.0177 -1.2510 15 6 3.7283 -7.3402 -1.3186 16 6 4.7291 -7.3952 -0.1612 17 1 5.6939 -6.9474 -0.3994 18 6 4.7976 -8.8120 0.4506 19 7 3.7130 -8.3621 1.3471 20 6 2.7280 -8.9773 2.0311 21 8 1.9611 -8.3256 2.7081 22 6 2.5792 -10.4750 1.9543 23 7 1.4438 -10.8958 2.7789 24 6 1.1188 -12.2012 2.8626 25 7 0.0740 -12.5883 3.6207 26 8 1.7677 -13.0294 2.2532 27 6 4.1499 -6.9678 1.1875 28 1 4.9376 -6.7058 1.8940 29 6 3.0491 -5.9388 1.1785 30 1 -0.4849 0.8400 0.0004 31 1 0.3534 -2.3907 -0.0005 32 1 0.6167 -4.9209 -0.8897 33 1 0.6174 -4.9205 0.8903 34 1 3.6637 -5.1852 -1.2761 35 1 2.2796 -5.9466 -2.0991 36 1 3.0292 -8.1724 -1.2362 37 1 4.2629 -7.4034 -2.2664 38 1 4.4998 -9.6032 -0.2374 39 1 5.7354 -9.0248 0.9638 40 1 2.4055 -10.7703 0.9195 41 1 3.4898 -10.9499 2.3197 42 1 0.9259 -10.2351 3.2648 43 1 -0.4439 -11.9275 4.1066 44 1 -0.1598 -13.5278 3.6812 45 1 3.5003 -4.9488 1.2453 46 1 2.4261 -6.0911 2.0599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221259404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:23 Heat of formation + Delta-G solvation = -79.722342 kcal Electronic energy + Delta-G solvation = -30152.005143 eV Core-core repulsion = 25883.931089 eV Total energy + Delta-G solvation = -4268.074055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17266 -40.97064 -40.40403 -39.19696 -37.22716 -35.76233 -35.43868 -34.47762 -33.37811 -32.98509 -31.25737 -29.92326 -27.97698 -27.38970 -25.64720 -24.64927 -22.84771 -22.20157 -21.40309 -21.08685 -19.97526 -19.69390 -18.82454 -18.43149 -17.82174 -17.68339 -17.33408 -16.91617 -16.68775 -16.54735 -16.22745 -15.81155 -15.64431 -15.58786 -15.45306 -15.30980 -14.90143 -14.60366 -14.26952 -14.03705 -13.63661 -13.59507 -13.36457 -13.20196 -13.09231 -13.02270 -12.48071 -12.47006 -12.39303 -12.15085 -11.94640 -11.68208 -11.55802 -11.39840 -11.21288 -10.92128 -10.74903 -10.66052 -10.11144 -10.02200 -9.62417 -8.91191 -8.47359 -5.98340 1.36124 1.38862 1.49836 1.51512 1.60007 1.98068 2.12708 2.16191 2.26950 2.93540 3.17491 3.23555 3.30563 3.42604 3.62828 3.82798 3.98792 4.13457 4.32276 4.35197 4.36698 4.39147 4.48211 4.49360 4.54936 4.60129 4.63609 4.78103 4.79861 4.95415 5.01728 5.10052 5.11703 5.24352 5.30838 5.37694 5.49105 5.81434 5.89995 6.03167 6.07516 6.26987 6.55306 6.76612 6.98184 7.08282 7.10822 7.51835 7.60065 8.05401 8.67329 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.002401 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.893330 B =11659.649152 C =12512.245439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.570 5.570 10 C 0.410 3.590 11 O -0.616 6.616 12 C 0.055 3.945 13 N -0.505 5.505 14 C 0.044 3.956 15 C -0.085 4.085 16 C -0.113 4.113 17 H 0.113 0.887 18 C 0.112 3.888 19 N -0.629 5.629 20 C 0.531 3.469 21 O -0.575 6.575 22 C 0.134 3.866 23 N -0.731 5.731 24 C 0.706 3.294 25 N -0.847 5.847 26 O -0.640 6.640 27 C 0.142 3.858 28 H 0.096 0.904 29 C 0.044 3.956 30 H 0.278 0.722 31 H 0.395 0.605 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.411 0.589 43 H 0.413 0.587 44 H 0.423 0.577 45 H 0.051 0.949 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -22.084 2.065 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.207 5.207 10 C 0.197 3.803 11 O -0.504 6.504 12 C -0.077 4.077 13 N -0.227 5.227 14 C -0.083 4.083 15 C -0.123 4.123 16 C -0.132 4.132 17 H 0.131 0.869 18 C -0.009 4.009 19 N -0.364 5.364 20 C 0.321 3.679 21 O -0.455 6.455 22 C 0.006 3.994 23 N -0.391 5.391 24 C 0.403 3.597 25 N -0.416 5.416 26 O -0.522 6.522 27 C 0.038 3.962 28 H 0.114 0.886 29 C -0.085 4.085 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.249 0.751 43 H 0.243 0.757 44 H 0.257 0.743 45 H 0.069 0.931 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.880 -22.678 2.003 23.283 hybrid contribution -0.619 2.333 0.738 2.524 sum 4.261 -20.345 2.741 20.966 Atomic orbital electron populations 1.69674 1.06928 1.29412 1.50051 1.26084 0.96529 1.02575 0.96228 0.84987 0.77762 0.76621 0.78967 1.19507 1.19588 1.19770 1.19630 0.92699 0.84041 1.49889 0.90156 1.42155 1.09367 1.05085 1.64049 1.22031 0.88809 0.86869 0.82562 1.90385 1.15289 1.87579 1.57172 1.22030 0.95495 0.85598 1.04587 1.61319 1.19300 1.39279 1.02829 1.22107 0.96906 0.98403 0.90913 1.21404 0.96682 0.96237 0.97985 1.23021 1.00167 0.96764 0.93250 0.86868 1.23768 0.89902 0.96993 0.90241 1.49928 1.29405 1.09549 1.47523 1.20348 0.79976 0.89794 0.77826 1.90676 1.44722 1.67487 1.42595 1.20762 0.91068 0.89862 0.97689 1.44718 1.34622 1.06809 1.52915 1.15995 0.81490 0.82109 0.80073 1.42763 1.32753 1.13734 1.52314 1.90938 1.56458 1.52602 1.52177 1.22119 0.94184 0.81877 0.97981 0.88587 1.21382 0.95097 0.99002 0.93014 0.91273 0.77185 0.87302 0.88919 0.94739 0.91157 0.91015 0.88718 0.87289 0.86597 0.88013 0.87622 0.75084 0.75671 0.74323 0.93141 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 42.80 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.33 5.29 -306.97 -1.62 -30.95 16 10 C 0.41 19.19 7.14 87.66 0.63 19.82 16 11 O -0.62 -31.78 11.39 -3.09 -0.04 -31.82 16 12 C 0.05 2.01 5.82 85.56 0.50 2.51 16 13 N -0.50 -16.86 4.75 -910.24 -4.33 -21.18 16 14 C 0.04 1.33 5.00 86.41 0.43 1.76 16 15 C -0.09 -1.73 5.72 30.66 0.18 -1.55 16 16 C -0.11 -2.04 4.44 -10.27 -0.05 -2.09 16 17 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 18 C 0.11 1.36 7.97 86.45 0.69 2.05 16 19 N -0.63 -13.30 3.37 -820.38 -2.76 -16.06 16 20 C 0.53 12.81 8.05 87.66 0.71 13.52 16 21 O -0.57 -18.36 14.91 -3.05 -0.05 -18.41 16 22 C 0.13 2.53 5.93 85.63 0.51 3.03 16 23 N -0.73 -14.02 5.53 -482.29 -2.67 -16.69 16 24 C 0.71 14.31 8.84 179.05 1.58 15.90 16 25 N -0.85 -9.63 8.88 -184.75 -1.64 -11.27 16 26 O -0.64 -18.02 17.18 -3.99 -0.07 -18.09 16 27 C 0.14 3.57 4.29 43.92 0.19 3.76 16 28 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 29 C 0.04 1.51 4.78 85.83 0.41 1.92 16 30 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.39 19.63 7.90 -92.71 -0.73 18.90 16 32 H 0.11 3.54 8.00 -2.38 -0.02 3.52 16 33 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.03 1.28 6.15 -2.39 -0.01 1.26 16 35 H 0.07 2.02 7.97 -2.39 -0.02 2.00 16 36 H 0.07 1.44 7.69 -2.39 -0.02 1.42 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 0.90 7.95 -2.39 -0.02 0.88 16 39 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.41 7.67 7.45 -92.71 -0.69 6.98 16 43 H 0.41 2.58 8.84 -92.71 -0.82 1.76 16 44 H 0.42 3.67 8.93 -92.71 -0.83 2.85 16 45 H 0.05 2.15 5.12 -2.38 -0.01 2.13 16 46 H 0.06 2.20 6.84 -2.39 -0.02 2.18 16 Total: -1.00 -78.07 373.70 -5.80 -83.87 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -2.00 Total: 43.13 kcal Atomic # 6 Polarization: 35.33 SS G_CDS: 7.05 Total: 42.38 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -12.74 Total: -145.90 kcal Atomic # 8 Polarization: -68.17 SS G_CDS: -0.15 Total: -68.32 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -78.07 -5.80 -83.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221259404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.150 kcal (2) G-P(sol) polarization free energy of solvation -78.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds