Wall clock time and date at job start Tue Mar 31 2020 22:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00082 * 2 1 4 4 H 1.48497 * 109.46998 * 270.00239 * 3 2 1 5 5 H 1.48502 * 109.46773 * 30.00140 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99980 * 3 2 1 7 7 C 1.38815 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99978 * 197.01533 * 7 2 1 9 9 N 1.36937 * 119.99926 * 17.02141 * 7 2 1 10 10 C 1.47080 * 120.88079 * 206.58167 * 9 7 2 11 11 C 1.53237 * 108.52369 * 231.15819 * 10 9 7 12 12 N 1.46901 * 109.34084 * 306.17524 * 11 10 9 13 13 C 1.46907 * 110.99625 * 187.25155 * 12 11 10 14 14 C 1.53000 * 109.46788 * 170.00149 * 13 12 11 15 15 N 1.46502 * 109.46748 * 180.02562 * 14 13 12 16 16 C 1.34773 * 119.99484 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00513 * 359.72245 * 16 15 14 18 18 C 1.50706 * 119.99840 * 179.97438 * 16 15 14 19 19 N 1.46503 * 109.47274 * 180.02562 * 18 16 15 20 20 C 1.34764 * 124.17291 * 269.72705 * 19 18 16 21 21 O 1.21233 * 127.16121 * 359.97438 * 20 19 18 22 22 C 1.51593 * 105.67907 * 179.97438 * 20 19 18 23 23 N 1.47305 * 103.59464 * 0.32260 * 22 20 19 24 24 C 1.33793 * 124.17493 * 90.02341 * 19 18 16 25 25 O 1.21535 * 123.77619 * 359.96672 * 24 19 18 26 26 C 1.46897 * 111.26932 * 63.10393 * 12 11 10 27 27 C 1.47084 * 120.88459 * 26.56048 * 9 7 2 28 28 H 0.96998 * 120.00193 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.62176 * 111.45118 * 10 9 7 30 30 H 1.09001 * 109.78850 * 350.97195 * 10 9 7 31 31 H 1.09001 * 109.49320 * 186.20710 * 11 10 9 32 32 H 1.09010 * 109.48728 * 66.13105 * 11 10 9 33 33 H 1.08992 * 109.47176 * 49.99406 * 13 12 11 34 34 H 1.09005 * 109.46973 * 289.99470 * 13 12 11 35 35 H 1.08999 * 109.47296 * 59.99991 * 14 13 12 36 36 H 1.08997 * 109.47055 * 299.99678 * 14 13 12 37 37 H 0.96997 * 120.00138 * 359.97438 * 15 14 13 38 38 H 1.08997 * 109.47055 * 300.00163 * 18 16 15 39 39 H 1.08999 * 109.46898 * 60.00233 * 18 16 15 40 40 H 1.08998 * 110.76217 * 241.71095 * 22 20 19 41 41 H 1.09003 * 110.55832 * 118.82862 * 22 20 19 42 42 H 0.97002 * 126.69204 * 179.77193 * 23 22 20 43 43 H 1.08998 * 109.49448 * 56.85112 * 26 12 11 44 44 H 1.08998 * 109.49247 * 176.93333 * 26 12 11 45 45 H 1.08994 * 109.62981 * 248.55279 * 27 9 7 46 46 H 1.09006 * 109.62361 * 9.12752 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3706 -2.3623 -0.3461 10 6 1.8310 -3.6609 0.1684 11 6 2.0023 -4.6201 -1.0143 12 7 0.7547 -4.6656 -1.7885 13 6 0.8183 -5.7008 -2.8289 14 6 -0.5693 -5.8905 -3.4450 15 7 -0.5060 -6.9233 -4.4821 16 6 -1.6176 -7.2613 -5.1651 17 8 -2.6713 -6.7141 -4.9177 18 6 -1.5524 -8.3232 -6.2325 19 7 -2.8811 -8.5050 -6.8223 20 6 -3.7972 -9.3828 -6.3682 21 8 -3.6817 -10.1425 -5.4305 22 6 -5.0023 -9.2227 -7.2738 23 7 -4.5831 -8.1806 -8.2269 24 6 -3.3326 -7.8240 -7.8817 25 8 -2.6849 -6.9791 -8.4680 26 6 0.4401 -3.3537 -2.3696 27 6 0.2046 -2.3427 -1.2425 28 1 -0.4850 0.8400 -0.0004 29 1 1.0920 -4.0628 0.8617 30 1 2.7849 -3.5375 0.6811 31 1 2.2364 -5.6177 -0.6426 32 1 2.8137 -4.2695 -1.6522 33 1 1.1513 -6.6399 -2.3872 34 1 1.5210 -5.3944 -3.6038 35 1 -0.9022 -4.9513 -3.8867 36 1 -1.2720 -6.1969 -2.6701 37 1 0.3359 -7.3637 -4.6772 38 1 -0.8501 -8.0167 -7.0075 39 1 -1.2190 -9.2623 -5.7907 40 1 -5.8723 -8.8947 -6.7050 41 1 -5.2159 -10.1558 -7.7953 42 1 -5.1066 -7.8213 -8.9601 43 1 1.2732 -3.0208 -2.9886 44 1 -0.4589 -3.4328 -2.9809 45 1 -0.6906 -2.6178 -0.6848 46 1 0.0841 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265266415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:44 Heat of formation + Delta-G solvation = -29.440341 kcal Electronic energy + Delta-G solvation = -29272.312051 eV Core-core repulsion = 25006.418388 eV Total energy + Delta-G solvation = -4265.893664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.77065 -39.79466 -38.96988 -38.21733 -36.49307 -35.59380 -34.97979 -34.01336 -31.53374 -29.95072 -29.94092 -28.46212 -27.75645 -25.76675 -23.42101 -23.29535 -22.62701 -21.87264 -21.31267 -20.43239 -19.11464 -18.50319 -18.14218 -17.25453 -16.88855 -16.68135 -16.42925 -15.81141 -15.72360 -15.53557 -14.89942 -14.67032 -14.58555 -14.46967 -14.32966 -14.21539 -13.81196 -13.65203 -13.44167 -13.40525 -12.94827 -12.80774 -12.40540 -11.66832 -11.45766 -11.41961 -11.31651 -11.05385 -10.88574 -10.74978 -10.71328 -10.44618 -10.30982 -10.05043 -10.01681 -9.84692 -9.74824 -9.61527 -9.19444 -8.49933 -7.89817 -6.66374 -5.76633 -3.18235 1.21662 1.61086 2.33052 2.49406 2.68689 2.99870 3.38957 3.45574 3.47022 3.53655 4.25342 4.27339 4.47409 4.50348 4.52529 4.62668 4.68531 4.90272 4.99114 5.12469 5.16492 5.40393 5.42576 5.49713 5.81153 5.90070 5.93361 6.02445 6.10075 6.18627 6.26202 6.29152 6.32961 6.53817 6.55303 6.68709 6.90014 6.92564 7.19225 7.24506 7.53274 7.63769 7.67668 7.69957 7.82155 7.93273 8.44604 9.22294 9.85687 10.44128 11.32170 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021703 B = 0.001954 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.839872 B =14327.370317 C =14940.675914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.499 3.501 17 O -0.527 6.527 18 C 0.101 3.899 19 N -0.562 5.562 20 C 0.526 3.474 21 O -0.465 6.465 22 C 0.066 3.934 23 N -0.727 5.727 24 C 0.707 3.293 25 O -0.538 6.538 26 C 0.031 3.969 27 C 0.178 3.822 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.443 0.557 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 -23.081 -17.410 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.002 4.002 15 N -0.375 5.375 16 C 0.283 3.717 17 O -0.402 6.402 18 C -0.025 4.025 19 N -0.308 5.308 20 C 0.313 3.687 21 O -0.334 6.334 22 C -0.062 4.062 23 N -0.392 5.392 24 C 0.408 3.592 25 O -0.411 6.411 26 C -0.098 4.098 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.287 0.713 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.890 -22.588 -16.601 28.867 hybrid contribution 1.223 1.052 -0.928 1.861 sum -5.667 -21.536 -17.529 28.340 Atomic orbital electron populations 1.70027 1.05201 1.25513 1.53966 1.25038 0.95322 0.98387 1.01041 0.86277 0.79061 0.83705 0.77646 1.21508 1.21736 1.20479 1.19198 0.92577 0.84773 1.41668 0.91608 1.44131 1.34143 1.01270 1.52357 1.20971 0.97857 0.86486 0.92524 1.22629 0.89244 0.99528 0.96901 1.61875 1.34696 1.05777 1.23129 1.22195 0.94872 0.97017 0.94313 1.21426 0.98322 0.90791 0.89652 1.45821 1.11247 1.41515 1.38916 1.20657 0.84405 0.83948 0.82682 1.90760 1.29308 1.53749 1.66380 1.21449 0.83119 1.00754 0.97136 1.45800 1.16857 1.38054 1.30105 1.20906 0.84942 0.78868 0.83936 1.90842 1.79617 1.36813 1.26161 1.22452 0.97649 0.94446 0.91627 1.45347 1.15613 1.43041 1.35223 1.15759 0.82592 0.80882 0.79996 1.91041 1.60304 1.33085 1.56673 1.23008 0.98844 0.89196 0.98773 1.20870 0.88994 0.96585 0.88391 0.93577 0.95612 0.92538 0.91943 0.95321 0.90771 0.94881 0.90908 0.90281 0.76560 0.85420 0.85537 0.85595 0.85730 0.71268 0.95544 0.91801 0.95445 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 11.15 55.49 0.62 -26.01 16 2 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 3 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -7.02 9.63 -15.06 -0.15 -7.16 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.26 3.04 -172.01 -0.52 -15.78 16 10 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 11 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.23 4.63 -234.32 -1.08 -10.32 16 13 C 0.05 0.59 5.08 -3.82 -0.02 0.57 16 14 C 0.12 1.61 5.61 -4.04 -0.02 1.59 16 15 N -0.72 -7.34 5.56 -60.29 -0.33 -7.67 16 16 C 0.50 5.96 7.90 -10.98 -0.09 5.87 16 17 O -0.53 -8.76 16.43 5.56 0.09 -8.67 16 18 C 0.10 0.81 6.18 -5.19 -0.03 0.78 16 19 N -0.56 -5.17 2.09 -122.01 -0.26 -5.42 16 20 C 0.53 4.38 8.32 -10.55 -0.09 4.30 16 21 O -0.47 -5.17 17.75 5.60 0.10 -5.07 16 22 C 0.07 0.25 7.97 -4.31 -0.03 0.22 16 23 N -0.73 -3.96 6.58 -65.73 -0.43 -4.39 16 24 C 0.71 6.99 8.62 -88.01 -0.76 6.23 16 25 O -0.54 -7.32 17.48 5.33 0.09 -7.22 16 26 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 27 C 0.18 4.37 5.42 -3.60 -0.02 4.35 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 31 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 32 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 34 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 35 H 0.07 1.12 6.40 -51.93 -0.33 0.79 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.40 2.57 8.47 -40.82 -0.35 2.23 16 38 H 0.13 0.79 7.86 -51.93 -0.41 0.38 16 39 H 0.13 0.67 8.00 -51.93 -0.42 0.26 16 40 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.44 1.32 8.96 -40.82 -0.37 0.95 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 2.42 6.12 -51.93 -0.32 2.11 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -38.77 380.26 -9.06 -47.83 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.68 Total: -1.08 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: -1.36 Total: 21.18 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.01 Total: -69.60 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.28 Total: -20.97 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.77 -9.06 -47.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265266415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -38.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds