Wall clock time and date at job start Tue Mar 31 2020 22:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00082 * 2 1 4 4 H 1.48497 * 109.46998 * 270.00239 * 3 2 1 5 5 H 1.48502 * 109.46773 * 30.00140 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99980 * 3 2 1 7 7 C 1.38815 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99978 * 197.01533 * 7 2 1 9 9 N 1.36937 * 119.99926 * 17.02141 * 7 2 1 10 10 C 1.47080 * 120.88079 * 206.58167 * 9 7 2 11 11 C 1.53237 * 108.52369 * 231.15819 * 10 9 7 12 12 N 1.46901 * 109.34084 * 306.17524 * 11 10 9 13 13 C 1.46907 * 110.99625 * 187.25155 * 12 11 10 14 14 C 1.53000 * 109.46788 * 170.00149 * 13 12 11 15 15 N 1.46502 * 109.46748 * 180.02562 * 14 13 12 16 16 C 1.34773 * 119.99484 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00513 * 359.72245 * 16 15 14 18 18 C 1.50706 * 119.99840 * 179.97438 * 16 15 14 19 19 N 1.46503 * 109.47274 * 180.02562 * 18 16 15 20 20 C 1.34764 * 124.17291 * 269.72705 * 19 18 16 21 21 O 1.21233 * 127.16121 * 359.97438 * 20 19 18 22 22 C 1.51593 * 105.67907 * 179.97438 * 20 19 18 23 23 N 1.47305 * 103.59464 * 0.32260 * 22 20 19 24 24 C 1.33793 * 124.17493 * 90.02341 * 19 18 16 25 25 O 1.21535 * 123.77619 * 359.96672 * 24 19 18 26 26 C 1.46897 * 111.26932 * 63.10393 * 12 11 10 27 27 C 1.47084 * 120.88459 * 26.56048 * 9 7 2 28 28 H 0.96998 * 120.00193 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.62176 * 111.45118 * 10 9 7 30 30 H 1.09001 * 109.78850 * 350.97195 * 10 9 7 31 31 H 1.09001 * 109.49320 * 186.20710 * 11 10 9 32 32 H 1.09010 * 109.48728 * 66.13105 * 11 10 9 33 33 H 1.08992 * 109.47176 * 49.99406 * 13 12 11 34 34 H 1.09005 * 109.46973 * 289.99470 * 13 12 11 35 35 H 1.08999 * 109.47296 * 59.99991 * 14 13 12 36 36 H 1.08997 * 109.47055 * 299.99678 * 14 13 12 37 37 H 0.96997 * 120.00138 * 359.97438 * 15 14 13 38 38 H 1.08997 * 109.47055 * 300.00163 * 18 16 15 39 39 H 1.08999 * 109.46898 * 60.00233 * 18 16 15 40 40 H 1.08998 * 110.76217 * 241.71095 * 22 20 19 41 41 H 1.09003 * 110.55832 * 118.82862 * 22 20 19 42 42 H 0.97002 * 126.69204 * 179.77193 * 23 22 20 43 43 H 1.08998 * 109.49448 * 56.85112 * 26 12 11 44 44 H 1.08998 * 109.49247 * 176.93333 * 26 12 11 45 45 H 1.08994 * 109.62981 * 248.55279 * 27 9 7 46 46 H 1.09006 * 109.62361 * 9.12752 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3706 -2.3623 -0.3461 10 6 1.8310 -3.6609 0.1684 11 6 2.0023 -4.6201 -1.0143 12 7 0.7547 -4.6656 -1.7885 13 6 0.8183 -5.7008 -2.8289 14 6 -0.5693 -5.8905 -3.4450 15 7 -0.5060 -6.9233 -4.4821 16 6 -1.6176 -7.2613 -5.1651 17 8 -2.6713 -6.7141 -4.9177 18 6 -1.5524 -8.3232 -6.2325 19 7 -2.8811 -8.5050 -6.8223 20 6 -3.7972 -9.3828 -6.3682 21 8 -3.6817 -10.1425 -5.4305 22 6 -5.0023 -9.2227 -7.2738 23 7 -4.5831 -8.1806 -8.2269 24 6 -3.3326 -7.8240 -7.8817 25 8 -2.6849 -6.9791 -8.4680 26 6 0.4401 -3.3537 -2.3696 27 6 0.2046 -2.3427 -1.2425 28 1 -0.4850 0.8400 -0.0004 29 1 1.0920 -4.0628 0.8617 30 1 2.7849 -3.5375 0.6811 31 1 2.2364 -5.6177 -0.6426 32 1 2.8137 -4.2695 -1.6522 33 1 1.1513 -6.6399 -2.3872 34 1 1.5210 -5.3944 -3.6038 35 1 -0.9022 -4.9513 -3.8867 36 1 -1.2720 -6.1969 -2.6701 37 1 0.3359 -7.3637 -4.6772 38 1 -0.8501 -8.0167 -7.0075 39 1 -1.2190 -9.2623 -5.7907 40 1 -5.8723 -8.8947 -6.7050 41 1 -5.2159 -10.1558 -7.7953 42 1 -5.1066 -7.8213 -8.9601 43 1 1.2732 -3.0208 -2.9886 44 1 -0.4589 -3.4328 -2.9809 45 1 -0.6906 -2.6178 -0.6848 46 1 0.0841 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265266415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:43 Heat of formation + Delta-G solvation = -63.036704 kcal Electronic energy + Delta-G solvation = -29273.768899 eV Core-core repulsion = 25006.418388 eV Total energy + Delta-G solvation = -4267.350511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.40159 -40.77840 -39.73250 -39.68290 -37.22413 -36.93261 -35.68154 -35.49173 -33.34459 -31.67392 -31.04783 -29.43438 -28.45688 -27.35681 -25.02917 -24.30208 -23.96844 -22.94141 -22.39363 -21.24782 -20.83316 -19.15160 -18.94113 -18.69396 -17.93468 -17.52913 -17.31855 -16.99234 -16.71499 -16.41300 -16.29790 -15.96714 -15.77637 -15.39300 -15.30910 -15.27049 -15.18394 -14.99777 -14.88616 -14.61366 -14.21420 -14.06866 -13.35470 -13.23183 -13.02339 -12.86222 -12.64155 -12.58371 -12.24055 -12.19701 -12.05660 -11.87305 -11.78737 -11.57698 -11.43895 -11.40114 -10.79000 -10.61019 -10.42483 -10.22218 -9.32336 -8.71006 -7.89130 -5.34345 0.59846 1.00772 1.42363 1.45267 1.46717 1.55881 1.76042 2.14217 2.28064 2.49442 3.02461 3.05915 3.26272 3.61855 3.66386 3.74957 3.83816 4.04779 4.13510 4.27237 4.30544 4.31481 4.32439 4.33078 4.43943 4.52726 4.63075 4.65980 4.69307 4.79819 4.89740 4.96829 5.02445 5.18632 5.27100 5.35654 5.59561 5.64934 5.81084 5.94904 6.11453 6.20824 6.29817 6.35386 6.41536 7.04832 7.09564 7.10918 7.82059 8.36382 9.17853 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021703 B = 0.001954 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.839872 B =14327.370317 C =14940.675914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.544 5.544 13 C 0.055 3.945 14 C 0.130 3.870 15 N -0.705 5.705 16 C 0.493 3.507 17 O -0.581 6.581 18 C 0.101 3.899 19 N -0.569 5.569 20 C 0.518 3.482 21 O -0.499 6.499 22 C 0.075 3.925 23 N -0.709 5.709 24 C 0.698 3.302 25 O -0.585 6.585 26 C 0.050 3.950 27 C 0.185 3.815 28 H 0.250 0.750 29 H 0.014 0.986 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.029 0.971 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.422 0.578 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.455 0.545 43 H 0.024 0.976 44 H 0.072 0.928 45 H -0.005 1.005 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 -25.575 -18.771 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.392 4.392 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.073 4.073 14 C 0.006 3.994 15 N -0.359 5.359 16 C 0.279 3.721 17 O -0.461 6.461 18 C -0.024 4.024 19 N -0.314 5.314 20 C 0.308 3.692 21 O -0.370 6.370 22 C -0.051 4.051 23 N -0.374 5.374 24 C 0.398 3.602 25 O -0.462 6.462 26 C -0.079 4.079 27 C 0.059 3.941 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.260 0.740 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.165 0.835 41 H 0.186 0.814 42 H 0.302 0.698 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.013 0.987 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.775 -25.158 -17.986 31.461 hybrid contribution 0.847 1.742 -0.453 1.990 sum -4.928 -23.416 -18.439 30.209 Atomic orbital electron populations 1.70201 1.06788 1.25864 1.55589 1.25855 0.96089 1.01717 1.01415 0.85216 0.78108 0.79307 0.77521 1.21269 1.22243 1.19022 1.19569 0.92971 0.85895 1.40777 0.91117 1.44423 1.34087 1.02394 1.52994 1.21173 0.97591 0.85439 0.94251 1.22480 0.89004 1.00354 0.95231 1.61751 1.35156 1.05185 1.24830 1.22197 0.94733 0.96712 0.93690 1.21120 0.98169 0.90464 0.89679 1.45607 1.12087 1.40528 1.37689 1.21423 0.83742 0.84023 0.82935 1.90732 1.31358 1.55845 1.68133 1.21641 0.83591 1.00639 0.96489 1.45979 1.17479 1.38033 1.29950 1.21627 0.85853 0.77905 0.83834 1.90823 1.80380 1.38125 1.27711 1.22723 0.95846 0.95695 0.90881 1.45356 1.14090 1.42660 1.35306 1.16022 0.83580 0.80578 0.79972 1.91003 1.61803 1.35166 1.58191 1.22599 0.99213 0.89563 0.96552 1.20593 0.87899 0.96314 0.89318 0.94126 0.96759 0.91738 0.87925 0.95224 0.87542 0.93310 0.93506 0.92287 0.73980 0.83446 0.82528 0.83495 0.81435 0.69827 0.95817 0.90952 0.98694 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.53 11.15 21.65 0.24 -57.29 16 2 C -0.06 -3.20 4.94 84.86 0.42 -2.78 16 3 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.26 -14.74 9.63 84.03 0.81 -13.93 16 8 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 9 N -0.61 -32.05 3.04 -698.12 -2.12 -34.17 16 10 C 0.14 5.91 6.69 86.35 0.58 6.49 16 11 C 0.06 1.88 5.62 86.38 0.49 2.37 16 12 N -0.54 -18.12 4.63 -895.24 -4.14 -22.27 16 13 C 0.05 1.27 5.08 86.30 0.44 1.71 16 14 C 0.13 3.34 5.61 86.38 0.48 3.82 16 15 N -0.71 -13.14 5.56 -463.06 -2.57 -15.71 16 16 C 0.49 11.44 7.90 87.66 0.69 12.13 16 17 O -0.58 -19.75 16.43 -3.04 -0.05 -19.80 16 18 C 0.10 1.47 6.18 85.63 0.53 2.00 16 19 N -0.57 -9.79 2.09 -777.19 -1.63 -11.42 16 20 C 0.52 7.81 8.32 87.94 0.73 8.54 16 21 O -0.50 -10.52 17.75 -2.88 -0.05 -10.57 16 22 C 0.07 0.35 7.97 85.76 0.68 1.04 16 23 N -0.71 -6.31 6.58 -480.30 -3.16 -9.48 16 24 C 0.70 13.17 8.62 179.44 1.55 14.72 16 25 O -0.58 -15.90 17.48 -3.83 -0.07 -15.97 16 26 C 0.05 1.99 5.46 86.38 0.47 2.47 16 27 C 0.18 9.49 5.42 86.35 0.47 9.95 16 28 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 31 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 32 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 1.87 7.97 -2.39 -0.02 1.85 16 34 H 0.05 1.04 8.12 -2.38 -0.02 1.02 16 35 H 0.05 1.45 6.40 -2.39 -0.02 1.44 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.42 4.11 8.47 -92.71 -0.79 3.33 16 38 H 0.15 1.54 7.86 -2.39 -0.02 1.53 16 39 H 0.16 1.28 8.00 -2.39 -0.02 1.26 16 40 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.45 1.78 8.96 -92.71 -0.83 0.94 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 2.74 6.16 -2.39 -0.01 2.72 16 45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 46 H 0.05 3.16 6.12 -2.38 -0.01 3.15 16 Total: -1.00 -89.82 380.26 -3.77 -93.59 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -0.58 Total: 6.69 kcal Atomic # 6 Polarization: 40.18 SS G_CDS: 8.34 Total: 48.52 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -13.38 Total: -150.33 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.17 Total: -46.34 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -89.82 -3.77 -93.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265266415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.549 kcal (2) G-P(sol) polarization free energy of solvation -89.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds