Wall clock time and date at job start Tue Mar 31 2020 22:58:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86801 * 120.00082 * 2 1
4 4 H 1.48497 * 109.46998 * 270.00239 * 3 2 1
5 5 H 1.48502 * 109.46773 * 30.00140 * 3 2 1
6 6 H 1.48500 * 109.47234 * 149.99980 * 3 2 1
7 7 C 1.38815 * 120.00168 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99978 * 197.01533 * 7 2 1
9 9 N 1.36937 * 119.99926 * 17.02141 * 7 2 1
10 10 C 1.47080 * 120.88079 * 206.58167 * 9 7 2
11 11 C 1.53237 * 108.52369 * 231.15819 * 10 9 7
12 12 N 1.46901 * 109.34084 * 306.17524 * 11 10 9
13 13 C 1.46907 * 110.99625 * 187.25155 * 12 11 10
14 14 C 1.53000 * 109.46788 * 170.00149 * 13 12 11
15 15 N 1.46502 * 109.46748 * 180.02562 * 14 13 12
16 16 C 1.34773 * 119.99484 * 179.97438 * 15 14 13
17 17 O 1.21282 * 120.00513 * 359.72245 * 16 15 14
18 18 C 1.50706 * 119.99840 * 179.97438 * 16 15 14
19 19 N 1.46503 * 109.47274 * 180.02562 * 18 16 15
20 20 C 1.34764 * 124.17291 * 269.72705 * 19 18 16
21 21 O 1.21233 * 127.16121 * 359.97438 * 20 19 18
22 22 C 1.51593 * 105.67907 * 179.97438 * 20 19 18
23 23 N 1.47305 * 103.59464 * 0.32260 * 22 20 19
24 24 C 1.33793 * 124.17493 * 90.02341 * 19 18 16
25 25 O 1.21535 * 123.77619 * 359.96672 * 24 19 18
26 26 C 1.46897 * 111.26932 * 63.10393 * 12 11 10
27 27 C 1.47084 * 120.88459 * 26.56048 * 9 7 2
28 28 H 0.96998 * 120.00193 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.62176 * 111.45118 * 10 9 7
30 30 H 1.09001 * 109.78850 * 350.97195 * 10 9 7
31 31 H 1.09001 * 109.49320 * 186.20710 * 11 10 9
32 32 H 1.09010 * 109.48728 * 66.13105 * 11 10 9
33 33 H 1.08992 * 109.47176 * 49.99406 * 13 12 11
34 34 H 1.09005 * 109.46973 * 289.99470 * 13 12 11
35 35 H 1.08999 * 109.47296 * 59.99991 * 14 13 12
36 36 H 1.08997 * 109.47055 * 299.99678 * 14 13 12
37 37 H 0.96997 * 120.00138 * 359.97438 * 15 14 13
38 38 H 1.08997 * 109.47055 * 300.00163 * 18 16 15
39 39 H 1.08999 * 109.46898 * 60.00233 * 18 16 15
40 40 H 1.08998 * 110.76217 * 241.71095 * 22 20 19
41 41 H 1.09003 * 110.55832 * 118.82862 * 22 20 19
42 42 H 0.97002 * 126.69204 * 179.77193 * 23 22 20
43 43 H 1.08998 * 109.49448 * 56.85112 * 26 12 11
44 44 H 1.08998 * 109.49247 * 176.93333 * 26 12 11
45 45 H 1.08994 * 109.62981 * 248.55279 * 27 9 7
46 46 H 1.09006 * 109.62361 * 9.12752 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4976 2.0464 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 3.0548 -1.2225 0.2742
9 7 1.3706 -2.3623 -0.3461
10 6 1.8310 -3.6609 0.1684
11 6 2.0023 -4.6201 -1.0143
12 7 0.7547 -4.6656 -1.7885
13 6 0.8183 -5.7008 -2.8289
14 6 -0.5693 -5.8905 -3.4450
15 7 -0.5060 -6.9233 -4.4821
16 6 -1.6176 -7.2613 -5.1651
17 8 -2.6713 -6.7141 -4.9177
18 6 -1.5524 -8.3232 -6.2325
19 7 -2.8811 -8.5050 -6.8223
20 6 -3.7972 -9.3828 -6.3682
21 8 -3.6817 -10.1425 -5.4305
22 6 -5.0023 -9.2227 -7.2738
23 7 -4.5831 -8.1806 -8.2269
24 6 -3.3326 -7.8240 -7.8817
25 8 -2.6849 -6.9791 -8.4680
26 6 0.4401 -3.3537 -2.3696
27 6 0.2046 -2.3427 -1.2425
28 1 -0.4850 0.8400 -0.0004
29 1 1.0920 -4.0628 0.8617
30 1 2.7849 -3.5375 0.6811
31 1 2.2364 -5.6177 -0.6426
32 1 2.8137 -4.2695 -1.6522
33 1 1.1513 -6.6399 -2.3872
34 1 1.5210 -5.3944 -3.6038
35 1 -0.9022 -4.9513 -3.8867
36 1 -1.2720 -6.1969 -2.6701
37 1 0.3359 -7.3637 -4.6772
38 1 -0.8501 -8.0167 -7.0075
39 1 -1.2190 -9.2623 -5.7907
40 1 -5.8723 -8.8947 -6.7050
41 1 -5.2159 -10.1558 -7.7953
42 1 -5.1066 -7.8213 -8.9601
43 1 1.2732 -3.0208 -2.9886
44 1 -0.4589 -3.4328 -2.9809
45 1 -0.6906 -2.6178 -0.6848
46 1 0.0841 -1.3450 -1.6647
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265266415.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:58:43
Heat of formation + Delta-G solvation = -63.036704 kcal
Electronic energy + Delta-G solvation = -29273.768899 eV
Core-core repulsion = 25006.418388 eV
Total energy + Delta-G solvation = -4267.350511 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.40159 -40.77840 -39.73250 -39.68290 -37.22413 -36.93261 -35.68154 -35.49173
-33.34459 -31.67392 -31.04783 -29.43438 -28.45688 -27.35681 -25.02917 -24.30208
-23.96844 -22.94141 -22.39363 -21.24782 -20.83316 -19.15160 -18.94113 -18.69396
-17.93468 -17.52913 -17.31855 -16.99234 -16.71499 -16.41300 -16.29790 -15.96714
-15.77637 -15.39300 -15.30910 -15.27049 -15.18394 -14.99777 -14.88616 -14.61366
-14.21420 -14.06866 -13.35470 -13.23183 -13.02339 -12.86222 -12.64155 -12.58371
-12.24055 -12.19701 -12.05660 -11.87305 -11.78737 -11.57698 -11.43895 -11.40114
-10.79000 -10.61019 -10.42483 -10.22218 -9.32336 -8.71006 -7.89130 -5.34345
0.59846 1.00772 1.42363 1.45267 1.46717 1.55881 1.76042 2.14217
2.28064 2.49442 3.02461 3.05915 3.26272 3.61855 3.66386 3.74957
3.83816 4.04779 4.13510 4.27237 4.30544 4.31481 4.32439 4.33078
4.43943 4.52726 4.63075 4.65980 4.69307 4.79819 4.89740 4.96829
5.02445 5.18632 5.27100 5.35654 5.59561 5.64934 5.81084 5.94904
6.11453 6.20824 6.29817 6.35386 6.41536 7.04832 7.09564 7.10918
7.82059 8.36382 9.17853
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.021703 B = 0.001954 C = 0.001874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.839872 B =14327.370317 C =14940.675914
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.938 5.938
2 C -0.056 4.056
3 Si 0.970 3.030
4 H -0.286 1.286
5 H -0.296 1.296
6 H -0.266 1.266
7 C -0.262 4.262
8 H 0.071 0.929
9 N -0.615 5.615
10 C 0.141 3.859
11 C 0.058 3.942
12 N -0.544 5.544
13 C 0.055 3.945
14 C 0.130 3.870
15 N -0.705 5.705
16 C 0.493 3.507
17 O -0.581 6.581
18 C 0.101 3.899
19 N -0.569 5.569
20 C 0.518 3.482
21 O -0.499 6.499
22 C 0.075 3.925
23 N -0.709 5.709
24 C 0.698 3.302
25 O -0.585 6.585
26 C 0.050 3.950
27 C 0.185 3.815
28 H 0.250 0.750
29 H 0.014 0.986
30 H 0.064 0.936
31 H 0.103 0.897
32 H 0.029 0.971
33 H 0.106 0.894
34 H 0.049 0.951
35 H 0.047 0.953
36 H 0.059 0.941
37 H 0.422 0.578
38 H 0.148 0.852
39 H 0.157 0.843
40 H 0.148 0.852
41 H 0.168 0.832
42 H 0.455 0.545
43 H 0.024 0.976
44 H 0.072 0.928
45 H -0.005 1.005
46 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.052 -25.575 -18.771 32.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.584 5.584
2 C -0.251 4.251
3 Si 0.798 3.202
4 H -0.213 1.213
5 H -0.222 1.222
6 H -0.190 1.190
7 C -0.392 4.392
8 H 0.089 0.911
9 N -0.339 5.339
10 C 0.015 3.985
11 C -0.071 4.071
12 N -0.269 5.269
13 C -0.073 4.073
14 C 0.006 3.994
15 N -0.359 5.359
16 C 0.279 3.721
17 O -0.461 6.461
18 C -0.024 4.024
19 N -0.314 5.314
20 C 0.308 3.692
21 O -0.370 6.370
22 C -0.051 4.051
23 N -0.374 5.374
24 C 0.398 3.602
25 O -0.462 6.462
26 C -0.079 4.079
27 C 0.059 3.941
28 H 0.059 0.941
29 H 0.032 0.968
30 H 0.083 0.917
31 H 0.121 0.879
32 H 0.048 0.952
33 H 0.125 0.875
34 H 0.067 0.933
35 H 0.065 0.935
36 H 0.077 0.923
37 H 0.260 0.740
38 H 0.166 0.834
39 H 0.175 0.825
40 H 0.165 0.835
41 H 0.186 0.814
42 H 0.302 0.698
43 H 0.042 0.958
44 H 0.090 0.910
45 H 0.013 0.987
46 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -5.775 -25.158 -17.986 31.461
hybrid contribution 0.847 1.742 -0.453 1.990
sum -4.928 -23.416 -18.439 30.209
Atomic orbital electron populations
1.70201 1.06788 1.25864 1.55589 1.25855 0.96089 1.01717 1.01415
0.85216 0.78108 0.79307 0.77521 1.21269 1.22243 1.19022 1.19569
0.92971 0.85895 1.40777 0.91117 1.44423 1.34087 1.02394 1.52994
1.21173 0.97591 0.85439 0.94251 1.22480 0.89004 1.00354 0.95231
1.61751 1.35156 1.05185 1.24830 1.22197 0.94733 0.96712 0.93690
1.21120 0.98169 0.90464 0.89679 1.45607 1.12087 1.40528 1.37689
1.21423 0.83742 0.84023 0.82935 1.90732 1.31358 1.55845 1.68133
1.21641 0.83591 1.00639 0.96489 1.45979 1.17479 1.38033 1.29950
1.21627 0.85853 0.77905 0.83834 1.90823 1.80380 1.38125 1.27711
1.22723 0.95846 0.95695 0.90881 1.45356 1.14090 1.42660 1.35306
1.16022 0.83580 0.80578 0.79972 1.91003 1.61803 1.35166 1.58191
1.22599 0.99213 0.89563 0.96552 1.20593 0.87899 0.96314 0.89318
0.94126 0.96759 0.91738 0.87925 0.95224 0.87542 0.93310 0.93506
0.92287 0.73980 0.83446 0.82528 0.83495 0.81435 0.69827 0.95817
0.90952 0.98694 0.92688
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.53 11.15 21.65 0.24 -57.29 16
2 C -0.06 -3.20 4.94 84.86 0.42 -2.78 16
3 Si 0.97 45.84 29.59 68.60 2.03 47.87 16
4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
7 C -0.26 -14.74 9.63 84.03 0.81 -13.93 16
8 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16
9 N -0.61 -32.05 3.04 -698.12 -2.12 -34.17 16
10 C 0.14 5.91 6.69 86.35 0.58 6.49 16
11 C 0.06 1.88 5.62 86.38 0.49 2.37 16
12 N -0.54 -18.12 4.63 -895.24 -4.14 -22.27 16
13 C 0.05 1.27 5.08 86.30 0.44 1.71 16
14 C 0.13 3.34 5.61 86.38 0.48 3.82 16
15 N -0.71 -13.14 5.56 -463.06 -2.57 -15.71 16
16 C 0.49 11.44 7.90 87.66 0.69 12.13 16
17 O -0.58 -19.75 16.43 -3.04 -0.05 -19.80 16
18 C 0.10 1.47 6.18 85.63 0.53 2.00 16
19 N -0.57 -9.79 2.09 -777.19 -1.63 -11.42 16
20 C 0.52 7.81 8.32 87.94 0.73 8.54 16
21 O -0.50 -10.52 17.75 -2.88 -0.05 -10.57 16
22 C 0.07 0.35 7.97 85.76 0.68 1.04 16
23 N -0.71 -6.31 6.58 -480.30 -3.16 -9.48 16
24 C 0.70 13.17 8.62 179.44 1.55 14.72 16
25 O -0.58 -15.90 17.48 -3.83 -0.07 -15.97 16
26 C 0.05 1.99 5.46 86.38 0.47 2.47 16
27 C 0.18 9.49 5.42 86.35 0.47 9.95 16
28 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16
29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16
30 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16
31 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16
32 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16
33 H 0.11 1.87 7.97 -2.39 -0.02 1.85 16
34 H 0.05 1.04 8.12 -2.38 -0.02 1.02 16
35 H 0.05 1.45 6.40 -2.39 -0.02 1.44 16
36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16
37 H 0.42 4.11 8.47 -92.71 -0.79 3.33 16
38 H 0.15 1.54 7.86 -2.39 -0.02 1.53 16
39 H 0.16 1.28 8.00 -2.39 -0.02 1.26 16
40 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16
41 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16
42 H 0.45 1.78 8.96 -92.71 -0.83 0.94 16
43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16
44 H 0.07 2.74 6.16 -2.39 -0.01 2.72 16
45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16
46 H 0.05 3.16 6.12 -2.38 -0.01 3.15 16
Total: -1.00 -89.82 380.26 -3.77 -93.59
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: -0.58 Total: 6.69 kcal
Atomic # 6 Polarization: 40.18 SS G_CDS: 8.34 Total: 48.52 kcal
Atomic # 7 Polarization: -136.95 SS G_CDS: -13.38 Total: -150.33 kcal
Atomic # 8 Polarization: -46.17 SS G_CDS: -0.17 Total: -46.34 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -89.82 -3.77 -93.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265266415.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.549 kcal
(2) G-P(sol) polarization free energy of solvation -89.816 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.770 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds