Wall clock time and date at job start Tue Mar 31 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48506 * 109.46912 * 239.99361 * 3 2 1 5 5 H 1.48499 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47337 * 119.99653 * 3 2 1 7 7 C 1.38817 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99712 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00178 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47075 * 34.99972 * 10 9 7 12 12 C 1.53002 * 109.47358 * 155.00186 * 10 9 7 13 13 N 1.46497 * 109.46932 * 305.00422 * 12 10 9 14 14 C 1.34777 * 120.00306 * 180.02562 * 13 12 10 15 15 O 1.21730 * 119.99544 * 359.97438 * 14 13 12 16 16 C 1.46389 * 120.00506 * 180.02562 * 14 13 12 17 17 N 1.37636 * 126.32723 * 0.02562 * 16 14 13 18 18 H 0.96999 * 125.54620 * 0.02562 * 17 16 14 19 19 C 1.35642 * 108.89977 * 179.97438 * 17 16 14 20 20 C 1.35118 * 109.21914 * 0.26980 * 19 17 16 21 21 C 1.39097 * 126.32956 * 179.97438 * 16 14 13 22 22 C 1.48175 * 126.63272 * 0.03862 * 21 16 14 23 23 C 1.39450 * 120.12919 * 309.72267 * 22 21 16 24 24 C 1.37993 * 119.86340 * 179.79071 * 23 22 21 25 25 C 1.38338 * 120.13308 * 0.46564 * 24 23 22 26 26 C 1.38341 * 120.26715 * 359.78498 * 25 24 23 27 27 C 1.37993 * 120.12971 * 359.97438 * 26 25 24 28 28 C 1.53003 * 109.47249 * 275.00117 * 10 9 7 29 29 C 1.53004 * 117.49793 * 128.74144 * 28 10 9 30 30 C 1.53005 * 117.49781 * 60.08516 * 28 10 9 31 31 H 0.97005 * 119.99627 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99545 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47254 * 185.00409 * 12 10 9 34 34 H 1.09002 * 109.46931 * 64.99657 * 12 10 9 35 35 H 0.97001 * 120.00322 * 359.97438 * 13 12 10 36 36 H 1.08002 * 125.38596 * 179.97438 * 19 17 16 37 37 H 1.08004 * 126.09614 * 179.73823 * 20 19 17 38 38 H 1.07993 * 120.06959 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.93481 * 180.25452 * 24 23 22 40 40 H 1.08001 * 119.87176 * 179.76489 * 25 24 23 41 41 H 1.07997 * 119.93688 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.06533 * 180.02562 * 27 26 25 43 43 H 1.09000 * 115.55048 * 274.42046 * 28 10 9 44 44 H 1.08995 * 117.50041 * 0.02562 * 29 28 10 45 45 H 1.09000 * 117.49409 * 145.02295 * 29 28 10 46 46 H 1.08995 * 117.50192 * 214.97844 * 30 28 10 47 47 H 1.09008 * 117.49888 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5507 0.5900 12 6 1.1806 -4.7522 0.6101 13 7 0.7340 -4.3355 1.9416 14 6 -0.0551 -5.1477 2.6726 15 8 -0.3969 -6.2273 2.2261 16 6 -0.5019 -4.7311 4.0029 17 7 -0.1970 -3.5450 4.6311 18 1 0.3552 -2.8376 4.2630 19 6 -0.7954 -3.5260 5.8483 20 6 -1.4782 -4.6783 6.0263 21 6 -1.3139 -5.4602 4.8653 22 6 -1.8893 -6.8025 4.6147 23 6 -2.5747 -7.0597 3.4278 24 6 -3.1047 -8.3130 3.1981 25 6 -2.9654 -9.3104 4.1466 26 6 -2.2909 -9.0597 5.3282 27 6 -1.7524 -7.8118 5.5670 28 6 2.4218 -4.0357 -1.4365 29 6 3.8821 -4.3893 -1.7257 30 6 3.3027 -3.0623 -2.2222 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 -0.0002 33 1 1.7555 -5.6746 0.6919 34 1 0.3131 -4.9200 -0.0281 35 1 1.0067 -3.4754 2.2976 36 1 -0.7318 -2.7196 6.5639 37 1 -2.0504 -4.9502 6.9010 38 1 -2.6873 -6.2809 2.6883 39 1 -3.6322 -8.5147 2.2775 40 1 -3.3851 -10.2886 3.9641 41 1 -2.1857 -9.8421 6.0651 42 1 -1.2257 -7.6174 6.4897 43 1 1.6539 -4.5774 -1.9887 44 1 4.5834 -4.3524 -0.8921 45 1 4.0748 -5.1634 -2.4684 46 1 3.1147 -2.9639 -3.2913 47 1 3.6227 -2.1517 -1.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265375664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:29 Heat of formation + Delta-G solvation = 69.666807 kcal Electronic energy + Delta-G solvation = -28713.995533 eV Core-core repulsion = 24863.248742 eV Total energy + Delta-G solvation = -3850.746792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26535 -38.89105 -38.61067 -37.50394 -34.73932 -33.51476 -32.44373 -31.14346 -30.72646 -29.92952 -28.76509 -27.69211 -24.15546 -23.23935 -22.47909 -22.34286 -21.75994 -21.35974 -20.29922 -19.88998 -19.17010 -18.65396 -17.27705 -16.50409 -15.72342 -15.50273 -15.34513 -15.06530 -14.80497 -14.63187 -14.40508 -14.11053 -13.80657 -13.50472 -13.39904 -13.26212 -13.17979 -13.03315 -12.73858 -12.66229 -12.16167 -12.10385 -11.43954 -11.22976 -11.02426 -10.95329 -10.92544 -10.87811 -10.78801 -10.24009 -10.01989 -9.91283 -9.58263 -9.37248 -9.24772 -9.07291 -8.77377 -8.67006 -8.42472 -7.87058 -7.15102 -5.91274 -3.21386 1.18694 1.65293 1.82752 2.77977 3.14538 3.31260 3.37463 3.38904 3.48192 3.58950 4.06095 4.34615 4.51535 4.86414 5.05506 5.09637 5.12263 5.15414 5.19144 5.31284 5.37366 5.41281 5.45601 5.53587 5.67526 5.69569 5.75329 5.77648 5.83309 5.94104 6.01401 6.10177 6.12257 6.20322 6.27265 6.33469 6.48770 6.53260 6.54652 6.68578 6.70071 6.72453 6.81297 6.83548 6.91609 6.97507 7.20049 7.39755 7.55160 7.85540 8.25334 8.47518 9.37543 9.91519 10.27903 11.30091 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003055 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.309467 B = 9161.811348 C =10685.027414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.054 0.946 12 C 0.121 3.879 13 N -0.713 5.713 14 C 0.580 3.420 15 O -0.529 6.529 16 C -0.031 4.031 17 N -0.532 5.532 18 H 0.423 0.577 19 C 0.023 3.977 20 C -0.199 4.199 21 C -0.054 4.054 22 C -0.011 4.011 23 C -0.063 4.063 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.132 4.132 27 C -0.108 4.108 28 C -0.159 4.159 29 C -0.196 4.196 30 C -0.156 4.156 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.171 0.829 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -12.185 10.435 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.072 0.928 12 C -0.003 4.003 13 N -0.364 5.364 14 C 0.367 3.633 15 O -0.406 6.406 16 C -0.146 4.146 17 N -0.128 5.128 18 H 0.261 0.739 19 C -0.113 4.113 20 C -0.223 4.223 21 C -0.063 4.063 22 C -0.012 4.012 23 C -0.081 4.081 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.150 4.150 27 C -0.126 4.126 28 C -0.181 4.181 29 C -0.234 4.234 30 C -0.193 4.193 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.188 0.812 37 H 0.161 0.839 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.446 -12.671 10.006 16.210 hybrid contribution 0.599 1.907 -0.243 2.014 sum -0.848 -10.764 9.763 14.557 Atomic orbital electron populations 1.69651 1.05036 1.25886 1.56993 1.24724 0.95432 0.97562 1.02779 0.86347 0.78591 0.83785 0.77895 1.21208 1.21734 1.21334 1.19114 0.90797 0.83839 1.43355 0.91194 1.42463 1.05808 0.99400 1.88147 1.20061 0.94269 0.86106 0.91339 0.92777 1.21607 0.98695 0.97587 0.82419 1.45867 1.50924 1.21372 1.18244 1.16984 0.78828 0.84555 0.82966 1.90851 1.57057 1.21711 1.71012 1.20551 1.08762 0.89293 0.95962 1.42075 1.40019 1.15923 1.14734 0.73858 1.21894 1.00158 1.00781 0.88474 1.20835 1.06911 0.95074 0.99471 1.18508 0.99819 0.94062 0.93907 1.18084 0.97420 0.91167 0.94495 1.21162 0.94658 0.96891 0.95396 1.21024 1.00811 0.93395 0.99110 1.21102 0.99857 0.98872 0.94400 1.20937 0.99638 0.96735 0.97650 1.21105 0.99934 0.92738 0.98823 1.23016 0.92230 1.03128 0.99720 1.22962 0.97224 0.99820 1.03355 1.22779 1.03361 0.94014 0.99124 0.93368 0.78057 0.91433 0.91569 0.76155 0.81174 0.83947 0.86169 0.86416 0.86683 0.86518 0.86364 0.89081 0.89566 0.90036 0.90196 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.88 13.06 55.49 0.72 -25.16 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -5.86 8.63 -15.06 -0.13 -5.99 16 8 H 0.07 1.68 6.91 -52.49 -0.36 1.31 16 9 N -0.72 -15.69 4.54 -53.42 -0.24 -15.94 16 10 C 0.19 3.44 2.70 -67.93 -0.18 3.25 16 11 H 0.05 0.98 7.84 -51.93 -0.41 0.57 16 12 C 0.12 2.01 5.22 -4.04 -0.02 1.98 16 13 N -0.71 -11.54 5.38 -61.71 -0.33 -11.87 16 14 C 0.58 9.85 7.76 -12.98 -0.10 9.75 16 15 O -0.53 -10.13 13.42 5.16 0.07 -10.06 16 16 C -0.03 -0.47 7.07 -81.66 -0.58 -1.05 16 17 N -0.53 -6.55 5.98 -9.24 -0.06 -6.61 16 18 H 0.42 4.65 8.18 -40.82 -0.33 4.32 16 19 C 0.02 0.24 11.86 -16.98 -0.20 0.04 16 20 C -0.20 -2.38 10.73 -39.67 -0.43 -2.80 16 21 C -0.05 -0.79 5.67 -104.48 -0.59 -1.39 16 22 C -0.01 -0.16 5.27 -104.91 -0.55 -0.72 16 23 C -0.06 -0.96 7.63 -39.22 -0.30 -1.26 16 24 C -0.13 -1.67 10.03 -39.63 -0.40 -2.07 16 25 C -0.12 -1.47 10.04 -39.51 -0.40 -1.87 16 26 C -0.13 -1.53 10.03 -39.63 -0.40 -1.93 16 27 C -0.11 -1.39 9.73 -39.22 -0.38 -1.77 16 28 C -0.16 -2.70 5.36 -90.61 -0.49 -3.18 16 29 C -0.20 -2.90 10.18 -26.69 -0.27 -3.17 16 30 C -0.16 -2.69 9.78 -26.69 -0.26 -2.95 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 9.33 7.80 -40.82 -0.32 9.01 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 6.41 7.26 -40.82 -0.30 6.11 16 36 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.12 1.98 7.35 -52.49 -0.39 1.59 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 44 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.10 2.02 6.23 -51.92 -0.32 1.70 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -29.75 393.40 -11.33 -41.08 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -6.63 Total: 22.27 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -5.77 Total: -15.44 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.09 Total: -59.58 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.75 -11.33 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265375664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.746 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds