Wall clock time and date at job start Tue Mar 31 2020 22:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48506 * 109.46912 * 239.99361 * 3 2 1 5 5 H 1.48499 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47337 * 119.99653 * 3 2 1 7 7 C 1.38817 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99712 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00201 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00178 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47075 * 34.99972 * 10 9 7 12 12 C 1.53002 * 109.47358 * 155.00186 * 10 9 7 13 13 N 1.46497 * 109.46932 * 305.00422 * 12 10 9 14 14 C 1.34777 * 120.00306 * 180.02562 * 13 12 10 15 15 O 1.21730 * 119.99544 * 359.97438 * 14 13 12 16 16 C 1.46389 * 120.00506 * 180.02562 * 14 13 12 17 17 N 1.37636 * 126.32723 * 0.02562 * 16 14 13 18 18 H 0.96999 * 125.54620 * 0.02562 * 17 16 14 19 19 C 1.35642 * 108.89977 * 179.97438 * 17 16 14 20 20 C 1.35118 * 109.21914 * 0.26980 * 19 17 16 21 21 C 1.39097 * 126.32956 * 179.97438 * 16 14 13 22 22 C 1.48175 * 126.63272 * 0.03862 * 21 16 14 23 23 C 1.39450 * 120.12919 * 309.72267 * 22 21 16 24 24 C 1.37993 * 119.86340 * 179.79071 * 23 22 21 25 25 C 1.38338 * 120.13308 * 0.46564 * 24 23 22 26 26 C 1.38341 * 120.26715 * 359.78498 * 25 24 23 27 27 C 1.37993 * 120.12971 * 359.97438 * 26 25 24 28 28 C 1.53003 * 109.47249 * 275.00117 * 10 9 7 29 29 C 1.53004 * 117.49793 * 128.74144 * 28 10 9 30 30 C 1.53005 * 117.49781 * 60.08516 * 28 10 9 31 31 H 0.97005 * 119.99627 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99545 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47254 * 185.00409 * 12 10 9 34 34 H 1.09002 * 109.46931 * 64.99657 * 12 10 9 35 35 H 0.97001 * 120.00322 * 359.97438 * 13 12 10 36 36 H 1.08002 * 125.38596 * 179.97438 * 19 17 16 37 37 H 1.08004 * 126.09614 * 179.73823 * 20 19 17 38 38 H 1.07993 * 120.06959 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.93481 * 180.25452 * 24 23 22 40 40 H 1.08001 * 119.87176 * 179.76489 * 25 24 23 41 41 H 1.07997 * 119.93688 * 179.97438 * 26 25 24 42 42 H 1.08003 * 120.06533 * 180.02562 * 27 26 25 43 43 H 1.09000 * 115.55048 * 274.42046 * 28 10 9 44 44 H 1.08995 * 117.50041 * 0.02562 * 29 28 10 45 45 H 1.09000 * 117.49409 * 145.02295 * 29 28 10 46 46 H 1.08995 * 117.50192 * 214.97844 * 30 28 10 47 47 H 1.09008 * 117.49888 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5507 0.5900 12 6 1.1806 -4.7522 0.6101 13 7 0.7340 -4.3355 1.9416 14 6 -0.0551 -5.1477 2.6726 15 8 -0.3969 -6.2273 2.2261 16 6 -0.5019 -4.7311 4.0029 17 7 -0.1970 -3.5450 4.6311 18 1 0.3552 -2.8376 4.2630 19 6 -0.7954 -3.5260 5.8483 20 6 -1.4782 -4.6783 6.0263 21 6 -1.3139 -5.4602 4.8653 22 6 -1.8893 -6.8025 4.6147 23 6 -2.5747 -7.0597 3.4278 24 6 -3.1047 -8.3130 3.1981 25 6 -2.9654 -9.3104 4.1466 26 6 -2.2909 -9.0597 5.3282 27 6 -1.7524 -7.8118 5.5670 28 6 2.4218 -4.0357 -1.4365 29 6 3.8821 -4.3893 -1.7257 30 6 3.3027 -3.0623 -2.2222 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3880 -0.0002 33 1 1.7555 -5.6746 0.6919 34 1 0.3131 -4.9200 -0.0281 35 1 1.0067 -3.4754 2.2976 36 1 -0.7318 -2.7196 6.5639 37 1 -2.0504 -4.9502 6.9010 38 1 -2.6873 -6.2809 2.6883 39 1 -3.6322 -8.5147 2.2775 40 1 -3.3851 -10.2886 3.9641 41 1 -2.1857 -9.8421 6.0651 42 1 -1.2257 -7.6174 6.4897 43 1 1.6539 -4.5774 -1.9887 44 1 4.5834 -4.3524 -0.8921 45 1 4.0748 -5.1634 -2.4684 46 1 3.1147 -2.9639 -3.2913 47 1 3.6227 -2.1517 -1.7155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265375664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:28 Heat of formation + Delta-G solvation = 53.131911 kcal Electronic energy + Delta-G solvation = -28714.712540 eV Core-core repulsion = 24863.248742 eV Total energy + Delta-G solvation = -3851.463799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28983 -40.20682 -39.58916 -38.92469 -36.14249 -35.21163 -33.48854 -32.77129 -31.72316 -31.05872 -29.99842 -29.03007 -25.77422 -24.64695 -23.69116 -23.32569 -23.04866 -22.53920 -21.40431 -21.20944 -20.27818 -19.88801 -19.06537 -17.51476 -16.99970 -16.84106 -16.72855 -16.39376 -16.01984 -15.80774 -15.68461 -15.46145 -15.16353 -14.91275 -14.66633 -14.50117 -14.35556 -14.15097 -13.76394 -13.65443 -13.59658 -13.12741 -12.98598 -12.91867 -12.68614 -12.45424 -12.28032 -12.05208 -11.97707 -11.86194 -11.75201 -11.24795 -11.02377 -10.89834 -10.78863 -10.26559 -10.11806 -9.68200 -9.39402 -9.02808 -8.91952 -7.90522 -5.18700 0.11567 0.64394 0.80035 1.47869 1.50330 1.55089 1.83711 2.11884 2.26308 2.36312 2.55878 3.05100 3.05785 3.45912 3.75284 3.88345 3.96365 3.98956 4.13730 4.15912 4.20834 4.32172 4.32440 4.36653 4.36659 4.44166 4.55167 4.64448 4.71211 4.80321 4.81688 4.84517 4.88395 5.11901 5.13897 5.17337 5.23808 5.28897 5.38103 5.42305 5.47481 5.58865 5.59556 5.70525 5.74213 5.82616 5.94722 6.22359 6.28122 6.45779 6.59738 7.17258 7.36807 8.06973 8.33362 9.31605 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003055 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.309467 B = 9161.811348 C =10685.027414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.959 3.041 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.276 1.276 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.723 5.723 10 C 0.199 3.801 11 H 0.058 0.942 12 C 0.131 3.869 13 N -0.711 5.711 14 C 0.577 3.423 15 O -0.559 6.559 16 C -0.070 4.070 17 N -0.529 5.529 18 H 0.427 0.573 19 C 0.045 3.955 20 C -0.210 4.210 21 C -0.063 4.063 22 C -0.033 4.033 23 C -0.088 4.088 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.113 4.113 28 C -0.174 4.174 29 C -0.162 4.162 30 C -0.172 4.172 31 H 0.247 0.753 32 H 0.372 0.628 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.404 0.596 36 H 0.213 0.787 37 H 0.165 0.835 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -13.408 12.233 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.202 1.202 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.362 5.362 10 C 0.090 3.910 11 H 0.076 0.924 12 C 0.007 3.993 13 N -0.361 5.361 14 C 0.366 3.634 15 O -0.438 6.438 16 C -0.184 4.184 17 N -0.125 5.125 18 H 0.267 0.733 19 C -0.092 4.092 20 C -0.233 4.233 21 C -0.072 4.072 22 C -0.034 4.034 23 C -0.107 4.107 24 C -0.156 4.156 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.132 4.132 28 C -0.196 4.196 29 C -0.199 4.199 30 C -0.210 4.210 31 H 0.056 0.944 32 H 0.204 0.796 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.240 0.760 36 H 0.230 0.770 37 H 0.183 0.817 38 H 0.111 0.889 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.154 0.846 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.104 0.896 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.151 -13.916 11.798 18.244 hybrid contribution 0.221 2.178 -0.759 2.317 sum 0.071 -11.737 11.039 16.113 Atomic orbital electron populations 1.69804 1.06381 1.25669 1.59761 1.25342 0.96003 1.00308 1.04308 0.85431 0.77219 0.80332 0.78052 1.21185 1.23067 1.20222 1.19402 0.91094 0.84519 1.40148 0.90539 1.42555 1.05226 1.00326 1.88093 1.20128 0.93965 0.84685 0.92228 0.92419 1.21469 0.97946 0.97528 0.82399 1.45809 1.50980 1.21341 1.18008 1.17286 0.78311 0.84159 0.83684 1.90820 1.58113 1.22946 1.71927 1.20342 1.11100 0.91107 0.95810 1.42110 1.40073 1.15176 1.15150 0.73339 1.22626 0.97595 1.01115 0.87820 1.21162 1.07631 0.95118 0.99435 1.18860 0.99247 0.94318 0.94781 1.18320 0.97983 0.92128 0.94933 1.21090 0.96694 0.97284 0.95606 1.21248 1.00968 0.93193 1.00204 1.21467 0.99261 0.99576 0.93907 1.21362 0.98220 0.96970 0.98079 1.21374 0.99999 0.92801 0.98988 1.22921 0.93995 1.03971 0.98669 1.23033 0.95102 0.98317 1.03486 1.22730 1.04704 0.94274 0.99267 0.94386 0.79609 0.90283 0.93066 0.76019 0.77016 0.81720 0.88922 0.85471 0.83729 0.83243 0.84602 0.88943 0.88555 0.87576 0.89648 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.23 13.06 21.65 0.28 -54.95 16 2 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.96 43.21 29.55 68.60 2.03 45.24 16 4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.22 -10.76 8.63 84.03 0.73 -10.03 16 8 H 0.08 3.61 6.91 -2.91 -0.02 3.59 16 9 N -0.72 -32.07 4.54 -322.94 -1.47 -33.53 16 10 C 0.20 7.05 2.70 44.99 0.12 7.18 16 11 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 12 C 0.13 4.41 5.22 86.38 0.45 4.86 16 13 N -0.71 -23.75 5.38 -467.35 -2.52 -26.26 16 14 C 0.58 20.50 7.76 86.36 0.67 21.17 16 15 O -0.56 -22.54 13.42 -4.45 -0.06 -22.60 16 16 C -0.07 -2.17 7.07 40.56 0.29 -1.89 16 17 N -0.53 -12.75 5.98 -183.14 -1.10 -13.84 16 18 H 0.43 9.24 8.18 -92.71 -0.76 8.49 16 19 C 0.04 0.86 11.86 83.39 0.99 1.85 16 20 C -0.21 -4.70 10.73 22.21 0.24 -4.46 16 21 C -0.06 -1.85 5.67 -19.77 -0.11 -1.97 16 22 C -0.03 -1.00 5.27 -20.05 -0.11 -1.10 16 23 C -0.09 -2.85 7.63 22.50 0.17 -2.68 16 24 C -0.14 -3.74 10.03 22.24 0.22 -3.52 16 25 C -0.12 -2.74 10.04 22.32 0.22 -2.52 16 26 C -0.13 -2.70 10.03 22.24 0.22 -2.48 16 27 C -0.11 -2.79 9.73 22.50 0.22 -2.57 16 28 C -0.17 -5.75 5.36 -10.79 -0.06 -5.81 16 29 C -0.16 -4.38 10.18 30.62 0.31 -4.07 16 30 C -0.17 -5.79 9.78 30.62 0.30 -5.49 16 31 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 32 H 0.37 18.58 7.80 -92.71 -0.72 17.86 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.40 13.19 7.26 -92.71 -0.67 12.52 16 36 H 0.21 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.09 3.39 7.35 -2.91 -0.02 3.37 16 39 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 41 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 44 H 0.10 2.45 8.05 -2.39 -0.02 2.43 16 45 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.08 3.12 6.23 -2.38 -0.01 3.10 16 Total: -1.00 -66.43 393.40 1.38 -65.05 By element: Atomic # 1 Polarization: 58.65 SS G_CDS: -1.14 Total: 57.51 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 5.34 Total: -16.60 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -4.79 Total: -128.59 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.43 1.38 -65.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265375664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.180 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds