Wall clock time and date at job start Tue Mar 31 2020 22:22:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86797 * 119.99913 * 2 1
4 4 H 1.48500 * 109.47114 * 269.99623 * 3 2 1
5 5 H 1.48495 * 109.47053 * 29.99843 * 3 2 1
6 6 H 1.48498 * 109.46891 * 149.99890 * 3 2 1
7 7 C 1.38811 * 119.99822 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99812 * 180.02562 * 7 2 1
9 9 N 1.36935 * 120.00073 * 0.02562 * 7 2 1
10 10 C 1.46502 * 119.99883 * 180.02562 * 9 7 2
11 11 H 1.08998 * 109.47193 * 325.00268 * 10 9 7
12 12 C 1.53002 * 109.47116 * 204.99770 * 10 9 7
13 13 N 1.46497 * 109.46932 * 55.00437 * 12 10 9
14 14 C 1.34777 * 120.00306 * 180.02562 * 13 12 10
15 15 O 1.21730 * 119.99544 * 359.97438 * 14 13 12
16 16 C 1.46389 * 120.00506 * 180.02562 * 14 13 12
17 17 N 1.37636 * 126.32723 * 0.02562 * 16 14 13
18 18 H 0.96999 * 125.54620 * 0.02562 * 17 16 14
19 19 C 1.35642 * 108.89977 * 179.97438 * 17 16 14
20 20 C 1.35118 * 109.21914 * 0.26980 * 19 17 16
21 21 C 1.39097 * 126.32956 * 179.97438 * 16 14 13
22 22 C 1.48175 * 126.63272 * 0.03862 * 21 16 14
23 23 C 1.39450 * 120.12919 * 309.72267 * 22 21 16
24 24 C 1.37993 * 119.86340 * 179.79071 * 23 22 21
25 25 C 1.38338 * 120.13308 * 0.46564 * 24 23 22
26 26 C 1.38341 * 120.26715 * 359.78498 * 25 24 23
27 27 C 1.37993 * 120.12971 * 359.97438 * 26 25 24
28 28 C 1.52999 * 109.47175 * 84.99935 * 10 9 7
29 29 C 1.53002 * 117.50009 * 8.74703 * 28 10 9
30 30 C 1.53000 * 117.49969 * 300.08890 * 28 10 9
31 31 H 0.97001 * 120.00215 * 0.02562 * 1 2 3
32 32 H 0.96998 * 120.00198 * 0.02562 * 9 7 2
33 33 H 1.08996 * 109.47254 * 295.00424 * 12 10 9
34 34 H 1.09002 * 109.46931 * 174.99672 * 12 10 9
35 35 H 0.97001 * 120.00322 * 359.97438 * 13 12 10
36 36 H 1.08002 * 125.38596 * 179.97438 * 19 17 16
37 37 H 1.08004 * 126.09614 * 179.73823 * 20 19 17
38 38 H 1.07993 * 120.06959 * 0.02562 * 23 22 21
39 39 H 1.08001 * 119.93481 * 180.25452 * 24 23 22
40 40 H 1.08001 * 119.87176 * 179.76489 * 25 24 23
41 41 H 1.07997 * 119.93688 * 179.97438 * 26 25 24
42 42 H 1.08003 * 120.06533 * 180.02562 * 27 26 25
43 43 H 1.08993 * 115.55408 * 154.41884 * 28 10 9
44 44 H 1.09009 * 117.49480 * 359.97438 * 29 28 10
45 45 H 1.09002 * 117.50388 * 145.02010 * 29 28 10
46 46 H 1.09001 * 117.49894 * 214.97896 * 30 28 10
47 47 H 1.09001 * 117.49868 * 359.97438 * 30 28 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4476 2.6526 0.7000
6 1 3.5477 1.4401 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0017
11 1 2.9692 -3.5508 -0.5871
12 6 1.1813 -4.7524 -0.6081
13 7 0.7358 -4.3364 -1.9402
14 6 -0.0535 -5.1485 -2.6710
15 8 -0.3958 -6.2278 -2.2243
16 6 -0.4982 -4.7330 -4.0024
17 7 -0.1902 -3.5486 -4.6322
18 1 0.3638 -2.8421 -4.2650
19 6 -0.7865 -3.5307 -5.8504
20 6 -1.4807 -4.6770 -6.0226
21 6 -1.3094 -5.4627 -4.8652
22 6 -1.8871 -6.8037 -4.6133
23 6 -1.0713 -7.8462 -4.1747
24 6 -1.6160 -9.0918 -3.9377
25 6 -2.9665 -9.3098 -4.1435
26 6 -3.7798 -8.2809 -4.5834
27 6 -3.2476 -7.0297 -4.8192
28 6 2.4209 -4.0350 1.4391
29 6 1.8114 -3.1975 2.5652
30 6 3.2977 -3.0592 2.2265
31 1 -0.4850 0.8400 -0.0004
32 1 0.3556 -2.3881 -0.0002
33 1 0.3133 -4.9200 0.0294
34 1 1.7564 -5.6749 -0.6890
35 1 1.0083 -3.4761 -2.2961
36 1 -0.7210 -2.7254 -6.5671
37 1 -2.0609 -4.9449 -6.8934
38 1 -0.0163 -7.6782 -4.0173
39 1 -0.9860 -9.8989 -3.5941
40 1 -3.3875 -10.2873 -3.9602
41 1 -4.8333 -8.4572 -4.7427
42 1 -3.8837 -6.2271 -5.1622
43 1 2.5620 -5.0998 1.6238
44 1 1.1523 -2.3768 2.2819
45 1 1.5519 -3.7113 3.4909
46 1 4.0155 -3.4822 2.9293
47 1 3.6165 -2.1480 1.7202
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001265375665.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:22:31
Heat of formation + Delta-G solvation = 72.833492 kcal
Electronic energy + Delta-G solvation = -28829.582658 eV
Core-core repulsion = 24978.973184 eV
Total energy + Delta-G solvation = -3850.609474 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.26646 -38.90083 -38.61328 -37.56692 -34.57854 -33.36238 -32.44966 -31.08058
-30.73009 -29.91709 -28.78607 -27.76881 -24.13529 -23.34481 -22.60177 -22.35147
-21.66438 -21.29843 -20.29201 -19.56455 -19.11384 -18.50662 -17.28360 -16.50682
-15.76826 -15.57012 -15.30679 -15.02744 -14.75088 -14.65522 -14.52846 -13.96244
-13.86896 -13.48573 -13.37814 -13.27134 -13.14338 -12.92229 -12.72953 -12.67157
-12.17135 -12.06768 -11.35935 -11.23407 -11.02307 -10.97661 -10.92220 -10.88702
-10.57802 -10.20283 -9.91486 -9.75237 -9.51949 -9.26604 -9.21402 -9.07259
-8.76793 -8.67237 -8.42646 -7.87157 -7.16721 -5.93000 -3.23802 1.18874
1.65001 1.82348 2.78027 3.14155 3.30044 3.37807 3.39233 3.47313
3.60476 4.05637 4.41471 4.57787 4.86426 5.05554 5.09842 5.12742
5.17995 5.29485 5.31551 5.37509 5.40463 5.51323 5.66573 5.68796
5.75422 5.76911 5.79538 5.92571 5.98862 6.01551 6.10757 6.20159
6.26692 6.34274 6.38755 6.54470 6.59308 6.66840 6.68260 6.71510
6.81492 6.83619 6.94466 6.97413 7.19518 7.22697 7.39601 7.56494
7.85862 8.23772 8.47870 9.36171 9.89862 10.26239 11.28029
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.013112 B = 0.003058 C = 0.002629
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2134.954927 B = 9153.940142 C =10647.831942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C -0.007 4.007
3 Si 0.903 3.097
4 H -0.291 1.291
5 H -0.292 1.292
6 H -0.282 1.282
7 C -0.242 4.242
8 H 0.072 0.928
9 N -0.718 5.718
10 C 0.192 3.808
11 H 0.056 0.944
12 C 0.121 3.879
13 N -0.713 5.713
14 C 0.580 3.420
15 O -0.529 6.529
16 C -0.031 4.031
17 N -0.532 5.532
18 H 0.423 0.577
19 C 0.022 3.978
20 C -0.199 4.199
21 C -0.054 4.054
22 C -0.011 4.011
23 C -0.064 4.064
24 C -0.126 4.126
25 C -0.124 4.124
26 C -0.130 4.130
27 C -0.107 4.107
28 C -0.178 4.178
29 C -0.162 4.162
30 C -0.175 4.175
31 H 0.256 0.744
32 H 0.386 0.614
33 H 0.067 0.933
34 H 0.065 0.935
35 H 0.403 0.597
36 H 0.171 0.829
37 H 0.143 0.857
38 H 0.119 0.881
39 H 0.117 0.883
40 H 0.115 0.885
41 H 0.117 0.883
42 H 0.119 0.881
43 H 0.086 0.914
44 H 0.118 0.882
45 H 0.069 0.931
46 H 0.072 0.928
47 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.561 -12.058 -10.512 16.073
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.204 4.204
3 Si 0.734 3.266
4 H -0.218 1.218
5 H -0.218 1.218
6 H -0.207 1.207
7 C -0.373 4.373
8 H 0.089 0.911
9 N -0.360 5.360
10 C 0.081 3.919
11 H 0.074 0.926
12 C -0.003 4.003
13 N -0.364 5.364
14 C 0.366 3.634
15 O -0.406 6.406
16 C -0.145 4.145
17 N -0.127 5.127
18 H 0.261 0.739
19 C -0.113 4.113
20 C -0.223 4.223
21 C -0.063 4.063
22 C -0.011 4.011
23 C -0.082 4.082
24 C -0.144 4.144
25 C -0.142 4.142
26 C -0.148 4.148
27 C -0.125 4.125
28 C -0.199 4.199
29 C -0.200 4.200
30 C -0.212 4.212
31 H 0.066 0.934
32 H 0.221 0.779
33 H 0.085 0.915
34 H 0.084 0.916
35 H 0.238 0.762
36 H 0.188 0.812
37 H 0.161 0.839
38 H 0.137 0.863
39 H 0.135 0.865
40 H 0.133 0.867
41 H 0.135 0.865
42 H 0.137 0.863
43 H 0.104 0.896
44 H 0.136 0.864
45 H 0.088 0.912
46 H 0.090 0.910
47 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -1.568 -12.555 -10.067 16.169
hybrid contribution 0.553 1.918 0.234 2.009
sum -1.015 -10.637 -9.834 14.522
Atomic orbital electron populations
1.69662 1.05005 1.25814 1.56977 1.24720 0.95414 0.97557 1.02731
0.86270 0.78808 0.84108 0.77453 1.21832 1.21813 1.20736 1.19165
0.90909 0.83787 1.43403 0.91055 1.42495 1.05850 0.99496 1.88157
1.20000 0.94016 0.86049 0.91835 0.92581 1.21592 0.98894 0.97450
0.82355 1.45875 1.50861 1.21411 1.18244 1.16984 0.78738 0.84631
0.83002 1.90852 1.56900 1.21806 1.71066 1.20554 1.08724 0.89411
0.95845 1.42073 1.40011 1.16125 1.14538 0.73864 1.21893 1.00146
1.00812 0.88475 1.20836 1.06741 0.95019 0.99693 1.18508 0.99743
0.94024 0.94051 1.18084 0.92856 0.90956 0.99222 1.21112 0.99825
0.91788 0.95491 1.21004 0.95269 0.97172 1.00975 1.21100 0.94014
0.98808 1.00317 1.20950 0.99413 0.93250 1.01233 1.21129 0.94122
0.96939 1.00310 1.23051 1.06034 0.95397 0.95457 1.22914 0.96669
1.03480 0.96897 1.22849 0.93514 1.01837 1.03017 0.93396 0.77926
0.91462 0.91628 0.76177 0.81181 0.83948 0.86325 0.86481 0.86677
0.86465 0.86287 0.89568 0.86375 0.91239 0.90995 0.87973
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -25.50 13.06 55.49 0.72 -24.78 16
2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
3 Si 0.90 20.72 29.55 -169.99 -5.02 15.70 16
4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.24 -5.80 8.15 -15.06 -0.12 -5.92 16
8 H 0.07 1.70 6.91 -52.49 -0.36 1.34 16
9 N -0.72 -15.36 3.08 -53.43 -0.16 -15.52 16
10 C 0.19 3.39 2.86 -67.93 -0.19 3.20 16
11 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16
12 C 0.12 2.00 5.22 -4.04 -0.02 1.98 16
13 N -0.71 -11.47 5.38 -61.71 -0.33 -11.81 16
14 C 0.58 9.83 7.76 -12.98 -0.10 9.73 16
15 O -0.53 -10.13 13.42 5.16 0.07 -10.06 16
16 C -0.03 -0.47 7.07 -81.66 -0.58 -1.04 16
17 N -0.53 -6.54 5.98 -9.24 -0.06 -6.59 16
18 H 0.42 4.64 8.18 -40.82 -0.33 4.30 16
19 C 0.02 0.24 11.86 -16.98 -0.20 0.04 16
20 C -0.20 -2.38 10.73 -39.67 -0.43 -2.80 16
21 C -0.05 -0.80 5.67 -104.48 -0.59 -1.39 16
22 C -0.01 -0.16 5.27 -104.91 -0.55 -0.71 16
23 C -0.06 -0.95 7.63 -39.22 -0.30 -1.25 16
24 C -0.13 -1.64 10.03 -39.63 -0.40 -2.04 16
25 C -0.12 -1.47 10.04 -39.51 -0.40 -1.87 16
26 C -0.13 -1.55 10.03 -39.63 -0.40 -1.95 16
27 C -0.11 -1.41 9.73 -39.22 -0.38 -1.80 16
28 C -0.18 -3.02 5.71 -90.62 -0.52 -3.54 16
29 C -0.16 -2.99 9.74 -26.69 -0.26 -3.25 16
30 C -0.18 -3.06 9.87 -26.69 -0.26 -3.32 16
31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16
32 H 0.39 9.21 7.80 -40.82 -0.32 8.89 16
33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
35 H 0.40 6.35 7.26 -40.82 -0.30 6.06 16
36 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16
37 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16
38 H 0.12 1.82 7.35 -52.49 -0.39 1.43 16
39 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16
40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16
41 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16
42 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16
43 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16
44 H 0.12 2.61 6.68 -51.92 -0.35 2.26 16
45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
47 H 0.10 2.00 6.22 -51.93 -0.32 1.67 16
LS Contribution 390.49 15.07 5.88 5.88
Total: -1.00 -29.14 390.49 -11.27 -40.41
By element:
Atomic # 1 Polarization: 29.57 SS G_CDS: -6.57 Total: 23.00 kcal
Atomic # 6 Polarization: -10.43 SS G_CDS: -5.80 Total: -16.23 kcal
Atomic # 7 Polarization: -58.87 SS G_CDS: 0.17 Total: -58.70 kcal
Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -29.14 -11.27 -40.41 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265375665.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.243 kcal
(2) G-P(sol) polarization free energy of solvation -29.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.833 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds