Wall clock time and date at job start Tue Mar 31 2020 22:22:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31624 * 1
3 3 Si 1.86797 * 119.99913 * 2 1
4 4 H 1.48500 * 109.47114 * 269.99623 * 3 2 1
5 5 H 1.48495 * 109.47053 * 29.99843 * 3 2 1
6 6 H 1.48498 * 109.46891 * 149.99890 * 3 2 1
7 7 C 1.38811 * 119.99822 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99812 * 180.02562 * 7 2 1
9 9 N 1.36935 * 120.00073 * 0.02562 * 7 2 1
10 10 C 1.46502 * 119.99883 * 180.02562 * 9 7 2
11 11 H 1.08998 * 109.47193 * 325.00268 * 10 9 7
12 12 C 1.53002 * 109.47116 * 204.99770 * 10 9 7
13 13 N 1.46497 * 109.46932 * 55.00437 * 12 10 9
14 14 C 1.34777 * 120.00306 * 180.02562 * 13 12 10
15 15 O 1.21730 * 119.99544 * 359.97438 * 14 13 12
16 16 C 1.46389 * 120.00506 * 180.02562 * 14 13 12
17 17 N 1.37636 * 126.32723 * 0.02562 * 16 14 13
18 18 H 0.96999 * 125.54620 * 0.02562 * 17 16 14
19 19 C 1.35642 * 108.89977 * 179.97438 * 17 16 14
20 20 C 1.35118 * 109.21914 * 0.26980 * 19 17 16
21 21 C 1.39097 * 126.32956 * 179.97438 * 16 14 13
22 22 C 1.48175 * 126.63272 * 0.03862 * 21 16 14
23 23 C 1.39450 * 120.12919 * 309.72267 * 22 21 16
24 24 C 1.37993 * 119.86340 * 179.79071 * 23 22 21
25 25 C 1.38338 * 120.13308 * 0.46564 * 24 23 22
26 26 C 1.38341 * 120.26715 * 359.78498 * 25 24 23
27 27 C 1.37993 * 120.12971 * 359.97438 * 26 25 24
28 28 C 1.52999 * 109.47175 * 84.99935 * 10 9 7
29 29 C 1.53002 * 117.50009 * 8.74703 * 28 10 9
30 30 C 1.53000 * 117.49969 * 300.08890 * 28 10 9
31 31 H 0.97001 * 120.00215 * 0.02562 * 1 2 3
32 32 H 0.96998 * 120.00198 * 0.02562 * 9 7 2
33 33 H 1.08996 * 109.47254 * 295.00424 * 12 10 9
34 34 H 1.09002 * 109.46931 * 174.99672 * 12 10 9
35 35 H 0.97001 * 120.00322 * 359.97438 * 13 12 10
36 36 H 1.08002 * 125.38596 * 179.97438 * 19 17 16
37 37 H 1.08004 * 126.09614 * 179.73823 * 20 19 17
38 38 H 1.07993 * 120.06959 * 0.02562 * 23 22 21
39 39 H 1.08001 * 119.93481 * 180.25452 * 24 23 22
40 40 H 1.08001 * 119.87176 * 179.76489 * 25 24 23
41 41 H 1.07997 * 119.93688 * 179.97438 * 26 25 24
42 42 H 1.08003 * 120.06533 * 180.02562 * 27 26 25
43 43 H 1.08993 * 115.55408 * 154.41884 * 28 10 9
44 44 H 1.09009 * 117.49480 * 359.97438 * 29 28 10
45 45 H 1.09002 * 117.50388 * 145.02010 * 29 28 10
46 46 H 1.09001 * 117.49894 * 214.97896 * 30 28 10
47 47 H 1.09001 * 117.49868 * 359.97438 * 30 28 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4476 2.6526 0.7000
6 1 3.5477 1.4401 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6568 0.0017
11 1 2.9692 -3.5508 -0.5871
12 6 1.1813 -4.7524 -0.6081
13 7 0.7358 -4.3364 -1.9402
14 6 -0.0535 -5.1485 -2.6710
15 8 -0.3958 -6.2278 -2.2243
16 6 -0.4982 -4.7330 -4.0024
17 7 -0.1902 -3.5486 -4.6322
18 1 0.3638 -2.8421 -4.2650
19 6 -0.7865 -3.5307 -5.8504
20 6 -1.4807 -4.6770 -6.0226
21 6 -1.3094 -5.4627 -4.8652
22 6 -1.8871 -6.8037 -4.6133
23 6 -1.0713 -7.8462 -4.1747
24 6 -1.6160 -9.0918 -3.9377
25 6 -2.9665 -9.3098 -4.1435
26 6 -3.7798 -8.2809 -4.5834
27 6 -3.2476 -7.0297 -4.8192
28 6 2.4209 -4.0350 1.4391
29 6 1.8114 -3.1975 2.5652
30 6 3.2977 -3.0592 2.2265
31 1 -0.4850 0.8400 -0.0004
32 1 0.3556 -2.3881 -0.0002
33 1 0.3133 -4.9200 0.0294
34 1 1.7564 -5.6749 -0.6890
35 1 1.0083 -3.4761 -2.2961
36 1 -0.7210 -2.7254 -6.5671
37 1 -2.0609 -4.9449 -6.8934
38 1 -0.0163 -7.6782 -4.0173
39 1 -0.9860 -9.8989 -3.5941
40 1 -3.3875 -10.2873 -3.9602
41 1 -4.8333 -8.4572 -4.7427
42 1 -3.8837 -6.2271 -5.1622
43 1 2.5620 -5.0998 1.6238
44 1 1.1523 -2.3768 2.2819
45 1 1.5519 -3.7113 3.4909
46 1 4.0155 -3.4822 2.9293
47 1 3.6165 -2.1480 1.7202
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001265375665.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:22:30
Heat of formation + Delta-G solvation = 57.238794 kcal
Electronic energy + Delta-G solvation = -28830.258895 eV
Core-core repulsion = 24978.973184 eV
Total energy + Delta-G solvation = -3851.285711 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.28732 -40.22213 -39.58448 -39.03536 -35.96304 -35.10560 -33.48198 -32.67518
-31.72038 -31.06021 -30.03232 -29.07733 -25.75140 -24.79638 -23.78952 -23.32722
-23.04863 -22.50532 -21.32563 -20.91914 -20.20703 -19.80360 -19.07908 -17.51071
-17.01495 -16.95601 -16.58007 -16.34618 -16.24648 -15.79444 -15.67811 -15.37110
-15.30169 -14.77797 -14.59673 -14.47366 -14.32995 -14.15760 -13.75282 -13.65743
-13.61922 -13.12182 -12.94801 -12.88125 -12.67990 -12.61014 -12.14927 -11.97776
-11.97294 -11.85892 -11.61596 -11.22180 -11.05380 -10.85480 -10.64149 -10.26069
-10.10219 -9.67718 -9.39385 -9.02283 -8.91537 -7.90384 -5.18583 0.12264
0.64845 0.80067 1.46690 1.50307 1.55904 1.83929 2.11569 2.26876
2.37971 2.56278 3.05290 3.11596 3.44261 3.84799 3.87629 3.95287
4.01083 4.14822 4.21038 4.25566 4.31183 4.32627 4.36881 4.44756
4.47951 4.56525 4.64629 4.71867 4.80905 4.82768 4.90759 4.95201
5.15939 5.17143 5.21824 5.24193 5.29277 5.38935 5.49295 5.58997
5.64700 5.66297 5.70710 5.74048 5.82989 5.94658 6.22631 6.28830
6.46128 6.60528 7.18313 7.37555 8.07481 8.33639 9.31529
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.013112 B = 0.003058 C = 0.002629
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2134.954927 B = 9153.940142 C =10647.831942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.963 5.963
2 C -0.064 4.064
3 Si 0.956 3.044
4 H -0.288 1.288
5 H -0.307 1.307
6 H -0.275 1.275
7 C -0.218 4.218
8 H 0.076 0.924
9 N -0.720 5.720
10 C 0.194 3.806
11 H 0.061 0.939
12 C 0.131 3.869
13 N -0.710 5.710
14 C 0.577 3.423
15 O -0.558 6.558
16 C -0.069 4.069
17 N -0.529 5.529
18 H 0.428 0.572
19 C 0.044 3.956
20 C -0.211 4.211
21 C -0.063 4.063
22 C -0.034 4.034
23 C -0.085 4.085
24 C -0.137 4.137
25 C -0.125 4.125
26 C -0.131 4.131
27 C -0.118 4.118
28 C -0.169 4.169
29 C -0.174 4.174
30 C -0.168 4.168
31 H 0.247 0.753
32 H 0.373 0.627
33 H 0.050 0.950
34 H 0.081 0.919
35 H 0.404 0.596
36 H 0.213 0.787
37 H 0.164 0.836
38 H 0.101 0.899
39 H 0.132 0.868
40 H 0.145 0.855
41 H 0.146 0.854
42 H 0.131 0.869
43 H 0.115 0.885
44 H 0.077 0.923
45 H 0.090 0.910
46 H 0.101 0.899
47 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.164 -12.978 -11.522 17.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.614 5.614
2 C -0.257 4.257
3 Si 0.787 3.213
4 H -0.215 1.215
5 H -0.234 1.234
6 H -0.200 1.200
7 C -0.350 4.350
8 H 0.094 0.906
9 N -0.360 5.360
10 C 0.085 3.915
11 H 0.079 0.921
12 C 0.007 3.993
13 N -0.361 5.361
14 C 0.366 3.634
15 O -0.438 6.438
16 C -0.183 4.183
17 N -0.125 5.125
18 H 0.267 0.733
19 C -0.092 4.092
20 C -0.234 4.234
21 C -0.072 4.072
22 C -0.035 4.035
23 C -0.103 4.103
24 C -0.155 4.155
25 C -0.143 4.143
26 C -0.149 4.149
27 C -0.136 4.136
28 C -0.190 4.190
29 C -0.211 4.211
30 C -0.205 4.205
31 H 0.056 0.944
32 H 0.205 0.795
33 H 0.069 0.931
34 H 0.099 0.901
35 H 0.240 0.760
36 H 0.229 0.771
37 H 0.182 0.818
38 H 0.119 0.881
39 H 0.150 0.850
40 H 0.162 0.838
41 H 0.164 0.836
42 H 0.149 0.851
43 H 0.132 0.868
44 H 0.096 0.904
45 H 0.108 0.892
46 H 0.119 0.881
47 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -1.111 -13.493 -11.075 17.491
hybrid contribution 0.431 2.108 0.506 2.211
sum -0.681 -11.384 -10.569 15.549
Atomic orbital electron populations
1.69805 1.06285 1.25532 1.59762 1.25289 0.95932 1.00127 1.04323
0.85395 0.77714 0.80914 0.77229 1.21521 1.23403 1.19992 1.19403
0.91077 0.84471 1.40063 0.90580 1.42534 1.05220 1.00266 1.87973
1.20116 0.93879 0.84787 0.92746 0.92075 1.21461 0.98078 0.97503
0.82277 1.45813 1.50903 1.21375 1.18008 1.17268 0.78256 0.84209
0.83688 1.90819 1.58035 1.22960 1.71972 1.20346 1.11008 0.91174
0.95739 1.42106 1.40042 1.15402 1.14941 0.73325 1.22613 0.97606
1.01118 0.87854 1.21158 1.07530 0.95092 0.99639 1.18855 0.99288
0.94205 0.94887 1.18332 0.93793 0.91203 1.00124 1.21108 0.99247
0.92984 0.96993 1.21275 0.96380 0.96936 1.00868 1.21472 0.93424
1.00189 0.99242 1.21342 1.00895 0.92600 1.00018 1.21370 0.93649
0.98094 1.00498 1.23051 1.05091 0.96780 0.94092 1.22773 0.96808
1.03075 0.98443 1.22836 0.93324 1.01108 1.03259 0.94427 0.79451
0.93147 0.90086 0.76029 0.77065 0.81830 0.88097 0.85021 0.83759
0.83586 0.85132 0.86756 0.90439 0.89194 0.88066 0.90272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -54.40 13.06 21.65 0.28 -54.12 16
2 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16
3 Si 0.96 43.04 29.55 68.60 2.03 45.07 16
4 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16
5 H -0.31 -14.45 7.11 99.48 0.71 -13.75 16
6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16
7 C -0.22 -10.49 8.15 84.03 0.69 -9.81 16
8 H 0.08 3.56 6.91 -2.91 -0.02 3.54 16
9 N -0.72 -31.11 3.08 -322.94 -0.99 -32.11 16
10 C 0.19 6.74 2.86 44.99 0.13 6.87 16
11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16
12 C 0.13 4.31 5.22 86.38 0.45 4.76 16
13 N -0.71 -23.31 5.38 -467.35 -2.52 -25.83 16
14 C 0.58 20.23 7.76 86.36 0.67 20.90 16
15 O -0.56 -22.24 13.42 -4.45 -0.06 -22.30 16
16 C -0.07 -2.13 7.07 40.56 0.29 -1.84 16
17 N -0.53 -12.66 5.98 -183.14 -1.10 -13.76 16
18 H 0.43 9.16 8.18 -92.71 -0.76 8.40 16
19 C 0.04 0.85 11.86 83.39 0.99 1.84 16
20 C -0.21 -4.74 10.73 22.21 0.24 -4.50 16
21 C -0.06 -1.86 5.67 -19.77 -0.11 -1.97 16
22 C -0.03 -1.02 5.27 -20.05 -0.11 -1.13 16
23 C -0.08 -2.60 7.63 22.50 0.17 -2.43 16
24 C -0.14 -3.53 10.03 22.24 0.22 -3.30 16
25 C -0.13 -2.77 10.04 22.32 0.22 -2.54 16
26 C -0.13 -2.88 10.03 22.24 0.22 -2.66 16
27 C -0.12 -3.04 9.73 22.50 0.22 -2.83 16
28 C -0.17 -5.46 5.71 -10.79 -0.06 -5.52 16
29 C -0.17 -6.27 9.74 30.62 0.30 -5.97 16
30 C -0.17 -5.57 9.87 30.62 0.30 -5.27 16
31 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16
32 H 0.37 18.30 7.80 -92.71 -0.72 17.58 16
33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16
35 H 0.40 12.96 7.26 -92.71 -0.67 12.28 16
36 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16
37 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16
38 H 0.10 3.33 7.35 -2.91 -0.02 3.30 16
39 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16
40 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16
41 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16
42 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16
43 H 0.11 3.13 8.11 -2.39 -0.02 3.11 16
44 H 0.08 3.49 6.68 -2.38 -0.02 3.48 16
45 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16
46 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16
47 H 0.08 3.00 6.22 -2.39 -0.01 2.99 16
Total: -1.00 -65.04 390.49 1.81 -63.23
By element:
Atomic # 1 Polarization: 59.20 SS G_CDS: -1.13 Total: 58.06 kcal
Atomic # 6 Polarization: -23.55 SS G_CDS: 5.30 Total: -18.25 kcal
Atomic # 7 Polarization: -121.49 SS G_CDS: -4.32 Total: -125.81 kcal
Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal
Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal
Total: -65.04 1.81 -63.23 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001265375665.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.473 kcal
(2) G-P(sol) polarization free energy of solvation -65.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.431 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.234 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds