Wall clock time and date at job start Tue Mar 31 2020 22:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46749 * 299.99736 * 3 2 1 6 6 H 1.48496 * 109.47217 * 59.99271 * 3 2 1 7 7 C 1.38818 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99588 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64828 * 359.97254 * 9 7 2 11 11 C 1.54916 * 104.82921 * 155.90416 * 10 9 7 12 12 C 1.55155 * 101.58019 * 37.01555 * 11 10 9 13 13 H 1.08994 * 110.72220 * 83.03681 * 12 11 10 14 14 C 1.53002 * 110.71977 * 206.13231 * 12 11 10 15 15 C 1.52998 * 109.47422 * 182.56118 * 14 12 11 16 16 N 1.46497 * 109.47298 * 180.02562 * 15 14 12 17 17 C 1.34770 * 119.99922 * 179.97438 * 16 15 14 18 18 O 1.21588 * 120.00090 * 359.97438 * 17 16 15 19 19 C 1.47557 * 119.99865 * 179.97438 * 17 16 15 20 20 C 1.38689 * 120.38661 * 354.05127 * 19 17 16 21 21 C 1.38971 * 120.53567 * 179.66666 * 20 19 17 22 22 C 1.36209 * 121.23730 * 0.62213 * 21 20 19 23 23 C 1.40716 * 120.19724 * 359.40292 * 22 21 20 24 24 N 1.33692 * 120.93743 * 180.25207 * 23 22 21 25 25 C 1.31066 * 121.34091 * 179.97438 * 24 23 22 26 26 C 1.39335 * 121.70639 * 0.04823 * 25 24 23 27 27 C 1.36681 * 119.86680 * 359.97131 * 26 25 24 28 28 C 1.40466 * 118.17142 * 0.02562 * 27 26 25 29 29 C 1.47324 * 125.61931 * 180.19852 * 9 7 2 30 30 H 0.96998 * 120.00026 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.36192 * 37.07510 * 10 9 7 32 32 H 1.08993 * 110.46354 * 274.79689 * 10 9 7 33 33 H 1.08994 * 111.00562 * 278.93924 * 11 10 9 34 34 H 1.08997 * 111.03102 * 155.10010 * 11 10 9 35 35 H 1.08999 * 109.46822 * 62.55790 * 14 12 11 36 36 H 1.08999 * 109.47050 * 302.55964 * 14 12 11 37 37 H 1.09003 * 109.47161 * 59.99556 * 15 14 12 38 38 H 1.09007 * 109.46698 * 299.99655 * 15 14 12 39 39 H 0.96994 * 119.99777 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.73220 * 0.02562 * 20 19 17 41 41 H 1.08006 * 119.38475 * 180.30227 * 21 20 19 42 42 H 1.08001 * 119.90407 * 179.68033 * 22 21 20 43 43 H 1.07994 * 119.14432 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.06731 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.91059 * 180.02562 * 27 26 25 46 46 H 1.09000 * 110.06109 * 61.67954 * 29 9 7 47 47 H 1.09000 * 109.84590 * 300.42435 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6108 12 6 0.7783 -4.7525 -0.0253 13 1 0.5445 -5.1003 0.9809 14 6 1.1231 -5.9318 -0.9370 15 6 2.2452 -6.7560 -0.3026 16 7 2.5757 -7.8848 -1.1759 17 6 3.5429 -8.7526 -0.8184 18 8 4.1414 -8.5984 0.2287 19 6 3.8755 -9.8899 -1.6977 20 6 3.1182 -10.1451 -2.8313 21 6 3.4328 -11.2112 -3.6653 22 6 4.4790 -12.0388 -3.3898 23 6 5.2747 -11.8184 -2.2504 24 7 6.3081 -12.6184 -1.9685 25 6 7.0548 -12.4201 -0.9097 26 6 6.8099 -11.3701 -0.0271 27 6 5.7682 -10.5159 -0.2579 28 6 4.9715 -10.7333 -1.3942 29 6 1.9337 -3.7299 0.0052 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5993 -1.7591 -0.6155 32 1 -0.5292 -2.4857 1.0182 33 1 -0.3519 -3.8989 -1.6991 34 1 -1.3590 -4.3332 -0.2778 35 1 1.4510 -5.5574 -1.9068 36 1 0.2415 -6.5590 -1.0688 37 1 1.9173 -7.1302 0.6673 38 1 3.1268 -6.1287 -0.1708 39 1 2.0985 -8.0075 -2.0113 40 1 2.2807 -9.5067 -3.0708 41 1 2.8335 -11.3900 -4.5459 42 1 4.7011 -12.8641 -4.0501 43 1 7.8810 -13.0881 -0.7162 44 1 7.4419 -11.2315 0.8376 45 1 5.5633 -9.6962 0.4148 46 1 2.5274 -3.8682 0.9088 47 1 2.5623 -3.8544 -0.8765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267560403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:36 Heat of formation + Delta-G solvation = 46.125999 kcal Electronic energy + Delta-G solvation = -27772.128536 eV Core-core repulsion = 23920.360938 eV Total energy + Delta-G solvation = -3851.767598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40063 -39.68375 -37.85894 -37.28576 -35.45205 -33.63461 -33.15044 -31.31992 -30.92328 -30.19498 -28.93395 -26.70124 -25.15656 -24.65534 -23.82528 -23.44887 -22.16170 -20.98056 -20.12253 -19.41885 -18.55780 -17.92778 -17.19284 -16.87893 -16.43921 -16.06862 -15.82510 -15.17721 -15.14571 -14.72424 -14.56672 -14.49303 -14.12416 -13.67731 -13.65900 -13.51308 -13.05663 -12.59119 -12.49898 -12.30002 -12.15530 -11.92664 -11.75346 -11.71860 -11.59607 -11.11023 -10.91312 -10.80850 -10.77828 -10.49640 -10.15740 -10.03871 -9.95159 -9.76901 -9.55733 -9.43304 -9.30175 -9.19972 -8.65299 -8.64348 -6.81484 -5.64395 -3.05599 -0.23775 0.43422 1.41231 2.28914 2.84884 2.93394 3.39947 3.45626 3.48092 3.78519 3.88794 4.20214 4.28733 4.42207 4.49827 4.50378 4.70496 4.73918 4.87244 4.95210 5.04749 5.06438 5.24784 5.37084 5.44062 5.48153 5.56430 5.58063 5.59314 5.71331 5.76928 5.82592 5.85562 5.96463 5.99355 6.10168 6.18095 6.23027 6.31790 6.37306 6.42548 6.59617 6.62405 6.75978 6.96680 7.22128 7.53282 7.53418 7.64545 7.86748 7.93751 8.37657 9.23725 9.84566 10.49921 11.39634 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.001897 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.489138 B =14754.675437 C =15419.477331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.117 4.117 15 C 0.116 3.884 16 N -0.719 5.719 17 C 0.558 3.442 18 O -0.533 6.533 19 C -0.110 4.110 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.066 4.066 23 C 0.118 3.882 24 N -0.480 5.480 25 C 0.133 3.867 26 C -0.179 4.179 27 C -0.060 4.060 28 C -0.067 4.067 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.179 0.821 46 H 0.020 0.980 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.182 -26.409 -6.309 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.007 4.007 16 N -0.369 5.369 17 C 0.346 3.654 18 O -0.412 6.412 19 C -0.114 4.114 20 C -0.094 4.094 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.003 4.003 24 N -0.188 5.188 25 C -0.039 4.039 26 C -0.199 4.199 27 C -0.085 4.085 28 C -0.070 4.070 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.196 0.804 46 H 0.038 0.962 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.662 -26.709 -6.186 28.214 hybrid contribution 0.083 1.417 0.242 1.440 sum 6.745 -25.292 -5.944 26.843 Atomic orbital electron populations 1.69814 1.04875 1.24577 1.57946 1.24794 0.95749 0.97724 1.02643 0.86000 0.78672 0.83639 0.77231 1.20537 1.21765 1.21777 1.19142 0.90542 0.82544 1.42602 0.90497 1.44602 1.01978 0.99794 1.86803 1.21917 0.84678 0.92643 0.98146 1.23038 0.95837 0.98873 0.99961 1.22089 0.97577 0.93722 0.98303 0.90930 1.21805 0.97089 0.96767 0.99866 1.21594 0.99210 0.86419 0.93432 1.46013 1.37908 1.28022 1.24993 1.18093 0.79843 0.81944 0.85528 1.90579 1.51204 1.74571 1.24829 1.19912 0.97531 0.97032 0.96921 1.21455 0.98224 0.96996 0.92747 1.20838 0.97627 0.94725 0.99965 1.21020 0.93391 0.99136 0.94979 1.18866 0.94212 0.92020 0.95237 1.68062 1.04760 1.27175 1.18768 1.23031 0.96649 0.95110 0.89133 1.22093 0.99470 0.96723 1.01587 1.22695 0.91450 0.98979 0.95390 1.18636 0.96024 0.95774 0.96534 1.21426 0.93658 0.85931 0.97698 0.93840 0.87684 0.97149 0.92199 0.92479 0.91086 0.91557 0.91106 0.90577 0.76494 0.84842 0.84384 0.84270 0.82304 0.84274 0.80386 0.96197 0.95912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.09 55.49 0.56 -26.49 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 7 C -0.22 -6.20 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.61 -15.60 3.40 -169.83 -0.58 -16.18 16 10 C 0.15 3.65 5.89 -2.52 -0.01 3.63 16 11 C -0.14 -2.50 6.54 -24.58 -0.16 -2.66 16 12 C -0.10 -1.58 2.95 -88.79 -0.26 -1.84 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -1.40 4.72 -26.73 -0.13 -1.53 16 15 C 0.12 1.39 5.54 -4.04 -0.02 1.36 16 16 N -0.72 -7.25 5.50 -61.34 -0.34 -7.58 16 17 C 0.56 6.70 7.73 -12.46 -0.10 6.60 16 18 O -0.53 -7.94 13.41 5.29 0.07 -7.87 16 19 C -0.11 -1.15 5.90 -104.65 -0.62 -1.76 16 20 C -0.08 -0.55 9.51 -39.14 -0.37 -0.93 16 21 C -0.11 -0.73 9.92 -40.04 -0.40 -1.12 16 22 C -0.07 -0.55 9.96 -39.38 -0.39 -0.94 16 23 C 0.12 1.28 6.60 -84.88 -0.56 0.72 16 24 N -0.48 -5.18 10.34 -10.99 -0.11 -5.29 16 25 C 0.13 1.16 11.15 -17.47 -0.19 0.96 16 26 C -0.18 -1.58 10.03 -39.74 -0.40 -1.98 16 27 C -0.06 -0.68 9.29 -39.31 -0.37 -1.04 16 28 C -0.07 -0.77 5.76 -106.54 -0.61 -1.38 16 29 C 0.14 2.85 6.13 -2.90 -0.02 2.83 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.86 8.00 -51.93 -0.42 0.44 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 39 H 0.40 2.84 6.54 -40.82 -0.27 2.57 16 40 H 0.13 0.60 6.43 -52.49 -0.34 0.26 16 41 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.18 2.21 4.96 -52.50 -0.26 1.95 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -34.15 379.39 -11.14 -45.29 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.57 Total: 1.10 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -4.86 Total: -5.92 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.47 Total: -55.54 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.15 -11.14 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267560403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.414 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds