Wall clock time and date at job start Tue Mar 31 2020 22:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00312 * 2 1 4 4 H 1.48500 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46749 * 299.99736 * 3 2 1 6 6 H 1.48496 * 109.47217 * 59.99271 * 3 2 1 7 7 C 1.38818 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99588 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64828 * 359.97254 * 9 7 2 11 11 C 1.54916 * 104.82921 * 155.90416 * 10 9 7 12 12 C 1.55155 * 101.58019 * 37.01555 * 11 10 9 13 13 H 1.08994 * 110.72220 * 83.03681 * 12 11 10 14 14 C 1.53002 * 110.71977 * 206.13231 * 12 11 10 15 15 C 1.52998 * 109.47422 * 182.56118 * 14 12 11 16 16 N 1.46497 * 109.47298 * 180.02562 * 15 14 12 17 17 C 1.34770 * 119.99922 * 179.97438 * 16 15 14 18 18 O 1.21588 * 120.00090 * 359.97438 * 17 16 15 19 19 C 1.47557 * 119.99865 * 179.97438 * 17 16 15 20 20 C 1.38689 * 120.38661 * 354.05127 * 19 17 16 21 21 C 1.38971 * 120.53567 * 179.66666 * 20 19 17 22 22 C 1.36209 * 121.23730 * 0.62213 * 21 20 19 23 23 C 1.40716 * 120.19724 * 359.40292 * 22 21 20 24 24 N 1.33692 * 120.93743 * 180.25207 * 23 22 21 25 25 C 1.31066 * 121.34091 * 179.97438 * 24 23 22 26 26 C 1.39335 * 121.70639 * 0.04823 * 25 24 23 27 27 C 1.36681 * 119.86680 * 359.97131 * 26 25 24 28 28 C 1.40466 * 118.17142 * 0.02562 * 27 26 25 29 29 C 1.47324 * 125.61931 * 180.19852 * 9 7 2 30 30 H 0.96998 * 120.00026 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.36192 * 37.07510 * 10 9 7 32 32 H 1.08993 * 110.46354 * 274.79689 * 10 9 7 33 33 H 1.08994 * 111.00562 * 278.93924 * 11 10 9 34 34 H 1.08997 * 111.03102 * 155.10010 * 11 10 9 35 35 H 1.08999 * 109.46822 * 62.55790 * 14 12 11 36 36 H 1.08999 * 109.47050 * 302.55964 * 14 12 11 37 37 H 1.09003 * 109.47161 * 59.99556 * 15 14 12 38 38 H 1.09007 * 109.46698 * 299.99655 * 15 14 12 39 39 H 0.96994 * 119.99777 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.73220 * 0.02562 * 20 19 17 41 41 H 1.08006 * 119.38475 * 180.30227 * 21 20 19 42 42 H 1.08001 * 119.90407 * 179.68033 * 22 21 20 43 43 H 1.07994 * 119.14432 * 180.02562 * 25 24 23 44 44 H 1.08002 * 120.06731 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.91059 * 180.02562 * 27 26 25 46 46 H 1.09000 * 110.06109 * 61.67954 * 29 9 7 47 47 H 1.09000 * 109.84590 * 300.42435 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 0.0006 11 6 -0.4016 -3.9326 -0.6108 12 6 0.7783 -4.7525 -0.0253 13 1 0.5445 -5.1003 0.9809 14 6 1.1231 -5.9318 -0.9370 15 6 2.2452 -6.7560 -0.3026 16 7 2.5757 -7.8848 -1.1759 17 6 3.5429 -8.7526 -0.8184 18 8 4.1414 -8.5984 0.2287 19 6 3.8755 -9.8899 -1.6977 20 6 3.1182 -10.1451 -2.8313 21 6 3.4328 -11.2112 -3.6653 22 6 4.4790 -12.0388 -3.3898 23 6 5.2747 -11.8184 -2.2504 24 7 6.3081 -12.6184 -1.9685 25 6 7.0548 -12.4201 -0.9097 26 6 6.8099 -11.3701 -0.0271 27 6 5.7682 -10.5159 -0.2579 28 6 4.9715 -10.7333 -1.3942 29 6 1.9337 -3.7299 0.0052 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5993 -1.7591 -0.6155 32 1 -0.5292 -2.4857 1.0182 33 1 -0.3519 -3.8989 -1.6991 34 1 -1.3590 -4.3332 -0.2778 35 1 1.4510 -5.5574 -1.9068 36 1 0.2415 -6.5590 -1.0688 37 1 1.9173 -7.1302 0.6673 38 1 3.1268 -6.1287 -0.1708 39 1 2.0985 -8.0075 -2.0113 40 1 2.2807 -9.5067 -3.0708 41 1 2.8335 -11.3900 -4.5459 42 1 4.7011 -12.8641 -4.0501 43 1 7.8810 -13.0881 -0.7162 44 1 7.4419 -11.2315 0.8376 45 1 5.5633 -9.6962 0.4148 46 1 2.5274 -3.8682 0.9088 47 1 2.5623 -3.8544 -0.8765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267560403.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:35 Heat of formation + Delta-G solvation = 24.589694 kcal Electronic energy + Delta-G solvation = -27773.062420 eV Core-core repulsion = 23920.360938 eV Total energy + Delta-G solvation = -3852.701482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10725 -40.54934 -39.38521 -37.93832 -36.59695 -34.82143 -34.34542 -32.71176 -31.55893 -31.32206 -30.46740 -28.16370 -26.66922 -25.59603 -24.57527 -24.36706 -23.27861 -21.95916 -21.81733 -20.74010 -19.27725 -18.89366 -18.59720 -17.87219 -17.25911 -17.07075 -16.88171 -16.66439 -16.27553 -15.79448 -15.60740 -15.41059 -15.25802 -14.79667 -14.78255 -14.27124 -14.13753 -13.86952 -13.79614 -13.51631 -13.32583 -13.14350 -13.05049 -12.82433 -12.73906 -12.69404 -12.34315 -12.22328 -11.97970 -11.77781 -11.57398 -11.53004 -11.43211 -11.30047 -11.17879 -10.75433 -10.31054 -10.21785 -9.83483 -9.33210 -8.87839 -7.78204 -5.22162 -0.90919 -0.21061 0.65606 1.44817 1.45742 1.56218 1.63278 2.00805 2.16111 2.48581 3.08946 3.30112 3.30761 3.49832 3.70504 3.74470 3.78180 3.79911 3.85160 3.94860 4.05268 4.14299 4.19971 4.30754 4.36181 4.42122 4.45990 4.64188 4.71115 4.74383 4.77494 4.79069 4.89324 4.99485 5.03521 5.09233 5.14597 5.21390 5.23703 5.27101 5.30701 5.42960 5.44040 5.52418 5.57237 5.70158 5.78139 5.84092 6.32479 6.44585 6.84055 7.11511 7.12156 7.79365 8.43022 9.23562 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.001897 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.489138 B =14754.675437 C =15419.477331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.076 0.924 9 N -0.630 5.630 10 C 0.148 3.852 11 C -0.121 4.121 12 C -0.084 4.084 13 H 0.078 0.922 14 C -0.101 4.101 15 C 0.123 3.877 16 N -0.704 5.704 17 C 0.555 3.445 18 O -0.572 6.572 19 C -0.139 4.139 20 C -0.056 4.056 21 C -0.103 4.103 22 C -0.072 4.072 23 C 0.093 3.907 24 N -0.497 5.497 25 C 0.127 3.873 26 C -0.173 4.173 27 C -0.090 4.090 28 C -0.087 4.087 29 C 0.132 3.868 30 H 0.247 0.753 31 H 0.071 0.929 32 H -0.018 1.018 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.417 0.583 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.193 0.807 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.011 0.989 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 -28.518 -8.378 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.356 5.356 10 C 0.023 3.977 11 C -0.159 4.159 12 C -0.103 4.103 13 H 0.097 0.903 14 C -0.138 4.138 15 C -0.001 4.001 16 N -0.356 5.356 17 C 0.344 3.656 18 O -0.454 6.454 19 C -0.143 4.143 20 C -0.075 4.075 21 C -0.122 4.122 22 C -0.090 4.090 23 C -0.028 4.028 24 N -0.205 5.205 25 C -0.045 4.045 26 C -0.193 4.193 27 C -0.116 4.116 28 C -0.089 4.089 29 C 0.007 3.993 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.000 1.000 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.255 0.745 40 H 0.185 0.815 41 H 0.196 0.804 42 H 0.174 0.826 43 H 0.210 0.790 44 H 0.180 0.820 45 H 0.177 0.823 46 H 0.029 0.971 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.248 -28.850 -8.287 30.660 hybrid contribution 0.238 2.033 0.888 2.232 sum 6.486 -26.817 -7.399 28.565 Atomic orbital electron populations 1.70069 1.06113 1.24899 1.58765 1.25638 0.96715 1.00954 1.02897 0.84989 0.77983 0.79391 0.76854 1.19367 1.21485 1.21950 1.19484 0.90905 0.84086 1.42289 0.90599 1.44954 1.02956 1.00995 1.86688 1.21765 0.83867 0.95698 0.96351 1.22873 0.97920 0.94996 1.00148 1.22002 0.94703 0.93851 0.99774 0.90323 1.21647 0.98327 0.95249 0.98626 1.21362 0.98244 0.86653 0.93799 1.45788 1.37552 1.26955 1.25338 1.18430 0.79536 0.82386 0.85264 1.90571 1.52613 1.75605 1.26622 1.19856 0.98842 0.97188 0.98423 1.21896 0.97754 0.96928 0.90915 1.21287 0.96980 0.93353 1.00614 1.21360 0.93422 0.99965 0.94284 1.19248 0.95028 0.92186 0.96292 1.68102 1.05241 1.27572 1.19624 1.23568 0.97120 0.95360 0.88444 1.22372 0.98744 0.95979 1.02163 1.22661 0.93195 0.99656 0.96060 1.18852 0.96694 0.96542 0.96849 1.21642 0.95331 0.85010 0.97276 0.94340 0.91101 1.00002 0.91252 0.89529 0.90524 0.88058 0.91560 0.93045 0.74464 0.81509 0.80395 0.82633 0.79048 0.81977 0.82271 0.97083 0.95473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.22 10.09 21.65 0.22 -57.00 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.24 -13.74 10.28 84.04 0.86 -12.88 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.63 -33.07 3.40 -691.21 -2.35 -35.42 16 10 C 0.15 7.30 5.89 86.86 0.51 7.81 16 11 C -0.12 -4.13 6.54 31.99 0.21 -3.92 16 12 C -0.08 -2.56 2.95 -9.61 -0.03 -2.58 16 13 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.10 -2.07 4.72 30.59 0.14 -1.93 16 15 C 0.12 2.75 5.54 86.38 0.48 3.22 16 16 N -0.70 -12.81 5.50 -466.26 -2.57 -15.38 16 17 C 0.55 13.16 7.73 86.70 0.67 13.83 16 18 O -0.57 -17.87 13.41 -3.99 -0.05 -17.92 16 19 C -0.14 -2.78 5.90 -19.88 -0.12 -2.90 16 20 C -0.06 -0.65 9.51 22.55 0.21 -0.44 16 21 C -0.10 -0.96 9.92 21.97 0.22 -0.74 16 22 C -0.07 -1.02 9.96 22.40 0.22 -0.80 16 23 C 0.09 1.96 6.60 40.27 0.27 2.23 16 24 N -0.50 -10.42 10.34 -188.69 -1.95 -12.37 16 25 C 0.13 2.12 11.15 85.07 0.95 3.07 16 26 C -0.17 -3.09 10.03 22.17 0.22 -2.87 16 27 C -0.09 -2.15 9.29 22.45 0.21 -1.94 16 28 C -0.09 -2.01 5.76 -21.10 -0.12 -2.13 16 29 C 0.13 5.43 6.13 86.67 0.53 5.96 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.07 3.98 5.88 -2.38 -0.01 3.97 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 34 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 35 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.42 7.58 -2.38 -0.02 1.40 16 39 H 0.42 4.40 6.54 -92.71 -0.61 3.80 16 40 H 0.17 0.69 6.43 -2.91 -0.02 0.67 16 41 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.16 4.37 4.96 -3.18 -0.02 4.35 16 46 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.03 1.09 7.73 -2.39 -0.02 1.07 16 Total: -1.00 -79.62 379.39 1.62 -78.00 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.39 Total: 12.13 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.91 Total: -0.56 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -6.65 Total: -120.17 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.62 1.62 -78.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267560403.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.593 kcal (2) G-P(sol) polarization free energy of solvation -79.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds