Wall clock time and date at job start Tue Mar 31 2020 22:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46915 * 239.99755 * 3 2 1 5 5 H 1.48502 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47235 * 119.99971 * 3 2 1 7 7 C 1.38811 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46822 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47452 * 59.99896 * 11 10 9 13 13 O 1.42908 * 109.47216 * 299.99880 * 11 10 9 14 14 C 1.52997 * 109.47339 * 180.02562 * 11 10 9 15 15 N 1.46499 * 109.47555 * 185.00128 * 14 11 10 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 N 1.46491 * 109.46957 * 179.72354 * 18 16 15 20 20 N 1.40318 * 126.32322 * 270.02305 * 19 18 16 21 21 C 1.28873 * 108.11633 * 180.51289 * 20 19 18 22 22 N 1.38012 * 108.82436 * 0.54310 * 21 20 19 23 23 C 1.34317 * 108.31906 * 358.31271 * 22 21 20 24 24 O 1.21820 * 126.32879 * 182.03880 * 23 22 21 25 25 C 1.46716 * 124.17672 * 177.60635 * 22 21 20 26 26 C 1.53293 * 108.65880 * 19.33322 * 25 22 21 27 27 C 1.53232 * 109.36271 * 308.21382 * 26 25 22 28 28 C 1.51122 * 127.45878 * 180.93481 * 21 20 19 29 29 H 0.97005 * 119.99734 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99720 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47052 * 59.99914 * 10 9 7 32 32 H 1.08997 * 109.47289 * 299.99262 * 10 9 7 33 33 H 0.96700 * 113.99815 * 300.00277 * 13 11 10 34 34 H 1.08998 * 109.47382 * 64.99689 * 14 11 10 35 35 H 1.09002 * 109.47216 * 305.00126 * 14 11 10 36 36 H 0.97000 * 119.99484 * 359.97438 * 15 14 11 37 37 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 38 38 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 39 39 H 1.08999 * 109.60808 * 259.58331 * 25 22 21 40 40 H 1.08995 * 109.60481 * 139.08376 * 25 22 21 41 41 H 1.09003 * 109.48659 * 188.24967 * 26 25 22 42 42 H 1.08997 * 109.48976 * 68.18332 * 26 25 22 43 43 H 1.09001 * 109.54742 * 310.86624 * 27 26 25 44 44 H 1.09000 * 109.62525 * 190.63157 * 27 26 25 45 45 H 1.08995 * 109.75314 * 317.33279 * 28 21 20 46 46 H 1.09005 * 109.74636 * 78.01624 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4368 -4.7622 -0.8885 13 8 0.2427 -4.7437 1.1683 14 6 1.8288 -6.1447 0.0018 15 7 0.8814 -7.2557 -0.1180 16 6 1.3314 -8.5259 -0.1383 17 8 2.5208 -8.7492 -0.0578 18 6 0.3572 -9.6684 -0.2677 19 7 1.0901 -10.9369 -0.2719 20 7 1.5929 -11.6026 -1.4001 21 6 2.1649 -12.6872 -1.0035 22 7 2.0490 -12.7757 0.3689 23 6 1.4118 -11.6788 0.8103 24 8 1.1674 -11.4045 1.9718 25 6 2.5394 -13.9054 1.1663 26 6 3.5782 -14.6737 0.3413 27 6 2.9883 -15.0100 -1.0323 28 6 2.8678 -13.7196 -1.8543 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6846 -3.7145 -0.8895 33 1 0.7352 -4.7889 1.9993 34 1 2.3866 -6.2417 0.9332 35 1 2.5209 -6.1651 -0.8400 36 1 -0.0699 -7.0770 -0.1819 37 1 -0.3359 -9.6520 0.5734 38 1 -0.1995 -9.5674 -1.1993 39 1 1.7085 -14.5658 1.4146 40 1 3.0008 -13.5342 2.0813 41 1 3.8438 -15.5956 0.8587 42 1 4.4688 -14.0583 0.2139 43 1 2.0016 -15.4557 -0.9063 44 1 3.6423 -15.7121 -1.5496 45 1 2.2872 -13.9106 -2.7567 46 1 3.8608 -13.3600 -2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268327576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:33 Heat of formation + Delta-G solvation = -31.049598 kcal Electronic energy + Delta-G solvation = -28846.975093 eV Core-core repulsion = 24581.011647 eV Total energy + Delta-G solvation = -4265.963446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.85622 -39.82326 -38.05568 -37.59338 -37.06349 -34.42826 -33.98365 -33.88371 -32.88713 -31.31708 -29.81382 -29.08608 -27.98447 -25.53469 -24.55536 -23.11419 -22.70911 -21.94879 -21.43730 -20.46419 -20.20918 -17.93481 -17.68718 -17.15210 -16.75733 -16.73375 -16.21029 -15.97058 -15.89187 -15.22231 -15.02682 -14.83030 -14.79052 -14.62232 -14.46622 -13.92550 -13.79648 -13.57449 -13.27988 -13.08584 -12.95384 -12.50966 -12.38928 -12.25369 -12.18219 -11.82453 -11.74274 -11.61812 -11.57418 -10.95763 -10.80228 -10.70445 -10.58840 -10.44637 -10.20215 -9.99013 -9.79699 -9.49915 -9.15842 -8.89711 -8.75266 -6.93777 -5.75702 -3.05470 1.36915 1.64375 2.42416 2.46574 2.62837 3.12286 3.44686 3.48843 3.50111 3.77477 3.98093 4.07463 4.16365 4.43927 4.50720 4.56741 4.68013 4.73040 4.75454 4.82586 4.87896 4.88930 5.04204 5.09848 5.15488 5.22036 5.24916 5.33572 5.51856 5.55777 5.58740 5.60922 5.76386 5.82951 5.95066 6.19155 6.21878 6.34107 6.50936 6.67414 7.35510 7.36277 7.68327 7.80716 7.94362 8.08107 8.42443 9.54073 10.10569 10.46674 11.46481 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033943 B = 0.001677 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.720859 B =16693.498369 C =16884.694448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.090 3.910 12 H 0.105 0.895 13 O -0.552 6.552 14 C 0.091 3.909 15 N -0.717 5.717 16 C 0.495 3.505 17 O -0.530 6.530 18 C 0.144 3.856 19 N -0.439 5.439 20 N -0.268 5.268 21 C 0.277 3.723 22 N -0.556 5.556 23 C 0.657 3.343 24 O -0.552 6.552 25 C 0.131 3.869 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.040 4.040 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.023 0.977 32 H 0.028 0.972 33 H 0.374 0.626 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.406 0.594 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -36.119 -3.256 36.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.030 3.970 12 H 0.123 0.877 13 O -0.357 6.357 14 C -0.033 4.033 15 N -0.370 5.370 16 C 0.278 3.722 17 O -0.406 6.406 18 C 0.018 3.982 19 N -0.258 5.258 20 N -0.090 5.090 21 C -0.001 4.001 22 N -0.286 5.286 23 C 0.357 3.643 24 O -0.426 6.426 25 C 0.009 3.991 26 C -0.176 4.176 27 C -0.162 4.162 28 C -0.080 4.080 29 H 0.066 0.934 30 H 0.224 0.776 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.222 0.778 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.241 0.759 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.113 -35.246 -3.560 35.562 hybrid contribution 0.417 0.817 1.017 1.369 sum 3.530 -34.428 -2.544 34.702 Atomic orbital electron populations 1.69669 1.05097 1.25787 1.57229 1.24759 0.95536 0.97715 1.02802 0.86249 0.78503 0.83450 0.77843 1.21256 1.21632 1.21256 1.19178 0.90975 0.84125 1.43346 0.91278 1.42214 1.06107 0.99315 1.89370 1.21191 0.93522 0.86634 0.98882 1.22385 0.93284 0.91642 0.89714 0.87698 1.86571 1.36998 1.96404 1.15726 1.22127 0.92318 0.85816 1.03031 1.45828 1.11412 1.05142 1.74602 1.20893 0.90039 0.84261 0.76968 1.90734 1.16740 1.84448 1.48652 1.21211 0.92295 0.77891 1.06762 1.48253 1.53340 1.20708 1.03510 1.76755 1.16326 1.05681 1.10220 1.24274 0.97477 0.95363 0.83032 1.46034 1.54193 1.20637 1.07692 1.16449 0.81376 0.81035 0.85455 1.91091 1.61675 1.74781 1.15024 1.21798 0.97863 0.85165 0.94250 1.21995 0.98244 1.01195 0.96142 1.21721 1.02693 0.96481 0.95335 1.20510 1.00674 0.90207 0.96577 0.93427 0.77628 0.95963 0.95380 0.77843 0.91061 0.90393 0.75854 0.85634 0.85558 0.89974 0.88971 0.88815 0.90306 0.90690 0.89331 0.87589 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.50 5.49 -59.91 -0.33 -18.82 16 10 C 0.13 2.48 5.92 -4.04 -0.02 2.46 16 11 C 0.09 1.39 3.09 -26.73 -0.08 1.30 16 12 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 13 O -0.55 -8.87 13.03 -35.23 -0.46 -9.33 16 14 C 0.09 1.24 5.31 -4.04 -0.02 1.22 16 15 N -0.72 -8.50 5.50 -60.29 -0.33 -8.83 16 16 C 0.49 6.72 7.90 -10.98 -0.09 6.63 16 17 O -0.53 -9.59 16.43 5.55 0.09 -9.50 16 18 C 0.14 1.51 6.87 -5.20 -0.04 1.48 16 19 N -0.44 -5.69 3.12 -66.41 -0.21 -5.89 16 20 N -0.27 -3.15 12.51 33.13 0.41 -2.73 16 21 C 0.28 2.50 7.73 -153.75 -1.19 1.31 16 22 N -0.56 -5.68 3.13 -117.55 -0.37 -6.04 16 23 C 0.66 9.30 8.64 -87.04 -0.75 8.55 16 24 O -0.55 -9.49 17.83 5.08 0.09 -9.40 16 25 C 0.13 0.81 6.88 -3.77 -0.03 0.78 16 26 C -0.14 -0.40 5.94 -26.46 -0.16 -0.56 16 27 C -0.12 -0.25 5.96 -26.37 -0.16 -0.40 16 28 C -0.04 -0.16 6.32 -27.43 -0.17 -0.33 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.60 7.54 -40.82 -0.31 10.29 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.37 5.16 9.04 45.56 0.41 5.57 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.41 3.87 8.47 -40.82 -0.35 3.53 16 37 H 0.13 1.10 8.12 -51.93 -0.42 0.68 16 38 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 43 H 0.07 0.15 8.11 -51.93 -0.42 -0.27 16 44 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 45 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -40.70 390.26 -8.59 -49.29 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.12 Total: 10.64 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -2.95 Total: 14.89 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.10 Total: -70.09 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.28 Total: -28.23 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.70 -8.59 -49.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268327576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.242 kcal (2) G-P(sol) polarization free energy of solvation -40.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds