Wall clock time and date at job start Tue Mar 31 2020 22:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99807 * 2 1 4 4 H 1.48501 * 109.46915 * 239.99755 * 3 2 1 5 5 H 1.48502 * 109.47274 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47235 * 119.99971 * 3 2 1 7 7 C 1.38811 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99912 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00000 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99692 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46822 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47452 * 59.99896 * 11 10 9 13 13 O 1.42908 * 109.47216 * 299.99880 * 11 10 9 14 14 C 1.52997 * 109.47339 * 180.02562 * 11 10 9 15 15 N 1.46499 * 109.47555 * 185.00128 * 14 11 10 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 N 1.46491 * 109.46957 * 179.72354 * 18 16 15 20 20 N 1.40318 * 126.32322 * 270.02305 * 19 18 16 21 21 C 1.28873 * 108.11633 * 180.51289 * 20 19 18 22 22 N 1.38012 * 108.82436 * 0.54310 * 21 20 19 23 23 C 1.34317 * 108.31906 * 358.31271 * 22 21 20 24 24 O 1.21820 * 126.32879 * 182.03880 * 23 22 21 25 25 C 1.46716 * 124.17672 * 177.60635 * 22 21 20 26 26 C 1.53293 * 108.65880 * 19.33322 * 25 22 21 27 27 C 1.53232 * 109.36271 * 308.21382 * 26 25 22 28 28 C 1.51122 * 127.45878 * 180.93481 * 21 20 19 29 29 H 0.97005 * 119.99734 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99720 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47052 * 59.99914 * 10 9 7 32 32 H 1.08997 * 109.47289 * 299.99262 * 10 9 7 33 33 H 0.96700 * 113.99815 * 300.00277 * 13 11 10 34 34 H 1.08998 * 109.47382 * 64.99689 * 14 11 10 35 35 H 1.09002 * 109.47216 * 305.00126 * 14 11 10 36 36 H 0.97000 * 119.99484 * 359.97438 * 15 14 11 37 37 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 38 38 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 39 39 H 1.08999 * 109.60808 * 259.58331 * 25 22 21 40 40 H 1.08995 * 109.60481 * 139.08376 * 25 22 21 41 41 H 1.09003 * 109.48659 * 188.24967 * 26 25 22 42 42 H 1.08997 * 109.48976 * 68.18332 * 26 25 22 43 43 H 1.09001 * 109.54742 * 310.86624 * 27 26 25 44 44 H 1.09000 * 109.62525 * 190.63157 * 27 26 25 45 45 H 1.08995 * 109.75314 * 317.33279 * 28 21 20 46 46 H 1.09005 * 109.74636 * 78.01624 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4368 -4.7622 -0.8885 13 8 0.2427 -4.7437 1.1683 14 6 1.8288 -6.1447 0.0018 15 7 0.8814 -7.2557 -0.1180 16 6 1.3314 -8.5259 -0.1383 17 8 2.5208 -8.7492 -0.0578 18 6 0.3572 -9.6684 -0.2677 19 7 1.0901 -10.9369 -0.2719 20 7 1.5929 -11.6026 -1.4001 21 6 2.1649 -12.6872 -1.0035 22 7 2.0490 -12.7757 0.3689 23 6 1.4118 -11.6788 0.8103 24 8 1.1674 -11.4045 1.9718 25 6 2.5394 -13.9054 1.1663 26 6 3.5782 -14.6737 0.3413 27 6 2.9883 -15.0100 -1.0323 28 6 2.8678 -13.7196 -1.8543 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6846 -3.7145 -0.8895 33 1 0.7352 -4.7889 1.9993 34 1 2.3866 -6.2417 0.9332 35 1 2.5209 -6.1651 -0.8400 36 1 -0.0699 -7.0770 -0.1819 37 1 -0.3359 -9.6520 0.5734 38 1 -0.1995 -9.5674 -1.1993 39 1 1.7085 -14.5658 1.4146 40 1 3.0008 -13.5342 2.0813 41 1 3.8438 -15.5956 0.8587 42 1 4.4688 -14.0583 0.2139 43 1 2.0016 -15.4557 -0.9063 44 1 3.6423 -15.7121 -1.5496 45 1 2.2872 -13.9106 -2.7567 46 1 3.8608 -13.3600 -2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268327576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:32 Heat of formation + Delta-G solvation = -64.606362 kcal Electronic energy + Delta-G solvation = -28848.430224 eV Core-core repulsion = 24581.011647 eV Total energy + Delta-G solvation = -4267.418577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67022 -40.92966 -39.06674 -38.77473 -37.79757 -36.10265 -35.39678 -34.51013 -33.61193 -33.20183 -31.01311 -29.88115 -28.98843 -26.98278 -25.36686 -24.33482 -23.65768 -22.91647 -22.80215 -21.56782 -20.69287 -19.31230 -18.84805 -18.53320 -17.80694 -17.62312 -17.28283 -17.05629 -16.89242 -16.44653 -16.20189 -16.01152 -15.55815 -15.48209 -15.20497 -15.16189 -14.94039 -14.64889 -14.37300 -14.21868 -13.99524 -13.97210 -13.51717 -13.21528 -13.09059 -12.96233 -12.92715 -12.73238 -12.21614 -12.09001 -12.00630 -11.89066 -11.85848 -11.82778 -11.57766 -11.36530 -11.10335 -10.97941 -10.76189 -10.26410 -9.67871 -9.02696 -7.95863 -5.25633 0.56971 0.91733 1.40927 1.44955 1.46775 1.49853 1.56142 1.90155 2.14125 2.55205 3.19656 3.34008 3.42099 3.54440 3.56116 3.64003 3.74453 3.84073 3.92047 3.99721 4.09086 4.17639 4.32911 4.37555 4.37627 4.43964 4.54081 4.56895 4.65245 4.77840 4.87350 4.88957 4.90357 4.99452 5.05929 5.16503 5.17495 5.25211 5.34816 5.46412 5.58403 6.24850 6.36504 6.52864 6.74638 6.84495 7.05611 7.32339 8.07171 8.31170 9.26911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033943 B = 0.001677 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.720859 B =16693.498369 C =16884.694448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.738 5.738 10 C 0.122 3.878 11 C 0.110 3.890 12 H 0.108 0.892 13 O -0.562 6.562 14 C 0.104 3.896 15 N -0.703 5.703 16 C 0.494 3.506 17 O -0.580 6.580 18 C 0.141 3.859 19 N -0.446 5.446 20 N -0.300 5.300 21 C 0.286 3.714 22 N -0.554 5.554 23 C 0.637 3.363 24 O -0.598 6.598 25 C 0.118 3.882 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.041 4.041 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.027 0.973 32 H 0.034 0.966 33 H 0.384 0.616 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.420 0.580 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.125 0.875 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 -38.232 -4.385 38.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.006 4.006 11 C 0.050 3.950 12 H 0.126 0.874 13 O -0.368 6.368 14 C -0.021 4.021 15 N -0.356 5.356 16 C 0.280 3.720 17 O -0.459 6.459 18 C 0.017 3.983 19 N -0.264 5.264 20 N -0.122 5.122 21 C 0.008 3.992 22 N -0.282 5.282 23 C 0.336 3.664 24 O -0.475 6.475 25 C -0.002 4.002 26 C -0.168 4.168 27 C -0.155 4.155 28 C -0.080 4.080 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.258 0.742 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.968 -37.410 -4.714 37.914 hybrid contribution 0.210 1.369 1.370 1.947 sum 4.177 -36.041 -3.345 36.436 Atomic orbital electron populations 1.69829 1.06616 1.26200 1.58995 1.25601 0.96424 1.01188 1.03431 0.85187 0.77182 0.79024 0.78178 1.20313 1.22013 1.20459 1.19607 0.91498 0.85400 1.41924 0.90700 1.42375 1.05774 1.00612 1.89391 1.21389 0.94271 0.85901 0.99023 1.22100 0.92275 0.90861 0.89774 0.87441 1.86552 1.37521 1.96374 1.16372 1.21849 0.92180 0.85337 1.02741 1.45679 1.11894 1.04381 1.73688 1.21437 0.89833 0.85050 0.75687 1.90707 1.18962 1.85168 1.51106 1.21466 0.91532 0.76117 1.09211 1.48493 1.53212 1.21083 1.03646 1.76761 1.18431 1.07101 1.09920 1.25351 0.95746 0.95216 0.82889 1.46323 1.52976 1.20325 1.08611 1.16849 0.82003 0.82282 0.85288 1.91028 1.63666 1.76124 1.16681 1.22197 0.99345 0.84452 0.94241 1.22033 0.96656 1.01551 0.96603 1.21757 1.03595 0.95753 0.94409 1.20891 1.00788 0.89622 0.96716 0.93950 0.78976 0.95489 0.94843 0.76702 0.91582 0.90581 0.74226 0.84110 0.82081 0.88580 0.90392 0.86077 0.90988 0.90269 0.86378 0.85655 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.68 5.49 -343.46 -1.89 -39.56 16 10 C 0.12 4.71 5.92 86.38 0.51 5.22 16 11 C 0.11 3.30 3.09 30.59 0.09 3.40 16 12 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 13 O -0.56 -17.62 13.03 -148.98 -1.94 -19.56 16 14 C 0.10 2.75 5.31 86.38 0.46 3.21 16 15 N -0.70 -16.06 5.50 -463.06 -2.55 -18.61 16 16 C 0.49 13.33 7.90 87.66 0.69 14.02 16 17 O -0.58 -21.38 16.43 -3.04 -0.05 -21.43 16 18 C 0.14 2.89 6.87 85.64 0.59 3.48 16 19 N -0.45 -11.61 3.12 -481.99 -1.50 -13.12 16 20 N -0.30 -6.89 12.51 -49.11 -0.61 -7.50 16 21 C 0.29 4.86 7.73 137.75 1.06 5.93 16 22 N -0.55 -11.25 3.13 -644.24 -2.02 -13.27 16 23 C 0.64 18.57 8.64 179.10 1.55 20.12 16 24 O -0.60 -21.55 17.83 -4.73 -0.08 -21.63 16 25 C 0.12 1.38 6.88 86.44 0.59 1.97 16 26 C -0.13 -0.44 5.94 30.77 0.18 -0.26 16 27 C -0.12 -0.06 5.96 30.83 0.18 0.12 16 28 C -0.04 -0.21 6.32 30.14 0.19 -0.02 16 29 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 30 H 0.38 20.77 7.54 -92.71 -0.70 20.07 16 31 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.38 10.33 9.04 -74.06 -0.67 9.66 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.42 7.39 8.47 -92.71 -0.79 6.60 16 37 H 0.14 2.41 8.12 -2.38 -0.02 2.39 16 38 H 0.16 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.07 0.38 8.10 -2.39 -0.02 0.36 16 43 H 0.08 0.03 8.11 -2.39 -0.02 0.02 16 44 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -90.51 390.26 -2.04 -92.55 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -1.12 Total: 33.20 kcal Atomic # 6 Polarization: 32.51 SS G_CDS: 7.42 Total: 39.92 kcal Atomic # 7 Polarization: -143.34 SS G_CDS: -8.29 Total: -151.63 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -2.08 Total: -62.62 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -90.51 -2.04 -92.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268327576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.945 kcal (2) G-P(sol) polarization free energy of solvation -90.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds