Wall clock time and date at job start Tue Mar 31 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47445 * 270.00019 * 3 2 1 5 5 H 1.48501 * 109.46944 * 30.00105 * 3 2 1 6 6 H 1.48503 * 109.46995 * 149.99757 * 3 2 1 7 7 C 1.38809 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00128 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47243 * 305.00061 * 11 10 9 13 13 O 1.42904 * 109.47121 * 65.00175 * 11 10 9 14 14 C 1.53001 * 109.47182 * 184.99644 * 11 10 9 15 15 N 1.46493 * 109.47084 * 179.97438 * 14 11 10 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 14 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 14 19 19 N 1.46497 * 109.47115 * 180.02562 * 18 16 15 20 20 N 1.40322 * 126.32518 * 270.02628 * 19 18 16 21 21 C 1.28872 * 108.11969 * 180.51158 * 20 19 18 22 22 N 1.38015 * 108.81939 * 0.53971 * 21 20 19 23 23 C 1.34322 * 108.32228 * 358.31787 * 22 21 20 24 24 O 1.21815 * 126.32554 * 182.03298 * 23 22 21 25 25 C 1.46723 * 124.17206 * 177.60900 * 22 21 20 26 26 C 1.53285 * 108.66090 * 19.33400 * 25 22 21 27 27 C 1.53235 * 109.36195 * 308.21570 * 26 25 22 28 28 C 1.51108 * 127.46200 * 180.94080 * 21 20 19 29 29 H 0.97003 * 119.99833 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00104 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47411 * 60.00314 * 10 9 7 32 32 H 1.09002 * 109.46888 * 300.00156 * 10 9 7 33 33 H 0.96701 * 114.00027 * 59.99767 * 13 11 10 34 34 H 1.09007 * 109.46593 * 60.00081 * 14 11 10 35 35 H 1.09006 * 109.47216 * 300.00539 * 14 11 10 36 36 H 0.97000 * 120.00740 * 359.72857 * 15 14 11 37 37 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 38 38 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 39 39 H 1.09004 * 109.60452 * 259.58026 * 25 22 21 40 40 H 1.08995 * 109.60477 * 139.08998 * 25 22 21 41 41 H 1.09003 * 109.48558 * 188.25079 * 26 25 22 42 42 H 1.08996 * 109.49105 * 68.18649 * 26 25 22 43 43 H 1.08999 * 109.54666 * 310.86723 * 27 26 25 44 44 H 1.09002 * 109.62369 * 190.63629 * 27 26 25 45 45 H 1.09007 * 109.75014 * 317.32472 * 28 21 20 46 46 H 1.08994 * 109.75543 * 78.00697 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7130 0.8403 13 8 0.3220 -4.8115 -1.2226 14 6 1.8245 -6.1412 0.1244 15 7 0.8725 -7.2546 0.1244 16 6 1.3183 -8.5225 0.2266 17 8 2.5080 -8.7418 0.3136 18 6 0.3386 -9.6675 0.2328 19 7 1.0670 -10.9328 0.3531 20 7 1.5513 -11.7169 -0.7051 21 6 2.1252 -12.7562 -0.2037 22 7 2.0288 -12.6979 1.1718 23 6 1.4017 -11.5573 1.5033 24 8 1.1750 -11.1603 2.6324 25 6 2.5269 -13.7391 2.0777 26 6 3.5511 -14.5956 1.3245 27 6 2.9403 -15.0728 0.0027 28 6 2.8124 -13.8763 -0.9498 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.8683 -4.9027 -2.0152 34 1 2.3904 -6.1475 1.0561 35 1 2.5091 -6.2479 -0.7171 36 1 -0.0790 -7.0793 0.0553 37 1 -0.3419 -9.5588 1.0773 38 1 -0.2315 -9.6629 -0.6962 39 1 1.6975 -14.3654 2.4063 40 1 3.0027 -13.2752 2.9416 41 1 3.8210 -15.4587 1.9330 42 1 4.4418 -14.0015 1.1201 43 1 1.9540 -15.4977 0.1891 44 1 3.5843 -15.8291 -0.4462 45 1 2.2181 -14.1591 -1.8187 46 1 3.8024 -13.5523 -1.2705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268327579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:36 Heat of formation + Delta-G solvation = -31.236164 kcal Electronic energy + Delta-G solvation = -28843.221431 eV Core-core repulsion = 24577.249894 eV Total energy + Delta-G solvation = -4265.971536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.85526 -39.82492 -38.05937 -37.60327 -37.06343 -34.42017 -34.00379 -33.88313 -32.88714 -31.33235 -29.81242 -29.08654 -27.98620 -25.53562 -24.55603 -23.11351 -22.70793 -21.94444 -21.44815 -20.47275 -20.20890 -17.93727 -17.68631 -17.16253 -16.74626 -16.73773 -16.24084 -15.95821 -15.87718 -15.27231 -14.94647 -14.84437 -14.80650 -14.66729 -14.45561 -13.90803 -13.81426 -13.56787 -13.27987 -13.08296 -12.95843 -12.53051 -12.38256 -12.25316 -12.18843 -11.83090 -11.74237 -11.61838 -11.57376 -10.96775 -10.81784 -10.70374 -10.59742 -10.44618 -10.18416 -9.98327 -9.80365 -9.51358 -9.15679 -8.90551 -8.75269 -6.94182 -5.76292 -3.05995 1.36936 1.64382 2.42534 2.46601 2.62849 3.12241 3.43956 3.48934 3.50806 3.77497 3.98106 4.07479 4.16414 4.43884 4.50461 4.56703 4.68097 4.72809 4.75292 4.82643 4.88198 4.88315 5.04117 5.09855 5.15517 5.21893 5.23580 5.33594 5.51883 5.55636 5.58857 5.61769 5.77093 5.82746 5.94638 6.18271 6.21933 6.34127 6.51121 6.66668 7.35846 7.36494 7.68487 7.80758 7.91665 8.08362 8.41767 9.53469 10.09746 10.45595 11.46037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033514 B = 0.001671 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.274338 B =16753.793681 C =16791.106917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.552 6.552 14 C 0.091 3.909 15 N -0.717 5.717 16 C 0.495 3.505 17 O -0.530 6.530 18 C 0.144 3.856 19 N -0.439 5.439 20 N -0.268 5.268 21 C 0.277 3.723 22 N -0.556 5.556 23 C 0.657 3.343 24 O -0.552 6.552 25 C 0.131 3.869 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.040 4.040 29 H 0.255 0.745 30 H 0.388 0.612 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.373 0.627 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.407 0.593 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -36.429 -1.518 36.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.030 3.970 12 H 0.124 0.876 13 O -0.357 6.357 14 C -0.033 4.033 15 N -0.370 5.370 16 C 0.278 3.722 17 O -0.406 6.406 18 C 0.019 3.981 19 N -0.258 5.258 20 N -0.090 5.090 21 C -0.001 4.001 22 N -0.286 5.286 23 C 0.357 3.643 24 O -0.426 6.426 25 C 0.009 3.991 26 C -0.176 4.176 27 C -0.162 4.162 28 C -0.080 4.080 29 H 0.065 0.935 30 H 0.223 0.777 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.220 0.780 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.242 0.758 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.029 -35.525 -1.034 35.669 hybrid contribution 0.433 0.877 0.329 1.032 sum 3.463 -34.648 -0.705 34.828 Atomic orbital electron populations 1.69679 1.05103 1.25681 1.57340 1.24761 0.95541 0.97731 1.02820 0.86171 0.78630 0.83735 0.77521 1.21682 1.21717 1.20763 1.19222 0.91015 0.84111 1.43186 0.91208 1.42229 1.06056 0.99377 1.89363 1.21198 0.93510 0.86582 0.98873 1.22402 0.94621 0.91730 0.88293 0.87614 1.86575 1.37518 1.96237 1.15396 1.22112 0.92194 0.85785 1.03221 1.45810 1.11378 1.05202 1.74579 1.20893 0.90093 0.84278 0.76903 1.90734 1.16793 1.84498 1.48556 1.21209 0.92334 0.77848 1.06758 1.48254 1.53678 1.20688 1.03191 1.76754 1.16665 1.02897 1.12661 1.24270 0.97440 0.96391 0.82048 1.46039 1.54530 1.20694 1.07298 1.16450 0.81351 0.81178 0.85340 1.91090 1.61967 1.70394 1.19113 1.21799 0.97848 0.87453 0.91980 1.21993 0.98294 1.00220 0.97067 1.21722 1.02599 0.97004 0.94905 1.20507 1.00880 0.89131 0.97448 0.93473 0.77719 0.95367 0.95913 0.77966 0.90444 0.91011 0.75788 0.85670 0.85523 0.89974 0.88968 0.88815 0.90306 0.90690 0.89332 0.87591 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.52 5.55 -59.91 -0.33 -18.85 16 10 C 0.13 2.50 5.90 -4.04 -0.02 2.47 16 11 C 0.09 1.38 3.09 -26.73 -0.08 1.30 16 12 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 13 O -0.55 -8.56 13.03 -35.23 -0.46 -9.02 16 14 C 0.09 1.24 5.34 -4.04 -0.02 1.22 16 15 N -0.72 -8.49 5.45 -60.29 -0.33 -8.82 16 16 C 0.49 6.71 7.90 -10.98 -0.09 6.62 16 17 O -0.53 -9.59 16.43 5.56 0.09 -9.49 16 18 C 0.14 1.51 6.87 -5.20 -0.04 1.48 16 19 N -0.44 -5.68 3.12 -66.41 -0.21 -5.89 16 20 N -0.27 -3.14 12.51 33.12 0.41 -2.72 16 21 C 0.28 2.49 7.73 -153.76 -1.19 1.31 16 22 N -0.56 -5.68 3.13 -117.55 -0.37 -6.05 16 23 C 0.66 9.31 8.64 -87.04 -0.75 8.56 16 24 O -0.55 -9.51 17.83 5.09 0.09 -9.42 16 25 C 0.13 0.81 6.88 -3.77 -0.03 0.78 16 26 C -0.14 -0.40 5.94 -26.46 -0.16 -0.56 16 27 C -0.12 -0.25 5.96 -26.37 -0.16 -0.40 16 28 C -0.04 -0.16 6.32 -27.44 -0.17 -0.33 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.58 7.67 -40.82 -0.31 10.26 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.37 4.82 9.05 45.56 0.41 5.23 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.41 3.91 8.35 -40.82 -0.34 3.57 16 37 H 0.13 1.09 8.12 -51.93 -0.42 0.67 16 38 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 43 H 0.07 0.15 8.11 -51.93 -0.42 -0.27 16 44 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 45 H 0.11 0.26 8.14 -51.92 -0.42 -0.16 16 46 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -40.71 390.27 -8.59 -49.30 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.12 Total: 10.34 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -2.95 Total: 14.91 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.10 Total: -70.12 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.28 Total: -27.94 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.71 -8.59 -49.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268327579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.068 kcal (2) G-P(sol) polarization free energy of solvation -40.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds