Wall clock time and date at job start Tue Mar 31 2020 22:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47445 * 270.00019 * 3 2 1 5 5 H 1.48501 * 109.46944 * 30.00105 * 3 2 1 6 6 H 1.48503 * 109.46995 * 149.99757 * 3 2 1 7 7 C 1.38809 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00128 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47243 * 305.00061 * 11 10 9 13 13 O 1.42904 * 109.47121 * 65.00175 * 11 10 9 14 14 C 1.53001 * 109.47182 * 184.99644 * 11 10 9 15 15 N 1.46493 * 109.47084 * 179.97438 * 14 11 10 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 14 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 14 19 19 N 1.46497 * 109.47115 * 180.02562 * 18 16 15 20 20 N 1.40322 * 126.32518 * 270.02628 * 19 18 16 21 21 C 1.28872 * 108.11969 * 180.51158 * 20 19 18 22 22 N 1.38015 * 108.81939 * 0.53971 * 21 20 19 23 23 C 1.34322 * 108.32228 * 358.31787 * 22 21 20 24 24 O 1.21815 * 126.32554 * 182.03298 * 23 22 21 25 25 C 1.46723 * 124.17206 * 177.60900 * 22 21 20 26 26 C 1.53285 * 108.66090 * 19.33400 * 25 22 21 27 27 C 1.53235 * 109.36195 * 308.21570 * 26 25 22 28 28 C 1.51108 * 127.46200 * 180.94080 * 21 20 19 29 29 H 0.97003 * 119.99833 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00104 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47411 * 60.00314 * 10 9 7 32 32 H 1.09002 * 109.46888 * 300.00156 * 10 9 7 33 33 H 0.96701 * 114.00027 * 59.99767 * 13 11 10 34 34 H 1.09007 * 109.46593 * 60.00081 * 14 11 10 35 35 H 1.09006 * 109.47216 * 300.00539 * 14 11 10 36 36 H 0.97000 * 120.00740 * 359.72857 * 15 14 11 37 37 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 38 38 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 39 39 H 1.09004 * 109.60452 * 259.58026 * 25 22 21 40 40 H 1.08995 * 109.60477 * 139.08998 * 25 22 21 41 41 H 1.09003 * 109.48558 * 188.25079 * 26 25 22 42 42 H 1.08996 * 109.49105 * 68.18649 * 26 25 22 43 43 H 1.08999 * 109.54666 * 310.86723 * 27 26 25 44 44 H 1.09002 * 109.62369 * 190.63629 * 27 26 25 45 45 H 1.09007 * 109.75014 * 317.32472 * 28 21 20 46 46 H 1.08994 * 109.75543 * 78.00697 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3794 -4.7130 0.8403 13 8 0.3220 -4.8115 -1.2226 14 6 1.8245 -6.1412 0.1244 15 7 0.8725 -7.2546 0.1244 16 6 1.3183 -8.5225 0.2266 17 8 2.5080 -8.7418 0.3136 18 6 0.3386 -9.6675 0.2328 19 7 1.0670 -10.9328 0.3531 20 7 1.5513 -11.7169 -0.7051 21 6 2.1252 -12.7562 -0.2037 22 7 2.0288 -12.6979 1.1718 23 6 1.4017 -11.5573 1.5033 24 8 1.1750 -11.1603 2.6324 25 6 2.5269 -13.7391 2.0777 26 6 3.5511 -14.5956 1.3245 27 6 2.9403 -15.0728 0.0027 28 6 2.8124 -13.8763 -0.9498 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7146 0.8894 32 1 2.6848 -3.7145 -0.8905 33 1 0.8683 -4.9027 -2.0152 34 1 2.3904 -6.1475 1.0561 35 1 2.5091 -6.2479 -0.7171 36 1 -0.0790 -7.0793 0.0553 37 1 -0.3419 -9.5588 1.0773 38 1 -0.2315 -9.6629 -0.6962 39 1 1.6975 -14.3654 2.4063 40 1 3.0027 -13.2752 2.9416 41 1 3.8210 -15.4587 1.9330 42 1 4.4418 -14.0015 1.1201 43 1 1.9540 -15.4977 0.1891 44 1 3.5843 -15.8291 -0.4462 45 1 2.2181 -14.1591 -1.8187 46 1 3.8024 -13.5523 -1.2705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268327579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:35 Heat of formation + Delta-G solvation = -64.816066 kcal Electronic energy + Delta-G solvation = -28844.677564 eV Core-core repulsion = 24577.249894 eV Total energy + Delta-G solvation = -4267.427670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66954 -40.93136 -39.06684 -38.77540 -37.79674 -36.12160 -35.37828 -34.50892 -33.61191 -33.21496 -31.01091 -29.88166 -28.99004 -26.98607 -25.36745 -24.33647 -23.65684 -22.92559 -22.79876 -21.57126 -20.69251 -19.31769 -18.84951 -18.53289 -17.80835 -17.60037 -17.32382 -17.05333 -16.87371 -16.45122 -16.18058 -16.03794 -15.56142 -15.47815 -15.20678 -15.16102 -14.92754 -14.65351 -14.36425 -14.26047 -13.99602 -13.94937 -13.51754 -13.21883 -13.08757 -12.97300 -12.92653 -12.76602 -12.17787 -12.08993 -12.00536 -11.89000 -11.85802 -11.83638 -11.57571 -11.36611 -11.09921 -10.99329 -10.76646 -10.26324 -9.67876 -9.03361 -7.96661 -5.26390 0.56909 0.91819 1.40969 1.44894 1.46598 1.48401 1.56891 1.90079 2.14037 2.54727 3.19651 3.33776 3.43118 3.53815 3.55972 3.64310 3.74531 3.84108 3.91471 3.98198 4.09127 4.18106 4.32864 4.36909 4.37622 4.43897 4.54213 4.56816 4.65105 4.77836 4.87359 4.89013 4.90475 4.99435 5.05956 5.17175 5.17549 5.24228 5.34881 5.46263 5.58479 6.24354 6.36781 6.52901 6.77392 6.84489 7.05848 7.31608 8.06124 8.29902 9.26423 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033514 B = 0.001671 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.274338 B =16753.793681 C =16791.106917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.122 3.878 11 C 0.111 3.889 12 H 0.102 0.898 13 O -0.559 6.559 14 C 0.104 3.896 15 N -0.703 5.703 16 C 0.494 3.506 17 O -0.580 6.580 18 C 0.142 3.858 19 N -0.446 5.446 20 N -0.300 5.300 21 C 0.286 3.714 22 N -0.554 5.554 23 C 0.636 3.364 24 O -0.598 6.598 25 C 0.118 3.882 26 C -0.131 4.131 27 C -0.117 4.117 28 C -0.041 4.041 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.386 0.614 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.420 0.580 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -38.670 -2.627 38.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.382 5.382 10 C -0.005 4.005 11 C 0.051 3.949 12 H 0.120 0.880 13 O -0.366 6.366 14 C -0.021 4.021 15 N -0.356 5.356 16 C 0.280 3.720 17 O -0.459 6.459 18 C 0.017 3.983 19 N -0.264 5.264 20 N -0.122 5.122 21 C 0.008 3.992 22 N -0.282 5.282 23 C 0.336 3.664 24 O -0.475 6.475 25 C -0.002 4.002 26 C -0.168 4.168 27 C -0.155 4.155 28 C -0.080 4.080 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.258 0.742 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.139 0.861 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.885 -37.821 -2.180 38.083 hybrid contribution 0.223 1.467 0.653 1.621 sum 4.108 -36.354 -1.527 36.617 Atomic orbital electron populations 1.69835 1.06627 1.26142 1.59096 1.25604 0.96431 1.01203 1.03455 0.85112 0.77630 0.79315 0.77493 1.21248 1.22076 1.19527 1.19643 0.91516 0.85384 1.41760 0.90661 1.42397 1.05728 1.00683 1.89384 1.21400 0.94258 0.85840 0.99028 1.22053 0.93490 0.90972 0.88411 0.88011 1.86557 1.37989 1.96178 1.15879 1.21835 0.92092 0.85319 1.02878 1.45662 1.11833 1.04437 1.73681 1.21435 0.89895 0.85067 0.75605 1.90707 1.19008 1.85220 1.51003 1.21464 0.91575 0.76085 1.09191 1.48494 1.53532 1.21154 1.03248 1.76760 1.18788 1.04110 1.12510 1.25351 0.95675 0.96494 0.81684 1.46327 1.53320 1.20134 1.08461 1.16852 0.81981 0.82415 0.85194 1.91027 1.63966 1.71820 1.20712 1.22196 0.99274 0.87018 0.91750 1.22031 0.96758 1.00267 0.97786 1.21758 1.03462 0.96525 0.93769 1.20888 1.01061 0.88052 0.98009 0.93945 0.79065 0.95172 0.95071 0.76525 0.91322 0.90832 0.74200 0.84112 0.82090 0.88586 0.90415 0.86085 0.90985 0.90275 0.86369 0.85639 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -37.77 5.55 -343.45 -1.91 -39.68 16 10 C 0.12 4.73 5.90 86.38 0.51 5.24 16 11 C 0.11 3.34 3.09 30.60 0.09 3.43 16 12 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 13 O -0.56 -16.69 13.03 -148.98 -1.94 -18.63 16 14 C 0.10 2.75 5.34 86.38 0.46 3.22 16 15 N -0.70 -16.07 5.45 -463.05 -2.52 -18.60 16 16 C 0.49 13.32 7.90 87.65 0.69 14.02 16 17 O -0.58 -21.37 16.43 -3.04 -0.05 -21.42 16 18 C 0.14 2.90 6.87 85.63 0.59 3.49 16 19 N -0.45 -11.61 3.12 -482.00 -1.50 -13.11 16 20 N -0.30 -6.85 12.51 -49.12 -0.61 -7.47 16 21 C 0.29 4.85 7.73 137.75 1.06 5.91 16 22 N -0.55 -11.27 3.13 -644.25 -2.02 -13.28 16 23 C 0.64 18.60 8.64 179.10 1.55 20.15 16 24 O -0.60 -21.63 17.83 -4.72 -0.08 -21.71 16 25 C 0.12 1.39 6.88 86.43 0.59 1.98 16 26 C -0.13 -0.44 5.94 30.77 0.18 -0.26 16 27 C -0.12 -0.06 5.96 30.83 0.18 0.13 16 28 C -0.04 -0.21 6.32 30.13 0.19 -0.02 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.38 20.75 7.67 -92.71 -0.71 20.04 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.39 9.39 9.05 -74.06 -0.67 8.72 16 34 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 35 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.42 7.47 8.35 -92.71 -0.77 6.69 16 37 H 0.14 2.40 8.12 -2.39 -0.02 2.38 16 38 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.07 0.38 8.10 -2.39 -0.02 0.36 16 43 H 0.08 0.03 8.11 -2.39 -0.02 0.01 16 44 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 46 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -90.63 390.27 -2.03 -92.66 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -1.12 Total: 32.22 kcal Atomic # 6 Polarization: 32.61 SS G_CDS: 7.41 Total: 40.03 kcal Atomic # 7 Polarization: -143.53 SS G_CDS: -8.28 Total: -151.81 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -2.08 Total: -61.76 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -90.63 -2.03 -92.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268327579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.847 kcal (2) G-P(sol) polarization free energy of solvation -90.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds