Wall clock time and date at job start Tue Mar 31 2020 22:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15093 * 71.01680 * 3 2 1 5 5 C 1.37931 * 119.84392 * 180.29607 * 4 3 2 6 6 C 1.38378 * 120.15234 * 359.70075 * 5 4 3 7 7 C 1.38342 * 120.30700 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.92401 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.46706 * 270.01837 * 8 7 6 10 10 C 1.46877 * 124.37535 * 269.72436 * 9 8 7 11 11 C 1.54859 * 105.44260 * 163.10560 * 10 9 8 12 12 C 1.53619 * 101.44640 * 24.83501 * 11 10 9 13 13 C 1.53887 * 110.68137 * 96.40595 * 12 11 10 14 14 C 1.55317 * 101.53831 * 156.79926 * 13 12 11 15 15 C 1.54405 * 103.13318 * 325.41273 * 14 13 12 16 16 N 1.46721 * 111.39958 * 214.20037 * 12 11 10 17 17 C 1.46892 * 111.00281 * 94.57437 * 16 12 11 18 18 C 1.50709 * 109.47267 * 189.99866 * 17 16 12 19 19 H 1.08003 * 119.99678 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47586 * 89.99715 * 22 20 18 24 24 H 1.48497 * 109.47502 * 209.99783 * 22 20 18 25 25 H 1.48505 * 109.47193 * 329.99627 * 22 20 18 26 26 C 1.34749 * 124.37343 * 90.02968 * 9 8 7 27 27 O 1.21281 * 125.12863 * 0.95675 * 26 9 8 28 28 C 1.37969 * 120.14855 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.07851 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.92097 * 179.72314 * 5 4 3 31 31 H 1.08006 * 119.84863 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47210 * 30.01759 * 8 7 6 33 33 H 1.08996 * 109.46811 * 150.01798 * 8 7 6 34 34 H 1.09002 * 110.23891 * 282.23310 * 10 9 8 35 35 H 1.09001 * 110.23810 * 44.20784 * 10 9 8 36 36 H 1.09003 * 111.21101 * 266.72888 * 11 10 9 37 37 H 1.09000 * 110.88706 * 142.79638 * 11 10 9 38 38 H 1.08998 * 111.00933 * 274.86577 * 13 12 11 39 39 H 1.09003 * 111.01140 * 38.73543 * 13 12 11 40 40 H 1.09006 * 110.68586 * 207.00198 * 14 13 12 41 41 H 1.09002 * 110.82996 * 83.89314 * 14 13 12 42 42 H 1.09005 * 109.89518 * 262.78842 * 15 14 13 43 43 H 1.09001 * 109.89222 * 141.58724 * 15 14 13 44 44 H 1.09002 * 109.47488 * 309.99524 * 17 16 12 45 45 H 1.08999 * 109.47772 * 69.99899 * 17 16 12 46 46 H 0.96996 * 120.00033 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.07258 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.3919 -1.1419 5 6 4.6489 -0.3947 -1.1329 6 6 5.3374 -0.0039 0.0021 7 6 4.6487 0.3915 1.1349 8 6 5.4072 0.8160 2.3659 9 7 5.6488 -0.3515 3.2173 10 6 4.7408 -0.8061 4.2785 11 6 5.1672 -2.2618 4.5904 12 6 6.6360 -2.2523 4.1407 13 6 7.5696 -2.0044 5.3387 14 6 8.9006 -2.6209 4.8282 15 6 8.4283 -3.8189 3.9762 16 7 7.0319 -3.5480 3.5776 17 6 6.8917 -3.5516 2.1154 18 6 7.0674 -4.9558 1.5973 19 1 7.2641 -5.7646 2.2855 20 6 6.9782 -5.2078 0.2447 21 7 6.7393 -4.2227 -0.5933 22 14 7.1953 -6.9484 -0.3974 23 1 5.8765 -7.6301 -0.4357 24 1 7.7690 -6.9032 -1.7663 25 1 8.1131 -7.6960 0.4994 26 6 6.7355 -1.1436 3.1318 27 8 7.6552 -0.9854 2.3572 28 6 3.2690 0.3981 1.1400 29 1 2.7335 -0.6974 -2.0282 30 1 5.1927 -0.7023 -2.0138 31 1 6.4174 -0.0084 0.0038 32 1 6.3606 1.2548 2.0720 33 1 4.8226 1.5527 2.9168 34 1 4.8523 -0.1801 5.1639 35 1 3.7092 -0.7835 3.9274 36 1 4.5849 -2.9765 4.0088 37 1 5.0863 -2.4703 5.6572 38 1 7.6819 -0.9377 5.5325 39 1 7.2126 -2.5259 6.2268 40 1 9.5132 -2.9603 5.6635 41 1 9.4493 -1.9055 4.2157 42 1 8.4748 -4.7346 4.5657 43 1 9.0553 -3.9137 3.0897 44 1 5.9014 -3.1857 1.8444 45 1 7.6509 -2.9045 1.6759 46 1 6.6761 -4.4001 -1.5449 47 1 2.7326 0.7067 2.0252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:15 Heat of formation + Delta-G solvation = 40.378275 kcal Electronic energy + Delta-G solvation = -30426.775850 eV Core-core repulsion = 26574.759012 eV Total energy + Delta-G solvation = -3852.016838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93264 -39.39922 -37.16111 -36.40442 -35.99594 -33.27384 -32.81259 -31.19304 -30.90865 -30.25944 -27.53707 -26.29656 -26.23768 -23.84872 -23.47594 -22.33408 -21.87284 -20.85574 -20.23941 -18.49484 -18.24260 -16.47374 -16.25388 -16.06509 -15.74696 -15.52064 -15.36950 -14.84107 -14.49690 -14.19842 -14.04830 -13.87329 -13.55024 -13.30855 -13.21113 -13.04653 -12.85806 -12.69609 -12.48616 -12.17798 -12.07814 -12.01954 -11.71105 -11.66235 -11.49779 -11.29335 -11.09966 -11.05779 -10.83453 -10.66717 -10.58875 -10.30147 -10.11175 -9.75391 -9.46030 -9.14409 -8.87596 -8.78378 -8.47193 -8.36897 -7.20500 -5.95783 -3.96212 0.87415 1.32667 2.64828 2.91091 3.05151 3.34340 3.34981 3.40232 3.43915 3.87833 4.01355 4.43946 4.56895 4.74045 4.77961 4.81919 4.87153 5.01987 5.12768 5.19469 5.25270 5.34191 5.38081 5.39745 5.48115 5.57427 5.61381 5.66108 5.71275 5.84412 5.90566 5.99921 6.02689 6.08672 6.18661 6.28434 6.32653 6.42016 6.47847 6.61728 6.69956 6.73855 6.81347 6.90966 7.18719 7.35100 7.46856 7.59844 7.83484 8.04073 8.22899 8.49682 8.69186 9.10678 9.66118 11.14044 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008363 B = 0.005243 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.081013 B = 5339.102898 C = 7519.506670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.264 3.736 3 C -0.043 4.043 4 C -0.065 4.065 5 C -0.105 4.105 6 C -0.048 4.048 7 C -0.113 4.113 8 C 0.169 3.831 9 N -0.623 5.623 10 C 0.104 3.896 11 C -0.113 4.113 12 C 0.067 3.933 13 C -0.104 4.104 14 C -0.142 4.142 15 C 0.053 3.947 16 N -0.497 5.497 17 C 0.179 3.821 18 C -0.507 4.507 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.274 1.274 26 C 0.515 3.485 27 O -0.507 6.507 28 C -0.059 4.059 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.026 0.974 46 H 0.258 0.742 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 12.080 8.293 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.051 4.051 3 C -0.047 4.047 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.067 4.067 7 C -0.115 4.115 8 C 0.047 3.953 9 N -0.359 5.359 10 C -0.019 4.019 11 C -0.151 4.151 12 C -0.027 4.027 13 C -0.143 4.143 14 C -0.180 4.180 15 C -0.075 4.075 16 N -0.220 5.220 17 C 0.054 3.946 18 C -0.546 4.546 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.721 3.279 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.199 1.199 26 C 0.302 3.698 27 O -0.380 6.380 28 C -0.081 4.081 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.039 0.961 45 H 0.044 0.956 46 H 0.068 0.932 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.084 11.848 7.820 14.772 hybrid contribution 0.811 -0.524 -0.975 1.372 sum -3.273 11.324 6.846 13.631 Atomic orbital electron populations 1.81216 1.12129 1.09523 1.07876 1.25775 0.92700 0.93190 0.93412 1.15901 0.84020 1.08093 0.96660 1.21174 0.94537 0.96316 0.96571 1.21136 0.93355 0.98441 0.99362 1.21446 1.01161 0.92448 0.91677 1.20151 0.93178 1.01874 0.96268 1.20159 1.00219 0.86919 0.87990 1.48457 1.22980 1.29213 1.35251 1.22165 0.94113 0.95789 0.89837 1.22538 0.95126 0.95062 1.02385 1.22035 0.96481 0.90046 0.94186 1.22479 0.95013 1.00392 0.96389 1.22889 0.96822 0.98756 0.99556 1.22729 0.89778 0.96344 0.98649 1.63877 1.20334 1.21890 1.15940 1.20167 0.96953 0.97862 0.79606 1.21121 1.48215 0.93504 0.91724 0.92205 1.24923 0.95612 0.96890 0.96893 1.69979 1.49568 1.30839 1.02582 0.86585 0.78226 0.85045 0.78042 1.20825 1.21400 1.19935 1.21327 0.81250 0.82837 0.84391 1.90687 1.35411 1.72107 1.39809 1.20907 0.93454 0.97438 0.96258 0.85294 0.84663 0.84806 0.89135 0.89691 0.91479 0.90965 0.89025 0.89532 0.91632 0.90048 0.91496 0.91415 0.91673 0.91714 0.96119 0.95578 0.93238 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.63 18.54 41.84 0.78 -5.85 16 2 C 0.26 3.60 15.33 -22.47 -0.34 3.25 16 3 C -0.04 -0.55 5.73 -106.93 -0.61 -1.17 16 4 C -0.07 -0.84 9.76 -39.17 -0.38 -1.22 16 5 C -0.10 -1.48 10.03 -39.64 -0.40 -1.87 16 6 C -0.05 -0.72 9.69 -39.49 -0.38 -1.10 16 7 C -0.11 -1.48 5.46 -104.68 -0.57 -2.05 16 8 C 0.17 2.00 6.07 -5.19 -0.03 1.97 16 9 N -0.62 -8.83 2.93 -173.81 -0.51 -9.33 16 10 C 0.10 1.18 7.37 -2.86 -0.02 1.16 16 11 C -0.11 -1.55 6.47 -25.43 -0.16 -1.72 16 12 C 0.07 1.13 0.68 -132.29 -0.09 1.04 16 13 C -0.10 -1.45 5.97 -25.04 -0.15 -1.60 16 14 C -0.14 -2.20 6.85 -24.77 -0.17 -2.37 16 15 C 0.05 1.03 6.41 -2.64 -0.02 1.01 16 16 N -0.50 -10.49 4.84 -219.63 -1.06 -11.56 16 17 C 0.18 4.64 3.33 -4.98 -0.02 4.62 16 18 C -0.51 -14.26 8.63 -34.44 -0.30 -14.56 16 19 H 0.06 1.68 7.77 -52.48 -0.41 1.27 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 22 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.52 9.38 5.36 -11.23 -0.06 9.32 16 27 O -0.51 -11.13 15.30 5.56 0.08 -11.04 16 28 C -0.06 -0.70 9.41 -39.17 -0.37 -1.07 16 29 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 32 H 0.09 1.11 7.87 -51.93 -0.41 0.70 16 33 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.48 8.12 -51.93 -0.42 1.06 16 37 H 0.09 0.95 7.63 -51.93 -0.40 0.55 16 38 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 39 H 0.08 0.98 7.78 -51.93 -0.40 0.57 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.44 7.30 -51.93 -0.38 1.06 16 44 H 0.02 0.59 7.73 -51.93 -0.40 0.19 16 45 H 0.03 0.76 5.80 -51.93 -0.30 0.46 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -33.47 391.08 -10.17 -43.64 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.90 Total: 1.50 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.17 Total: -4.79 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.06 Total: -51.92 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.47 -10.17 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.018 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds