Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39650 * 120.15093 * 71.01680 * 3 2 1 5 5 C 1.37931 * 119.84392 * 180.29607 * 4 3 2 6 6 C 1.38378 * 120.15234 * 359.70075 * 5 4 3 7 7 C 1.38342 * 120.30700 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.92401 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.46706 * 270.01837 * 8 7 6 10 10 C 1.46877 * 124.37535 * 269.72436 * 9 8 7 11 11 C 1.54859 * 105.44260 * 163.10560 * 10 9 8 12 12 C 1.53619 * 101.44640 * 24.83501 * 11 10 9 13 13 C 1.53887 * 110.68137 * 96.40595 * 12 11 10 14 14 C 1.55317 * 101.53831 * 156.79926 * 13 12 11 15 15 C 1.54405 * 103.13318 * 325.41273 * 14 13 12 16 16 N 1.46721 * 111.39958 * 214.20037 * 12 11 10 17 17 C 1.46892 * 111.00281 * 94.57437 * 16 12 11 18 18 C 1.50709 * 109.47267 * 189.99866 * 17 16 12 19 19 H 1.08003 * 119.99678 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99965 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47586 * 89.99715 * 22 20 18 24 24 H 1.48497 * 109.47502 * 209.99783 * 22 20 18 25 25 H 1.48505 * 109.47193 * 329.99627 * 22 20 18 26 26 C 1.34749 * 124.37343 * 90.02968 * 9 8 7 27 27 O 1.21281 * 125.12863 * 0.95675 * 26 9 8 28 28 C 1.37969 * 120.14855 * 0.02562 * 7 6 5 29 29 H 1.08002 * 120.07851 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.92097 * 179.72314 * 5 4 3 31 31 H 1.08006 * 119.84863 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47210 * 30.01759 * 8 7 6 33 33 H 1.08996 * 109.46811 * 150.01798 * 8 7 6 34 34 H 1.09002 * 110.23891 * 282.23310 * 10 9 8 35 35 H 1.09001 * 110.23810 * 44.20784 * 10 9 8 36 36 H 1.09003 * 111.21101 * 266.72888 * 11 10 9 37 37 H 1.09000 * 110.88706 * 142.79638 * 11 10 9 38 38 H 1.08998 * 111.00933 * 274.86577 * 13 12 11 39 39 H 1.09003 * 111.01140 * 38.73543 * 13 12 11 40 40 H 1.09006 * 110.68586 * 207.00198 * 14 13 12 41 41 H 1.09002 * 110.82996 * 83.89314 * 14 13 12 42 42 H 1.09005 * 109.89518 * 262.78842 * 15 14 13 43 43 H 1.09001 * 109.89222 * 141.58724 * 15 14 13 44 44 H 1.09002 * 109.47488 * 309.99524 * 17 16 12 45 45 H 1.08999 * 109.47772 * 69.99899 * 17 16 12 46 46 H 0.96996 * 120.00033 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.07258 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 -0.3919 -1.1419 5 6 4.6489 -0.3947 -1.1329 6 6 5.3374 -0.0039 0.0021 7 6 4.6487 0.3915 1.1349 8 6 5.4072 0.8160 2.3659 9 7 5.6488 -0.3515 3.2173 10 6 4.7408 -0.8061 4.2785 11 6 5.1672 -2.2618 4.5904 12 6 6.6360 -2.2523 4.1407 13 6 7.5696 -2.0044 5.3387 14 6 8.9006 -2.6209 4.8282 15 6 8.4283 -3.8189 3.9762 16 7 7.0319 -3.5480 3.5776 17 6 6.8917 -3.5516 2.1154 18 6 7.0674 -4.9558 1.5973 19 1 7.2641 -5.7646 2.2855 20 6 6.9782 -5.2078 0.2447 21 7 6.7393 -4.2227 -0.5933 22 14 7.1953 -6.9484 -0.3974 23 1 5.8765 -7.6301 -0.4357 24 1 7.7690 -6.9032 -1.7663 25 1 8.1131 -7.6960 0.4994 26 6 6.7355 -1.1436 3.1318 27 8 7.6552 -0.9854 2.3572 28 6 3.2690 0.3981 1.1400 29 1 2.7335 -0.6974 -2.0282 30 1 5.1927 -0.7023 -2.0138 31 1 6.4174 -0.0084 0.0038 32 1 6.3606 1.2548 2.0720 33 1 4.8226 1.5527 2.9168 34 1 4.8523 -0.1801 5.1639 35 1 3.7092 -0.7835 3.9274 36 1 4.5849 -2.9765 4.0088 37 1 5.0863 -2.4703 5.6572 38 1 7.6819 -0.9377 5.5325 39 1 7.2126 -2.5259 6.2268 40 1 9.5132 -2.9603 5.6635 41 1 9.4493 -1.9055 4.2157 42 1 8.4748 -4.7346 4.5657 43 1 9.0553 -3.9137 3.0897 44 1 5.9014 -3.1857 1.8444 45 1 7.6509 -2.9045 1.6759 46 1 6.6761 -4.4001 -1.5449 47 1 2.7326 0.7067 2.0252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = 19.329410 kcal Electronic energy + Delta-G solvation = -30427.688597 eV Core-core repulsion = 26574.759012 eV Total energy + Delta-G solvation = -3852.929585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22271 -40.49794 -38.52169 -37.61788 -37.27829 -35.14392 -34.09881 -32.61693 -32.28678 -31.42003 -28.75596 -28.24842 -27.33306 -25.00430 -24.83986 -24.01707 -22.97241 -22.08604 -21.65974 -19.81094 -19.34616 -18.37469 -17.57584 -17.35902 -17.08653 -16.75176 -16.56387 -16.37648 -16.00279 -15.46519 -15.26513 -15.07967 -14.90961 -14.65228 -14.52916 -14.24180 -14.10362 -13.97452 -13.84271 -13.70566 -13.41942 -13.26666 -13.09690 -12.95434 -12.80119 -12.71954 -12.51562 -12.41208 -12.28903 -12.12150 -11.96669 -11.95121 -11.65550 -11.39322 -11.24832 -10.81027 -10.57492 -9.94453 -9.89966 -9.60779 -8.89587 -8.14445 -6.24381 -0.22857 0.28083 1.37969 1.39166 1.49867 1.54583 1.65144 1.85934 2.27911 2.40206 2.77411 2.93336 3.15901 3.22736 3.60627 3.64650 3.75208 3.84101 3.90429 3.99726 4.08142 4.20620 4.24568 4.29589 4.31459 4.44338 4.54647 4.66893 4.74533 4.75851 4.79452 4.88350 4.95755 4.98622 5.01680 5.09680 5.16292 5.20286 5.21867 5.32631 5.34671 5.37997 5.51228 5.53670 5.68796 5.73896 5.81746 6.09602 6.20058 6.29418 6.37839 6.61257 6.90684 7.34165 7.43131 8.94731 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008363 B = 0.005243 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3347.081013 B = 5339.102898 C = 7519.506670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.285 3.715 3 C -0.045 4.045 4 C -0.064 4.064 5 C -0.122 4.122 6 C -0.071 4.071 7 C -0.116 4.116 8 C 0.166 3.834 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.110 4.110 12 C 0.050 3.950 13 C -0.091 4.091 14 C -0.134 4.134 15 C 0.049 3.951 16 N -0.506 5.506 17 C 0.214 3.786 18 C -0.529 4.529 19 H 0.056 0.944 20 C 0.006 3.994 21 N -0.920 5.920 22 Si 0.961 3.039 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.267 1.267 26 C 0.501 3.499 27 O -0.562 6.562 28 C -0.044 4.044 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.020 0.980 44 H -0.014 1.014 45 H -0.015 1.015 46 H 0.261 0.739 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 12.571 11.461 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.029 4.029 3 C -0.049 4.049 4 C -0.084 4.084 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.117 4.117 8 C 0.045 3.955 9 N -0.352 5.352 10 C -0.018 4.018 11 C -0.148 4.148 12 C -0.044 4.044 13 C -0.129 4.129 14 C -0.172 4.172 15 C -0.079 4.079 16 N -0.229 5.229 17 C 0.088 3.912 18 C -0.567 4.567 19 H 0.074 0.926 20 C -0.192 4.192 21 N -0.559 5.559 22 Si 0.786 3.214 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.191 1.191 26 C 0.289 3.711 27 O -0.440 6.440 28 C -0.065 4.065 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.069 0.931 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.932 12.360 11.028 17.594 hybrid contribution 1.394 -0.651 -1.984 2.510 sum -4.538 11.708 9.045 15.475 Atomic orbital electron populations 1.81247 1.12854 1.10551 1.08792 1.25667 0.92425 0.92293 0.92551 1.15963 0.83685 1.08243 0.96998 1.21328 0.93838 0.95720 0.97561 1.21174 0.94241 0.99376 0.99233 1.21407 0.99966 0.94255 0.93467 1.20272 0.93910 1.01617 0.95936 1.20408 1.00391 0.86887 0.87839 1.48571 1.22074 1.28924 1.35610 1.22498 0.94176 0.94613 0.90534 1.22587 0.91900 0.96240 1.04043 1.22394 0.99446 0.87695 0.94884 1.22542 0.92525 1.02042 0.95796 1.22814 0.98300 0.96546 0.99560 1.22745 0.88505 0.98953 0.97690 1.63791 1.21369 1.25282 1.12491 1.19481 0.93341 0.95592 0.82777 1.21463 1.48524 0.94479 0.92269 0.92576 1.25812 0.95102 1.01186 0.97143 1.70121 1.49973 1.32980 1.02859 0.85516 0.78518 0.79910 0.77457 1.19903 1.20851 1.19119 1.21638 0.81699 0.83707 0.84095 1.90660 1.37822 1.73577 1.41922 1.21210 0.92670 0.95634 0.97007 0.83568 0.85116 0.87934 0.90480 0.84584 0.86842 0.89036 0.92268 0.85679 0.89471 0.86767 0.87933 0.93697 0.90380 0.96161 0.99637 0.99733 0.93062 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.30 18.54 19.00 0.35 -12.95 16 2 C 0.29 7.23 15.33 88.33 1.35 8.59 16 3 C -0.05 -1.09 5.73 -21.36 -0.12 -1.22 16 4 C -0.06 -1.65 9.76 22.54 0.22 -1.43 16 5 C -0.12 -3.70 10.03 22.23 0.22 -3.48 16 6 C -0.07 -2.32 9.69 22.33 0.22 -2.10 16 7 C -0.12 -2.98 5.46 -19.90 -0.11 -3.09 16 8 C 0.17 3.67 6.07 85.63 0.52 4.18 16 9 N -0.62 -16.51 2.93 -822.21 -2.41 -18.92 16 10 C 0.10 1.90 7.37 86.94 0.64 2.54 16 11 C -0.11 -2.71 6.47 31.44 0.20 -2.51 16 12 C 0.05 1.64 0.68 3.18 0.00 1.64 16 13 C -0.09 -2.25 5.97 31.69 0.19 -2.06 16 14 C -0.13 -4.03 6.85 31.87 0.22 -3.82 16 15 C 0.05 1.96 6.41 86.62 0.56 2.52 16 16 N -0.51 -22.00 4.84 -848.77 -4.11 -26.11 16 17 C 0.21 11.87 3.33 85.56 0.29 12.15 16 18 C -0.53 -31.23 8.63 25.60 0.22 -31.01 16 19 H 0.06 3.26 7.77 -2.91 -0.02 3.24 16 20 C 0.01 0.38 5.46 84.65 0.46 0.84 16 21 N -0.92 -56.25 13.29 21.45 0.28 -55.96 16 22 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C 0.50 18.61 5.36 87.51 0.47 19.08 16 27 O -0.56 -26.61 15.30 -3.03 -0.05 -26.66 16 28 C -0.04 -0.95 9.41 22.54 0.21 -0.74 16 29 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.10 3.91 8.06 -2.91 -0.02 3.88 16 32 H 0.08 1.93 7.87 -2.39 -0.02 1.91 16 33 H 0.14 1.63 8.08 -2.39 -0.02 1.61 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 37 H 0.13 2.10 7.63 -2.39 -0.02 2.09 16 38 H 0.09 1.83 8.00 -2.39 -0.02 1.82 16 39 H 0.11 2.12 7.78 -2.39 -0.02 2.10 16 40 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 43 H 0.02 0.96 7.30 -2.39 -0.02 0.94 16 44 H -0.01 -0.88 7.73 -2.39 -0.02 -0.90 16 45 H -0.02 -0.95 5.80 -2.39 -0.01 -0.96 16 46 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -81.14 391.08 2.84 -78.31 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.97 Total: 14.45 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 5.76 Total: 0.09 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -5.88 Total: -113.94 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -81.14 2.84 -78.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.636 kcal (2) G-P(sol) polarization free energy of solvation -81.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds