Wall clock time and date at job start Tue Mar 31 2020 22:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14789 * 340.59668 * 3 2 1 5 5 C 1.37924 * 119.84217 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.15348 * 359.73282 * 5 4 3 7 7 C 1.38338 * 120.30377 * 0.54269 * 6 5 4 8 8 C 1.50703 * 119.92421 * 179.72874 * 7 6 5 9 9 N 1.46497 * 109.46626 * 269.72824 * 8 7 6 10 10 C 1.46957 * 124.35899 * 269.97229 * 9 8 7 11 11 C 1.54713 * 105.48843 * 196.76751 * 10 9 8 12 12 C 1.53582 * 101.54411 * 335.54838 * 11 10 9 13 13 C 1.53318 * 111.07174 * 262.63551 * 12 11 10 14 14 C 1.54502 * 104.75812 * 216.60816 * 13 12 11 15 15 C 1.54456 * 105.04230 * 359.25577 * 14 13 12 16 16 N 1.47406 * 111.07391 * 144.98809 * 12 11 10 17 17 C 1.46901 * 110.99730 * 278.32365 * 16 12 11 18 18 C 1.50703 * 109.46672 * 169.99690 * 17 16 12 19 19 H 1.07996 * 120.00463 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99326 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00743 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99596 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46985 * 90.00216 * 22 20 18 24 24 H 1.48490 * 109.47179 * 210.00215 * 22 20 18 25 25 H 1.48494 * 109.46835 * 330.00199 * 22 20 18 26 26 C 1.34767 * 124.37597 * 89.97733 * 9 8 7 27 27 O 1.21276 * 125.13502 * 358.96741 * 26 9 8 28 28 C 1.37965 * 120.15048 * 359.45565 * 7 6 5 29 29 H 1.08001 * 120.07931 * 0.04831 * 4 3 2 30 30 H 1.08004 * 119.92351 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.84389 * 180.27379 * 6 5 4 32 32 H 1.08994 * 109.46957 * 149.73190 * 8 7 6 33 33 H 1.09002 * 109.46807 * 29.72271 * 8 7 6 34 34 H 1.08992 * 110.22575 * 77.77762 * 10 9 8 35 35 H 1.09001 * 110.27566 * 315.78099 * 10 9 8 36 36 H 1.09002 * 111.01759 * 217.47165 * 11 10 9 37 37 H 1.09000 * 111.01860 * 93.62683 * 11 10 9 38 38 H 1.09003 * 110.38310 * 335.42812 * 13 12 11 39 39 H 1.09002 * 110.38012 * 97.78943 * 13 12 11 40 40 H 1.08996 * 110.32458 * 118.14896 * 14 13 12 41 41 H 1.09001 * 110.32447 * 240.36362 * 14 13 12 42 42 H 1.08998 * 110.37532 * 142.37835 * 15 14 13 43 43 H 1.09006 * 110.37886 * 264.61642 * 15 14 13 44 44 H 1.08994 * 109.47208 * 290.00202 * 17 16 12 45 45 H 1.09003 * 109.46838 * 50.00491 * 17 16 12 46 46 H 0.96998 * 120.00285 * 179.97438 * 21 20 18 47 47 H 1.08000 * 120.07984 * 180.29421 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.1381 0.4012 5 6 4.6491 -1.1304 0.3993 6 6 5.3374 0.0004 -0.0043 7 6 4.6484 1.1337 -0.3975 8 6 5.4066 2.3624 -0.8295 9 7 5.6514 3.2190 0.3335 10 6 4.7419 4.2798 0.7884 11 6 5.5835 5.1676 1.7355 12 6 6.6661 4.1820 2.1994 13 6 6.3102 3.5727 3.5605 14 6 7.6615 3.4396 4.2977 15 6 8.7161 3.9663 3.2997 16 7 7.9591 4.8645 2.3869 17 6 8.6601 5.0253 1.1059 18 6 9.8478 5.9337 1.2939 19 1 10.0608 6.3497 2.2675 20 6 10.6623 6.2338 0.2227 21 7 10.4027 5.7278 -0.9631 22 14 12.1350 7.3593 0.4558 23 1 13.3258 6.5483 0.8156 24 1 12.4002 8.0952 -0.8064 25 1 11.8495 8.3291 1.5435 26 6 6.7397 3.1359 1.1240 27 8 7.6418 2.3368 0.9881 28 6 3.2688 1.1398 -0.4005 29 1 2.7340 -2.0228 0.7119 30 1 5.1933 -2.0104 0.7089 31 1 6.4174 -0.0006 -0.0080 32 1 4.8205 2.9102 -1.5673 33 1 6.3588 2.0658 -1.2692 34 1 3.8985 3.8478 1.3269 35 1 4.3883 4.8642 -0.0611 36 1 4.9861 5.5169 2.5776 37 1 6.0237 6.0066 1.1965 38 1 5.6417 4.2355 4.1101 39 1 5.8511 2.5928 3.4294 40 1 7.6603 4.0466 5.2030 41 1 7.8587 2.3956 4.5411 42 1 9.4905 4.5248 3.8255 43 1 9.1573 3.1400 2.7423 44 1 8.9996 4.0516 0.7528 45 1 7.9816 5.4614 0.3727 46 1 10.9756 5.9392 -1.7167 47 1 2.7320 2.0236 -0.7122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274031757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:17 Heat of formation + Delta-G solvation = 37.730450 kcal Electronic energy + Delta-G solvation = -29771.896384 eV Core-core repulsion = 25919.764728 eV Total energy + Delta-G solvation = -3852.131656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98059 -39.73587 -37.20241 -36.63532 -36.05130 -33.36022 -32.98150 -31.57747 -31.02813 -30.38397 -27.52930 -26.43528 -26.34213 -24.16760 -23.50203 -22.30990 -22.23982 -20.77536 -20.32448 -18.71403 -18.36529 -16.62677 -16.41282 -16.27358 -15.95850 -15.58401 -15.44071 -14.75785 -14.56826 -14.47198 -14.29178 -13.98294 -13.77653 -13.56333 -13.45543 -13.34479 -13.11232 -12.66566 -12.49412 -12.32186 -12.19846 -12.07625 -11.87361 -11.73602 -11.64767 -11.44539 -11.36185 -10.95294 -10.77110 -10.62906 -10.57635 -10.31566 -10.16441 -9.80923 -9.68793 -9.28202 -9.19233 -9.11418 -8.55417 -8.39517 -7.36204 -5.99824 -4.00857 0.49648 0.95277 2.36894 2.62902 2.97681 3.22506 3.33211 3.39059 3.43173 3.56919 3.68272 4.41533 4.46455 4.48664 4.57019 4.73572 4.79104 4.87535 4.97322 5.02276 5.13094 5.18177 5.25773 5.35248 5.35515 5.46703 5.50983 5.55926 5.58133 5.68504 5.71936 5.90887 5.92928 6.05152 6.06000 6.12739 6.20896 6.24652 6.31163 6.41264 6.50686 6.64919 6.73905 6.75739 7.09909 7.18255 7.30964 7.44364 7.75402 7.94976 8.15692 8.44268 8.62088 9.06216 9.62400 11.10994 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003005 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.228923 B = 9315.672767 C = 9685.851477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.259 3.741 3 C -0.038 4.038 4 C -0.070 4.070 5 C -0.121 4.121 6 C -0.064 4.064 7 C -0.103 4.103 8 C 0.164 3.836 9 N -0.621 5.621 10 C 0.104 3.896 11 C -0.114 4.114 12 C 0.056 3.944 13 C -0.097 4.097 14 C -0.124 4.124 15 C 0.041 3.959 16 N -0.476 5.476 17 C 0.173 3.827 18 C -0.504 4.504 19 H 0.062 0.938 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.517 3.483 27 O -0.513 6.513 28 C -0.056 4.056 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.024 0.976 46 H 0.260 0.740 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 -10.153 3.448 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.057 4.057 3 C -0.041 4.041 4 C -0.091 4.091 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.104 4.104 8 C 0.041 3.959 9 N -0.356 5.356 10 C -0.019 4.019 11 C -0.152 4.152 12 C -0.039 4.039 13 C -0.136 4.136 14 C -0.162 4.162 15 C -0.087 4.087 16 N -0.199 5.199 17 C 0.048 3.952 18 C -0.543 4.543 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C 0.303 3.697 27 O -0.387 6.387 28 C -0.077 4.077 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.482 -10.050 3.337 18.757 hybrid contribution 1.323 -0.179 -0.550 1.444 sum -14.159 -10.229 2.787 17.688 Atomic orbital electron populations 1.81257 1.12080 1.07542 1.08951 1.25741 0.92666 0.93700 0.93564 1.15943 0.84162 0.96568 1.07458 1.21178 0.94424 0.96576 0.96874 1.21136 0.93506 0.98975 1.00319 1.21548 1.01323 0.91846 0.93590 1.20300 0.93184 0.96459 1.00463 1.20227 1.00662 0.87714 0.87254 1.48459 1.22389 1.35497 1.29274 1.22171 0.92678 0.88574 0.98493 1.22534 0.95531 0.97872 0.99266 1.22116 0.95700 0.92313 0.93734 1.22071 0.98168 0.99971 0.93382 1.22387 0.94634 1.00454 0.98732 1.23032 0.95964 0.95564 0.94143 1.65588 1.00604 1.38235 1.15521 1.20072 0.93459 0.97271 0.84390 1.21074 1.09489 1.28172 0.95570 0.91988 1.24971 0.97981 0.96450 0.95160 1.69967 1.38842 1.44749 1.00068 0.86517 0.82821 0.80747 0.77454 1.20748 1.21323 1.19796 1.21483 0.80597 0.84357 0.83257 1.90670 1.35207 1.39962 1.72835 1.21063 0.93555 0.96542 0.96565 0.85138 0.84826 0.84559 0.89355 0.88635 0.91648 0.90611 0.89346 0.88784 0.90449 0.92064 0.91453 0.92043 0.90454 0.92890 0.96482 0.95785 0.93028 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.22 18.54 41.84 0.78 -4.44 16 2 C 0.26 2.62 15.33 -22.47 -0.34 2.28 16 3 C -0.04 -0.33 5.73 -106.93 -0.61 -0.94 16 4 C -0.07 -0.53 9.76 -39.17 -0.38 -0.92 16 5 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 6 C -0.06 -0.65 9.69 -39.49 -0.38 -1.03 16 7 C -0.10 -1.03 5.46 -104.68 -0.57 -1.60 16 8 C 0.16 1.91 6.06 -5.19 -0.03 1.88 16 9 N -0.62 -8.76 2.93 -173.85 -0.51 -9.27 16 10 C 0.10 1.18 7.37 -2.89 -0.02 1.16 16 11 C -0.11 -1.58 6.28 -25.53 -0.16 -1.74 16 12 C 0.06 0.95 0.56 -132.25 -0.07 0.87 16 13 C -0.10 -1.38 6.17 -25.78 -0.16 -1.54 16 14 C -0.12 -1.86 7.01 -25.18 -0.18 -2.04 16 15 C 0.04 0.81 5.79 -2.03 -0.01 0.80 16 16 N -0.48 -10.06 5.01 -218.56 -1.10 -11.16 16 17 C 0.17 4.50 3.56 -4.97 -0.02 4.48 16 18 C -0.50 -14.24 8.98 -34.44 -0.31 -14.55 16 19 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.52 9.34 5.48 -11.23 -0.06 9.28 16 27 O -0.51 -11.05 14.80 5.56 0.08 -10.97 16 28 C -0.06 -0.49 9.41 -39.17 -0.37 -0.85 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.10 1.29 7.89 -51.93 -0.41 0.88 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.99 7.45 -51.93 -0.39 0.60 16 37 H 0.09 1.52 7.39 -51.93 -0.38 1.14 16 38 H 0.08 0.92 7.45 -51.93 -0.39 0.54 16 39 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.05 1.17 6.80 -51.93 -0.35 0.82 16 44 H 0.02 0.51 5.91 -51.93 -0.31 0.20 16 45 H 0.02 0.67 7.28 -51.93 -0.38 0.29 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -33.96 388.73 -10.14 -44.10 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.78 Total: -0.44 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.18 Total: -4.34 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.09 Total: -50.93 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.96 -10.14 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.831 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds