Wall clock time and date at job start Tue Mar 31 2020 22:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39655 * 120.14789 * 340.59668 * 3 2 1 5 5 C 1.37924 * 119.84217 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.15348 * 359.73282 * 5 4 3 7 7 C 1.38338 * 120.30377 * 0.54269 * 6 5 4 8 8 C 1.50703 * 119.92421 * 179.72874 * 7 6 5 9 9 N 1.46497 * 109.46626 * 269.72824 * 8 7 6 10 10 C 1.46957 * 124.35899 * 269.97229 * 9 8 7 11 11 C 1.54713 * 105.48843 * 196.76751 * 10 9 8 12 12 C 1.53582 * 101.54411 * 335.54838 * 11 10 9 13 13 C 1.53318 * 111.07174 * 262.63551 * 12 11 10 14 14 C 1.54502 * 104.75812 * 216.60816 * 13 12 11 15 15 C 1.54456 * 105.04230 * 359.25577 * 14 13 12 16 16 N 1.47406 * 111.07391 * 144.98809 * 12 11 10 17 17 C 1.46901 * 110.99730 * 278.32365 * 16 12 11 18 18 C 1.50703 * 109.46672 * 169.99690 * 17 16 12 19 19 H 1.07996 * 120.00463 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99326 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00743 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99596 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46985 * 90.00216 * 22 20 18 24 24 H 1.48490 * 109.47179 * 210.00215 * 22 20 18 25 25 H 1.48494 * 109.46835 * 330.00199 * 22 20 18 26 26 C 1.34767 * 124.37597 * 89.97733 * 9 8 7 27 27 O 1.21276 * 125.13502 * 358.96741 * 26 9 8 28 28 C 1.37965 * 120.15048 * 359.45565 * 7 6 5 29 29 H 1.08001 * 120.07931 * 0.04831 * 4 3 2 30 30 H 1.08004 * 119.92351 * 180.02562 * 5 4 3 31 31 H 1.08003 * 119.84389 * 180.27379 * 6 5 4 32 32 H 1.08994 * 109.46957 * 149.73190 * 8 7 6 33 33 H 1.09002 * 109.46807 * 29.72271 * 8 7 6 34 34 H 1.08992 * 110.22575 * 77.77762 * 10 9 8 35 35 H 1.09001 * 110.27566 * 315.78099 * 10 9 8 36 36 H 1.09002 * 111.01759 * 217.47165 * 11 10 9 37 37 H 1.09000 * 111.01860 * 93.62683 * 11 10 9 38 38 H 1.09003 * 110.38310 * 335.42812 * 13 12 11 39 39 H 1.09002 * 110.38012 * 97.78943 * 13 12 11 40 40 H 1.08996 * 110.32458 * 118.14896 * 14 13 12 41 41 H 1.09001 * 110.32447 * 240.36362 * 14 13 12 42 42 H 1.08998 * 110.37532 * 142.37835 * 15 14 13 43 43 H 1.09006 * 110.37886 * 264.61642 * 15 14 13 44 44 H 1.08994 * 109.47208 * 290.00202 * 17 16 12 45 45 H 1.09003 * 109.46838 * 50.00491 * 17 16 12 46 46 H 0.96998 * 120.00285 * 179.97438 * 21 20 18 47 47 H 1.08000 * 120.07984 * 180.29421 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.1381 0.4012 5 6 4.6491 -1.1304 0.3993 6 6 5.3374 0.0004 -0.0043 7 6 4.6484 1.1337 -0.3975 8 6 5.4066 2.3624 -0.8295 9 7 5.6514 3.2190 0.3335 10 6 4.7419 4.2798 0.7884 11 6 5.5835 5.1676 1.7355 12 6 6.6661 4.1820 2.1994 13 6 6.3102 3.5727 3.5605 14 6 7.6615 3.4396 4.2977 15 6 8.7161 3.9663 3.2997 16 7 7.9591 4.8645 2.3869 17 6 8.6601 5.0253 1.1059 18 6 9.8478 5.9337 1.2939 19 1 10.0608 6.3497 2.2675 20 6 10.6623 6.2338 0.2227 21 7 10.4027 5.7278 -0.9631 22 14 12.1350 7.3593 0.4558 23 1 13.3258 6.5483 0.8156 24 1 12.4002 8.0952 -0.8064 25 1 11.8495 8.3291 1.5435 26 6 6.7397 3.1359 1.1240 27 8 7.6418 2.3368 0.9881 28 6 3.2688 1.1398 -0.4005 29 1 2.7340 -2.0228 0.7119 30 1 5.1933 -2.0104 0.7089 31 1 6.4174 -0.0006 -0.0080 32 1 4.8205 2.9102 -1.5673 33 1 6.3588 2.0658 -1.2692 34 1 3.8985 3.8478 1.3269 35 1 4.3883 4.8642 -0.0611 36 1 4.9861 5.5169 2.5776 37 1 6.0237 6.0066 1.1965 38 1 5.6417 4.2355 4.1101 39 1 5.8511 2.5928 3.4294 40 1 7.6603 4.0466 5.2030 41 1 7.8587 2.3956 4.5411 42 1 9.4905 4.5248 3.8255 43 1 9.1573 3.1400 2.7423 44 1 8.9996 4.0516 0.7528 45 1 7.9816 5.4614 0.3727 46 1 10.9756 5.9392 -1.7167 47 1 2.7320 2.0236 -0.7122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:16 Heat of formation + Delta-G solvation = 16.184483 kcal Electronic energy + Delta-G solvation = -29772.830688 eV Core-core repulsion = 25919.764728 eV Total energy + Delta-G solvation = -3853.065960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26221 -40.52376 -38.50853 -37.62236 -37.28882 -35.21254 -34.12639 -32.76111 -32.29684 -31.41263 -28.76469 -28.33869 -27.40084 -24.98487 -24.86203 -24.00421 -23.05851 -21.97697 -21.73983 -19.89115 -19.34014 -18.47330 -17.61026 -17.33819 -17.07918 -16.75838 -16.56420 -16.30685 -15.97862 -15.54560 -15.36618 -15.18230 -15.07193 -14.74821 -14.47777 -14.21456 -14.11550 -13.97148 -13.76767 -13.74447 -13.42705 -13.31724 -13.15005 -12.96554 -12.81194 -12.74480 -12.49209 -12.43742 -12.21312 -12.11975 -11.99781 -11.86116 -11.76241 -11.44414 -11.30311 -10.94081 -10.61230 -9.97258 -9.94635 -9.65258 -9.07184 -8.20752 -6.31120 -0.23565 0.26658 1.38458 1.40337 1.51932 1.57968 1.63354 1.83032 2.23799 2.38976 2.80178 2.91974 3.10944 3.18295 3.56718 3.65080 3.71160 3.76143 3.88782 3.99916 4.07662 4.18750 4.25108 4.31231 4.31917 4.39961 4.51838 4.66601 4.70680 4.73893 4.76132 4.83114 4.92317 4.97828 4.99075 5.10870 5.12830 5.16948 5.23377 5.25679 5.31274 5.34603 5.42494 5.52548 5.62636 5.66854 5.80187 6.00678 6.12899 6.19008 6.41858 6.48933 6.84535 7.26747 7.37991 8.90317 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.003005 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.228923 B = 9315.672767 C = 9685.851477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.283 3.717 3 C -0.040 4.040 4 C -0.057 4.057 5 C -0.118 4.118 6 C -0.079 4.079 7 C -0.110 4.110 8 C 0.160 3.840 9 N -0.617 5.617 10 C 0.104 3.896 11 C -0.111 4.111 12 C 0.042 3.958 13 C -0.089 4.089 14 C -0.114 4.114 15 C 0.037 3.963 16 N -0.482 5.482 17 C 0.203 3.797 18 C -0.524 4.524 19 H 0.061 0.939 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.502 3.498 27 O -0.565 6.565 28 C -0.045 4.045 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.015 0.985 44 H -0.027 1.027 45 H -0.003 1.003 46 H 0.263 0.737 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.719 -9.863 5.029 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.032 4.032 3 C -0.044 4.044 4 C -0.077 4.077 5 C -0.136 4.136 6 C -0.099 4.099 7 C -0.111 4.111 8 C 0.039 3.961 9 N -0.351 5.351 10 C -0.018 4.018 11 C -0.149 4.149 12 C -0.052 4.052 13 C -0.127 4.127 14 C -0.152 4.152 15 C -0.091 4.091 16 N -0.205 5.205 17 C 0.076 3.924 18 C -0.563 4.563 19 H 0.079 0.921 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.202 1.202 24 H -0.205 1.205 25 H -0.185 1.185 26 C 0.289 3.711 27 O -0.443 6.443 28 C -0.065 4.065 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.033 0.967 44 H -0.009 1.009 45 H 0.015 0.985 46 H 0.072 0.928 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.025 -9.748 4.920 21.075 hybrid contribution 2.098 -0.337 -1.084 2.386 sum -15.927 -10.085 3.836 19.238 Atomic orbital electron populations 1.81295 1.13221 1.08832 1.10440 1.25761 0.92548 0.92510 0.92341 1.15957 0.83406 0.97016 1.07974 1.21439 0.94049 0.97024 0.95195 1.21293 0.93885 0.98750 0.99655 1.21511 1.00368 0.93212 0.94766 1.20025 0.93706 0.95519 1.01841 1.20327 0.99925 0.88829 0.87029 1.48588 1.21732 1.35893 1.28856 1.22451 0.92399 0.87696 0.99228 1.22591 0.95049 0.96524 1.00764 1.22437 0.94223 0.93006 0.95549 1.22134 0.98047 1.01136 0.91413 1.22353 0.93381 1.01292 0.98156 1.23018 0.97390 0.94057 0.94620 1.65471 1.02106 1.39946 1.12993 1.19485 0.92624 0.94124 0.86143 1.21442 1.10622 1.28582 0.95614 0.92119 1.25936 1.01123 0.97988 0.94709 1.70112 1.40197 1.46100 1.00994 0.85384 0.78686 0.78691 0.77877 1.20169 1.20520 1.18526 1.21739 0.80946 0.84207 0.84189 1.90636 1.37262 1.42058 1.74314 1.21131 0.92572 0.97302 0.95542 0.82628 0.82925 0.87151 0.86450 0.91885 0.87833 0.88492 0.85624 0.91894 0.86952 0.90993 0.88928 0.90991 0.91488 0.96677 1.00934 0.98494 0.92837 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.44 18.54 19.00 0.35 -10.08 16 2 C 0.28 4.96 15.33 88.33 1.35 6.32 16 3 C -0.04 -0.58 5.73 -21.36 -0.12 -0.70 16 4 C -0.06 -0.70 9.76 22.54 0.22 -0.48 16 5 C -0.12 -1.71 10.03 22.23 0.22 -1.49 16 6 C -0.08 -1.62 9.69 22.33 0.22 -1.41 16 7 C -0.11 -2.11 5.46 -19.90 -0.11 -2.22 16 8 C 0.16 3.80 6.06 85.63 0.52 4.32 16 9 N -0.62 -17.34 2.93 -822.33 -2.41 -19.75 16 10 C 0.10 2.09 7.37 86.88 0.64 2.73 16 11 C -0.11 -2.89 6.28 31.37 0.20 -2.69 16 12 C 0.04 1.41 0.56 2.83 0.00 1.41 16 13 C -0.09 -2.29 6.17 31.21 0.19 -2.10 16 14 C -0.11 -3.27 7.01 31.60 0.22 -3.05 16 15 C 0.04 1.54 5.79 86.44 0.50 2.04 16 16 N -0.48 -21.12 5.01 -845.41 -4.24 -25.36 16 17 C 0.20 11.25 3.56 85.56 0.30 11.55 16 18 C -0.52 -30.93 8.98 25.60 0.23 -30.70 16 19 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 20 C 0.00 0.02 5.46 84.65 0.46 0.48 16 21 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 22 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.50 18.90 5.48 87.50 0.48 19.38 16 27 O -0.56 -26.47 14.80 -3.02 -0.04 -26.51 16 28 C -0.04 -0.65 9.41 22.54 0.21 -0.44 16 29 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.12 2.02 8.08 -2.39 -0.02 2.00 16 33 H 0.06 1.89 7.89 -2.39 -0.02 1.87 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.13 2.29 7.45 -2.39 -0.02 2.27 16 37 H 0.06 2.04 7.39 -2.39 -0.02 2.02 16 38 H 0.11 2.13 7.45 -2.39 -0.02 2.11 16 39 H 0.07 1.73 7.85 -2.39 -0.02 1.71 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.01 0.72 6.80 -2.38 -0.02 0.70 16 44 H -0.03 -1.73 5.91 -2.39 -0.01 -1.74 16 45 H 0.00 -0.18 7.28 -2.39 -0.02 -0.19 16 46 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 47 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -81.03 388.73 2.69 -78.34 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.98 Total: 10.78 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.74 Total: 2.96 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -6.01 Total: -113.12 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -81.03 2.69 -78.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.521 kcal (2) G-P(sol) polarization free energy of solvation -81.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds