Wall clock time and date at job start Tue Mar 31 2020 22:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.43203 * 179.97438 * 2 1
4 4 C 1.39723 * 120.20914 * 341.80430 * 3 2 1
5 5 C 1.37794 * 119.91983 * 180.02562 * 4 3 2
6 6 C 1.38566 * 120.34795 * 359.97438 * 5 4 3
7 7 C 1.38017 * 120.41994 * 359.72106 * 6 5 4
8 8 C 1.38883 * 120.07017 * 0.55991 * 7 6 5
9 9 N 1.39028 * 120.17258 * 179.71992 * 8 7 6
10 10 C 1.48768 * 111.00256 * 31.15106 * 9 8 7
11 11 C 1.54456 * 104.76581 * 202.30931 * 10 9 8
12 12 C 1.54493 * 105.04844 * 23.55013 * 11 10 9
13 13 C 1.47401 * 110.99928 * 275.79223 * 9 8 7
14 14 C 1.53587 * 111.07304 * 278.33546 * 13 9 8
15 15 C 1.54714 * 101.50841 * 145.00113 * 14 13 9
16 16 N 1.46885 * 105.51548 * 335.50113 * 15 14 13
17 17 C 1.46507 * 124.37238 * 196.77883 * 16 15 14
18 18 C 1.52999 * 109.47173 * 90.00060 * 17 16 15
19 19 C 1.50701 * 109.47063 * 180.02562 * 18 17 16
20 20 H 1.08002 * 119.99921 * 359.97438 * 19 18 17
21 21 C 1.37874 * 119.99868 * 180.28063 * 19 18 17
22 22 N 1.31522 * 120.00078 * 359.71608 * 21 19 18
23 23 Si 1.86793 * 120.00235 * 179.72465 * 21 19 18
24 24 H 1.48504 * 109.47171 * 359.97438 * 23 21 19
25 25 H 1.48500 * 109.47492 * 119.99348 * 23 21 19
26 26 H 1.48502 * 109.47270 * 239.99883 * 23 21 19
27 27 C 1.34754 * 111.25625 * 17.04942 * 16 15 14
28 28 O 1.21280 * 125.13880 * 178.71886 * 27 16 15
29 29 H 1.07998 * 120.04424 * 0.04022 * 4 3 2
30 30 H 1.08009 * 119.82848 * 180.02562 * 5 4 3
31 31 H 1.08008 * 119.79117 * 180.02562 * 6 5 4
32 32 H 1.07997 * 119.96678 * 180.28102 * 7 6 5
33 33 H 1.08998 * 110.37753 * 83.48460 * 10 9 8
34 34 H 1.09003 * 110.46816 * 321.17862 * 10 9 8
35 35 H 1.09003 * 110.32063 * 264.65801 * 11 10 9
36 36 H 1.08995 * 110.32613 * 142.44642 * 11 10 9
37 37 H 1.09000 * 110.37907 * 240.44316 * 12 11 10
38 38 H 1.08995 * 110.38287 * 118.08153 * 12 11 10
39 39 H 1.08994 * 111.01980 * 26.93908 * 14 13 9
40 40 H 1.09005 * 111.04800 * 263.06567 * 14 13 9
41 41 H 1.09004 * 110.23654 * 216.49225 * 15 14 13
42 42 H 1.08998 * 110.23944 * 94.51226 * 15 14 13
43 43 H 1.09006 * 109.46752 * 330.00285 * 17 16 15
44 44 H 1.09001 * 109.47272 * 210.00676 * 17 16 15
45 45 H 1.09001 * 109.46764 * 59.99771 * 18 17 16
46 46 H 1.08997 * 109.46823 * 300.00292 * 18 17 16
47 47 H 0.96995 * 119.99743 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2715 -1.1461 0.3771
5 6 4.6495 -1.1387 0.3754
6 6 5.3430 0.0009 0.0009
7 6 4.6624 1.1395 -0.3801
8 6 3.2737 1.1533 -0.3793
9 7 2.5860 2.3009 -0.7571
10 6 3.3526 3.0718 -1.7726
11 6 2.8066 4.5129 -1.6675
12 6 2.2230 4.6176 -0.2409
13 6 2.4505 3.2329 0.3768
14 6 1.2769 2.8329 1.2832
15 6 1.8188 3.2215 2.6793
16 7 3.2821 3.1915 2.5551
17 6 4.2078 3.1466 3.6898
18 6 4.4979 1.6892 4.0539
19 6 5.4496 1.6429 5.2214
20 1 5.8116 2.5613 5.6597
21 6 5.8630 0.4283 5.7261
22 7 5.4225 -0.6900 5.1922
23 14 7.0486 0.3710 7.1684
24 1 7.3916 1.7552 7.5826
25 1 6.4121 -0.3427 8.3045
26 1 8.2853 -0.3451 6.7645
27 6 3.6633 3.2167 1.2628
28 8 4.8120 3.2230 0.8739
29 1 2.7361 -2.0374 0.6692
30 1 5.1918 -2.0262 0.6667
31 1 6.4231 -0.0034 0.0025
32 1 5.2104 2.0222 -0.6750
33 1 3.1729 2.6696 -2.7696
34 1 4.4178 3.0517 -1.5422
35 1 2.0250 4.6766 -2.4094
36 1 3.6131 5.2339 -1.8006
37 1 1.1576 4.8444 -0.2823
38 1 2.7523 5.3799 0.3308
39 1 1.0838 1.7619 1.2229
40 1 0.3811 3.4039 1.0388
41 1 1.4889 2.4993 3.4262
42 1 1.4837 4.2231 2.9485
43 1 3.7591 3.6523 4.5449
44 1 5.1383 3.6458 3.4196
45 1 4.9464 1.1835 3.1987
46 1 3.5673 1.1900 4.3240
47 1 5.7137 -1.5444 5.5470
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001274818122.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:41:18
Heat of formation + Delta-G solvation = 35.432472 kcal
Electronic energy + Delta-G solvation = -31231.448917 eV
Core-core repulsion = 27379.217613 eV
Total energy + Delta-G solvation = -3852.231304 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.94088 -40.25192 -38.53394 -37.76790 -37.26091 -35.57933 -33.94110 -33.45342
-32.31642 -30.78793 -29.63707 -28.88594 -26.98136 -25.17061 -24.78950 -23.74989
-23.48718 -21.84276 -21.67400 -20.25080 -19.89698 -18.68214 -18.18070 -17.36215
-16.84216 -16.69413 -16.51253 -16.36862 -16.10886 -15.75971 -15.43174 -15.29530
-14.91699 -14.57179 -14.53341 -14.32767 -14.14579 -14.01471 -13.89813 -13.77031
-13.55696 -13.17879 -13.14641 -12.95882 -12.85376 -12.80217 -12.59096 -12.46525
-12.32473 -12.22726 -11.95324 -11.92872 -11.78062 -11.58647 -11.35468 -10.88157
-10.56790 -10.10715 -9.93003 -9.55985 -9.27173 -8.19428 -6.31444 -0.25402
0.28265 1.39938 1.40790 1.48167 1.53631 1.66177 1.97907 2.09664
2.42607 2.58170 2.82158 2.91250 3.13742 3.25924 3.39348 3.51800
3.83559 3.87249 4.01632 4.06846 4.13988 4.18009 4.29994 4.34908
4.40744 4.51503 4.51917 4.62292 4.64325 4.71568 4.82521 4.84027
4.87124 4.89807 4.94067 4.98369 5.10260 5.11204 5.27194 5.32252
5.34400 5.47911 5.49525 5.58053 5.60229 5.68528 5.85215 6.09573
6.18346 6.25543 6.47072 6.82504 7.16599 7.37624 8.91868
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.012156 B = 0.004567 C = 0.004085
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2302.766425 B = 6130.007696 C = 6852.979807
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.445 5.445
2 C 0.288 3.712
3 C -0.037 4.037
4 C -0.074 4.074
5 C -0.118 4.118
6 C -0.090 4.090
7 C -0.132 4.132
8 C 0.104 3.896
9 N -0.450 5.450
10 C 0.018 3.982
11 C -0.113 4.113
12 C -0.097 4.097
13 C 0.066 3.934
14 C -0.118 4.118
15 C 0.097 3.903
16 N -0.613 5.613
17 C 0.142 3.858
18 C 0.033 3.967
19 C -0.543 4.543
20 H 0.062 0.938
21 C 0.009 3.991
22 N -0.923 5.923
23 Si 0.961 3.039
24 H -0.262 1.262
25 H -0.278 1.278
26 H -0.280 1.280
27 C 0.494 3.506
28 O -0.551 6.551
29 H 0.150 0.850
30 H 0.148 0.852
31 H 0.136 0.864
32 H 0.149 0.851
33 H 0.101 0.899
34 H 0.060 0.940
35 H 0.097 0.903
36 H 0.082 0.918
37 H 0.110 0.890
38 H 0.075 0.925
39 H 0.065 0.935
40 H 0.125 0.875
41 H 0.070 0.930
42 H 0.106 0.894
43 H 0.084 0.916
44 H 0.058 0.942
45 H -0.018 1.018
46 H -0.010 1.010
47 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.317 7.910 -13.737 17.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.121 5.121
2 C -0.026 4.026
3 C -0.042 4.042
4 C -0.094 4.094
5 C -0.136 4.136
6 C -0.109 4.109
7 C -0.152 4.152
8 C 0.006 3.994
9 N -0.169 5.169
10 C -0.108 4.108
11 C -0.151 4.151
12 C -0.136 4.136
13 C -0.025 4.025
14 C -0.156 4.156
15 C -0.026 4.026
16 N -0.345 5.345
17 C 0.020 3.980
18 C -0.005 4.005
19 C -0.582 4.582
20 H 0.080 0.920
21 C -0.190 4.190
22 N -0.562 5.562
23 Si 0.786 3.214
24 H -0.186 1.186
25 H -0.203 1.203
26 H -0.206 1.206
27 C 0.281 3.719
28 O -0.429 6.429
29 H 0.167 0.833
30 H 0.165 0.835
31 H 0.153 0.847
32 H 0.166 0.834
33 H 0.119 0.881
34 H 0.079 0.921
35 H 0.116 0.884
36 H 0.101 0.899
37 H 0.129 0.871
38 H 0.093 0.907
39 H 0.083 0.917
40 H 0.143 0.857
41 H 0.088 0.912
42 H 0.124 0.876
43 H 0.103 0.897
44 H 0.077 0.923
45 H 0.001 0.999
46 H 0.008 0.992
47 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -7.979 7.588 -14.058 17.857
hybrid contribution 2.123 -0.592 1.405 2.614
sum -5.856 6.995 -12.653 15.599
Atomic orbital electron populations
1.81152 1.12118 1.08876 1.10002 1.25322 0.92349 0.92267 0.92656
1.16003 0.84409 0.95282 1.08519 1.21302 0.94676 0.96922 0.96544
1.21337 0.93851 0.99601 0.98818 1.21520 1.01229 0.92597 0.95588
1.22008 0.93751 0.99076 1.00347 1.18836 0.91008 0.91499 0.98021
1.62829 1.44095 1.02433 1.07590 1.23596 0.97288 0.94125 0.95801
1.22347 1.01532 0.94698 0.96525 1.22220 1.04076 0.91200 0.96058
1.22256 0.93467 0.96094 0.90710 1.22767 0.97779 1.02925 0.92120
1.22375 0.78482 1.03501 0.98255 1.48652 1.08154 1.71334 1.06405
1.21395 0.91624 0.98196 0.86745 1.19106 0.94862 0.91812 0.94744
1.21506 1.27865 0.92901 1.15902 0.91972 1.25860 0.98022 0.95296
0.99817 1.70111 1.45411 0.97922 1.42772 0.85459 0.78492 0.78587
0.78866 1.18609 1.20339 1.20577 1.21434 0.90628 0.75645 0.84221
1.90589 1.22626 1.51452 1.78274 0.83260 0.83464 0.84653 0.83354
0.88064 0.92144 0.88422 0.89941 0.87122 0.90670 0.91663 0.85686
0.91159 0.87591 0.89749 0.92332 0.99917 0.99183 0.92807
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.45 -14.58 18.27 19.00 0.35 -14.23 16
2 C 0.29 9.08 12.12 88.33 1.07 10.15 16
3 C -0.04 -1.18 5.53 -21.15 -0.12 -1.30 16
4 C -0.07 -2.20 9.75 22.52 0.22 -1.98 16
5 C -0.12 -3.56 10.02 22.24 0.22 -3.34 16
6 C -0.09 -2.86 10.03 22.30 0.22 -2.64 16
7 C -0.13 -4.29 6.56 22.37 0.15 -4.14 16
8 C 0.10 3.25 4.15 38.67 0.16 3.41 16
9 N -0.45 -12.12 4.50 -642.22 -2.89 -15.01 16
10 C 0.02 0.39 5.90 86.44 0.51 0.90 16
11 C -0.11 -1.90 7.01 31.60 0.22 -1.68 16
12 C -0.10 -1.84 6.17 31.21 0.19 -1.65 16
13 C 0.07 1.74 0.57 2.84 0.00 1.74 16
14 C -0.12 -2.97 6.36 31.38 0.20 -2.77 16
15 C 0.10 2.62 7.37 86.89 0.64 3.26 16
16 N -0.61 -21.71 2.95 -818.13 -2.41 -24.12 16
17 C 0.14 5.92 5.89 86.38 0.51 6.43 16
18 C 0.03 1.73 5.30 29.85 0.16 1.88 16
19 C -0.54 -30.34 9.11 25.60 0.23 -30.11 16
20 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16
21 C 0.01 0.51 5.46 84.65 0.46 0.97 16
22 N -0.92 -54.69 13.29 21.45 0.28 -54.40 16
23 Si 0.96 43.47 29.54 68.60 2.03 45.49 16
24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16
25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16
26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
27 C 0.49 17.14 5.39 87.51 0.47 17.61 16
28 O -0.55 -21.99 12.86 -3.03 -0.04 -22.03 16
29 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16
30 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16
31 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16
32 H 0.15 4.89 4.27 -2.91 -0.01 4.88 16
33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16
34 H 0.06 1.54 4.81 -2.39 -0.01 1.53 16
35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16
36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
37 H 0.11 1.53 7.46 -2.39 -0.02 1.52 16
38 H 0.07 1.46 7.84 -2.39 -0.02 1.44 16
39 H 0.06 1.96 4.24 -2.39 -0.01 1.95 16
40 H 0.12 2.32 7.45 -2.38 -0.02 2.30 16
41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16
42 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16
43 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16
44 H 0.06 2.56 7.93 -2.39 -0.02 2.55 16
45 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16
46 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16
47 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16
Total: -1.00 -70.43 374.76 3.84 -66.59
By element:
Atomic # 1 Polarization: 19.97 SS G_CDS: 0.99 Total: 20.96 kcal
Atomic # 6 Polarization: -8.77 SS G_CDS: 5.53 Total: -3.25 kcal
Atomic # 7 Polarization: -103.10 SS G_CDS: -4.67 Total: -107.77 kcal
Atomic # 8 Polarization: -21.99 SS G_CDS: -0.04 Total: -22.03 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -70.43 3.84 -66.59 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274818122.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.020 kcal
(2) G-P(sol) polarization free energy of solvation -70.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.594 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds