Wall clock time and date at job start Tue Mar 31 2020 22:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86790 * 120.00620 * 2 1 4 4 H 1.48502 * 109.47546 * 240.00325 * 3 2 1 5 5 H 1.48502 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47467 * 120.00073 * 3 2 1 7 7 C 1.38820 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99921 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99954 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47059 * 179.97438 * 10 9 7 12 12 H 1.09005 * 112.84772 * 316.19920 * 11 10 9 13 13 C 1.53776 * 113.61240 * 87.50377 * 11 10 9 14 14 C 1.53784 * 87.08265 * 139.98067 * 13 11 10 15 15 H 1.08999 * 113.68866 * 220.00529 * 14 13 11 16 16 N 1.46501 * 113.61498 * 89.11319 * 14 13 11 17 17 C 1.34774 * 120.00008 * 107.50174 * 16 14 13 18 18 O 1.21584 * 119.99799 * 0.02562 * 17 16 14 19 19 C 1.47571 * 120.00389 * 180.02562 * 17 16 14 20 20 C 1.39663 * 120.18872 * 353.84801 * 19 17 16 21 21 C 1.37832 * 119.91652 * 180.29667 * 20 19 17 22 22 C 1.38538 * 120.30612 * 359.42927 * 21 20 19 23 23 C 1.38060 * 120.39568 * 0.59519 * 22 21 20 24 24 C 1.38767 * 120.07345 * 359.68613 * 23 22 21 25 25 N 1.39672 * 120.15395 * 180.02562 * 24 23 22 26 26 C 1.36652 * 125.67758 * 119.86683 * 25 24 23 27 27 C 1.34802 * 108.19247 * 179.82728 * 26 25 24 28 28 C 1.40995 * 107.48807 * 0.43058 * 27 26 25 29 29 C 1.34812 * 107.48064 * 359.72921 * 28 27 26 30 30 C 1.53778 * 113.61433 * 185.00078 * 11 10 9 31 31 H 0.97004 * 119.99571 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99886 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.46800 * 59.99913 * 10 9 7 34 34 H 1.08994 * 109.46840 * 299.99885 * 10 9 7 35 35 H 1.09000 * 113.62054 * 25.42830 * 13 11 10 36 36 H 1.09006 * 113.61536 * 254.52572 * 13 11 10 37 37 H 0.96998 * 119.99854 * 287.51070 * 16 14 13 38 38 H 1.08000 * 120.04297 * 0.02877 * 20 19 17 39 39 H 1.08001 * 119.84521 * 179.72426 * 21 20 19 40 40 H 1.08007 * 119.79895 * 180.30359 * 22 21 20 41 41 H 1.07998 * 119.96677 * 179.70252 * 23 22 21 42 42 H 1.08005 * 125.90487 * 0.02562 * 26 25 24 43 43 H 1.07998 * 126.26027 * 180.15581 * 27 26 25 44 44 H 1.07995 * 126.26011 * 179.73178 * 28 27 26 45 45 H 1.08002 * 125.89637 * 180.02562 * 29 28 27 46 46 H 1.08994 * 113.61644 * 105.47203 * 30 11 10 47 47 H 1.09000 * 113.69001 * 334.57750 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7463 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0027 11 6 1.0635 -4.8198 -0.0031 12 1 0.2377 -4.6707 0.6926 13 6 0.6161 -5.2471 -1.4109 14 6 0.7041 -6.6993 -0.9126 15 1 1.1219 -7.3893 -1.6457 16 7 -0.5391 -7.1904 -0.3131 17 6 -1.2963 -8.0892 -0.9728 18 8 -0.9474 -8.4927 -2.0654 19 6 -2.5489 -8.5835 -0.3693 20 6 -2.8894 -8.2231 0.9364 21 6 -4.0577 -8.6930 1.4968 22 6 -4.9031 -9.5125 0.7667 23 6 -4.5789 -9.8772 -0.5248 24 6 -3.4038 -9.4180 -1.1029 25 7 -3.0745 -9.7855 -2.4095 26 6 -2.8875 -8.9266 -3.4558 27 6 -2.5802 -9.6545 -4.5480 28 6 -2.5864 -11.0122 -4.1679 29 6 -2.8913 -11.0640 -2.8558 30 6 1.7301 -6.2003 0.1185 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0016 33 1 2.6845 -3.7155 0.8872 34 1 2.6845 -3.7139 -0.8927 35 1 1.3395 -5.0083 -2.1904 36 1 -0.3970 -4.9322 -1.6615 37 1 -0.8173 -6.8686 0.5587 38 1 -2.2360 -7.5805 1.5078 39 1 -4.3177 -8.4172 2.5081 40 1 -5.8189 -9.8721 1.2122 41 1 -5.2406 -10.5202 -1.0860 42 1 -2.9684 -7.8504 -3.4141 43 1 -2.3721 -9.2686 -5.5350 44 1 -2.3838 -11.8563 -4.8104 45 1 -2.9759 -11.9610 -2.2602 46 1 1.6165 -6.6548 1.1026 47 1 2.7584 -6.2234 -0.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277039767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:23 Heat of formation + Delta-G solvation = 74.366449 kcal Electronic energy + Delta-G solvation = -28402.142243 eV Core-core repulsion = 24551.599242 eV Total energy + Delta-G solvation = -3850.543000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60623 -41.25887 -39.96237 -38.95620 -36.36354 -34.73749 -33.97557 -32.99929 -32.02163 -29.86534 -29.67116 -28.50473 -26.66761 -25.69471 -24.80051 -23.97378 -22.98671 -22.13222 -21.15998 -20.95014 -20.34688 -19.45074 -19.07501 -18.52018 -17.26806 -16.79975 -16.40798 -16.37085 -16.12359 -15.92641 -15.60322 -15.56687 -15.13364 -15.04514 -14.61455 -14.52717 -14.41486 -14.31102 -13.71818 -13.60146 -13.37106 -13.18909 -13.13461 -13.03050 -12.94721 -12.88627 -12.68083 -12.43624 -12.23867 -11.93618 -11.76853 -11.38519 -11.17412 -11.03668 -10.86570 -10.35937 -10.26851 -10.01222 -9.31264 -8.98890 -8.95258 -7.95843 -5.24092 -0.41120 0.07693 1.41954 1.46242 1.49359 1.55443 1.75993 1.96104 2.06433 2.20413 2.55532 2.65357 3.36904 3.51340 3.55045 3.58802 3.67587 3.89992 3.92477 3.98219 4.00913 4.23828 4.26902 4.30800 4.31657 4.49887 4.55297 4.64033 4.69440 4.76009 4.81456 4.84286 4.85690 4.89699 4.95894 5.06356 5.12520 5.19659 5.24295 5.32547 5.33064 5.37198 5.40819 5.47984 5.63273 5.69024 6.08457 6.26919 6.29820 6.43625 6.62797 7.12080 7.32896 8.10648 8.33167 9.27607 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002277 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.924558 B =12293.442889 C =12906.141775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.160 3.840 11 C -0.109 4.109 12 H 0.087 0.913 13 C -0.141 4.141 14 C 0.129 3.871 15 H 0.091 0.909 16 N -0.694 5.694 17 C 0.545 3.455 18 O -0.549 6.549 19 C -0.158 4.158 20 C -0.074 4.074 21 C -0.115 4.115 22 C -0.069 4.069 23 C -0.127 4.127 24 C 0.146 3.854 25 N -0.404 5.404 26 C 0.029 3.971 27 C -0.224 4.224 28 C -0.205 4.205 29 C -0.020 4.020 30 C -0.115 4.115 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.023 0.977 34 H 0.019 0.981 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.411 0.589 38 H 0.153 0.847 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.151 0.849 45 H 0.181 0.819 46 H 0.093 0.907 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 -26.304 3.852 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.034 3.966 11 C -0.128 4.128 12 H 0.106 0.894 13 C -0.180 4.180 14 C 0.023 3.977 15 H 0.109 0.891 16 N -0.346 5.346 17 C 0.333 3.667 18 O -0.428 6.428 19 C -0.162 4.162 20 C -0.093 4.093 21 C -0.132 4.132 22 C -0.087 4.087 23 C -0.146 4.146 24 C 0.054 3.946 25 N -0.078 5.078 26 C -0.099 4.099 27 C -0.248 4.248 28 C -0.229 4.229 29 C -0.146 4.146 30 C -0.154 4.154 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.249 0.751 38 H 0.171 0.829 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.169 0.831 45 H 0.198 0.802 46 H 0.112 0.888 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.897 -26.405 3.371 28.400 hybrid contribution 0.150 1.634 -0.132 1.646 sum -9.747 -24.771 3.239 26.816 Atomic orbital electron populations 1.69811 1.06599 1.26120 1.59556 1.25577 0.96430 1.01138 1.03769 0.85211 0.77219 0.79131 0.78215 1.20558 1.22106 1.20193 1.19626 0.91502 0.85549 1.41206 0.90761 1.42568 1.05580 1.01252 1.89339 1.20822 0.93765 0.84541 0.97504 1.22674 0.98552 0.94282 0.97267 0.89432 1.23404 1.01162 0.95953 0.97512 1.21739 0.84891 0.94277 0.96794 0.89070 1.45507 1.23175 1.43322 1.22622 1.18539 0.84157 0.79085 0.84895 1.90872 1.72275 1.58730 1.20926 1.20062 0.95357 1.04107 0.96662 1.21599 0.98026 0.97686 0.91972 1.21675 0.93058 0.96491 1.02020 1.21722 1.00249 0.94588 0.92133 1.21416 0.94096 1.01739 0.97324 1.18021 0.94735 0.98159 0.83660 1.41265 1.54176 1.06761 1.05565 1.21511 1.06516 0.95168 0.86751 1.21013 1.10660 0.94316 0.98771 1.21112 1.09485 0.97009 0.95342 1.22182 1.09616 0.86704 0.96087 1.23225 0.98890 0.93438 0.99828 0.94019 0.79548 0.95894 0.96348 0.89794 0.93225 0.75134 0.82944 0.81313 0.81083 0.83472 0.84313 0.84527 0.83101 0.80180 0.88829 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.77 13.06 21.65 0.28 -59.49 16 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 3 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.95 9.99 84.04 0.84 -13.11 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -38.05 5.60 -343.45 -1.92 -39.97 16 10 C 0.16 6.24 6.10 86.38 0.53 6.77 16 11 C -0.11 -3.24 3.63 -10.27 -0.04 -3.28 16 12 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 13 C -0.14 -4.28 7.43 31.12 0.23 -4.05 16 14 C 0.13 3.20 4.33 45.52 0.20 3.40 16 15 H 0.09 2.52 7.46 -2.39 -0.02 2.50 16 16 N -0.69 -15.55 5.21 -443.17 -2.31 -17.86 16 17 C 0.55 14.43 7.60 86.71 0.66 15.09 16 18 O -0.55 -18.59 12.39 -3.98 -0.05 -18.64 16 19 C -0.16 -3.33 5.88 -20.00 -0.12 -3.45 16 20 C -0.07 -1.00 9.52 22.52 0.21 -0.79 16 21 C -0.11 -1.00 10.02 22.25 0.22 -0.77 16 22 C -0.07 -0.58 10.03 22.30 0.22 -0.36 16 23 C -0.13 -1.78 9.81 22.35 0.22 -1.56 16 24 C 0.15 3.12 5.81 38.49 0.22 3.35 16 25 N -0.40 -10.33 2.02 -345.93 -0.70 -11.03 16 26 C 0.03 0.84 8.16 83.15 0.68 1.51 16 27 C -0.22 -6.27 10.86 22.16 0.24 -6.03 16 28 C -0.21 -5.06 10.86 22.16 0.24 -4.82 16 29 C -0.02 -0.46 11.26 83.16 0.94 0.48 16 30 C -0.12 -2.52 7.39 31.12 0.23 -2.29 16 31 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 32 H 0.37 20.24 7.67 -92.71 -0.71 19.53 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.02 0.74 7.84 -2.39 -0.02 0.72 16 35 H 0.08 2.64 7.90 -2.39 -0.02 2.62 16 36 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.41 7.03 6.77 -92.71 -0.63 6.41 16 38 H 0.15 1.42 6.45 -2.91 -0.02 1.40 16 39 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 40 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 41 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.14 4.18 8.05 -2.91 -0.02 4.16 16 43 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 44 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 45 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.11 2.17 8.10 -2.39 -0.02 2.15 16 Total: -1.00 -76.94 390.63 3.18 -73.77 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.35 Total: 38.71 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 6.20 Total: -13.90 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -4.65 Total: -128.36 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.64 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.94 3.18 -73.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277039767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.132 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds