Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00198 * 2 1 4 4 H 1.48499 * 109.47066 * 89.99929 * 3 2 1 5 5 H 1.48497 * 109.47095 * 209.99754 * 3 2 1 6 6 H 1.48500 * 109.47099 * 329.99884 * 3 2 1 7 7 C 1.38814 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00108 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.46491 * 119.99933 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47174 * 183.80846 * 10 9 7 12 12 H 1.09005 * 109.87274 * 316.09033 * 11 10 9 13 13 C 1.54325 * 109.88642 * 194.91256 * 11 10 9 14 14 C 1.55154 * 102.94384 * 218.39299 * 13 11 10 15 15 C 1.54911 * 101.58206 * 35.49891 * 14 13 11 16 16 N 1.47021 * 109.88113 * 77.10372 * 11 10 9 17 17 C 1.34780 * 125.65120 * 298.32343 * 16 11 10 18 18 O 1.21735 * 119.99497 * 2.22890 * 17 16 11 19 19 C 1.46385 * 120.00259 * 182.22398 * 17 16 11 20 20 N 1.37631 * 126.33107 * 352.91785 * 19 17 16 21 21 H 0.97006 * 125.54500 * 359.97020 * 20 19 17 22 22 C 1.35641 * 108.90261 * 179.97438 * 20 19 17 23 23 C 1.35121 * 109.22341 * 0.02562 * 22 20 19 24 24 C 1.39105 * 126.32831 * 172.60758 * 19 17 16 25 25 C 1.48174 * 126.63131 * 0.03795 * 24 19 17 26 26 C 1.39450 * 120.12908 * 309.72076 * 25 24 19 27 27 C 1.37991 * 119.86426 * 179.74995 * 26 25 24 28 28 C 1.38338 * 120.13268 * 0.55071 * 27 26 25 29 29 C 1.38345 * 120.26635 * 359.70096 * 28 27 26 30 30 C 1.37990 * 120.12891 * 0.02562 * 29 28 27 31 31 H 0.97000 * 120.00257 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99781 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47157 * 303.81064 * 10 9 7 34 34 H 1.09008 * 109.47303 * 63.81321 * 10 9 7 35 35 H 1.09001 * 110.71695 * 336.75715 * 13 11 10 36 36 H 1.08994 * 110.72001 * 100.02312 * 13 11 10 37 37 H 1.09000 * 111.00315 * 277.42675 * 14 13 11 38 38 H 1.08998 * 111.00421 * 153.57364 * 14 13 11 39 39 H 1.09006 * 110.36641 * 204.15149 * 15 14 13 40 40 H 1.08994 * 110.45985 * 81.87804 * 15 14 13 41 41 H 1.07997 * 125.38749 * 179.97438 * 22 20 19 42 42 H 1.07998 * 126.10109 * 179.97438 * 23 22 20 43 43 H 1.08002 * 120.06869 * 0.02562 * 26 25 24 44 44 H 1.08005 * 119.93616 * 180.24883 * 27 26 25 45 45 H 1.07997 * 119.87074 * 179.72209 * 28 27 26 46 46 H 1.08001 * 119.93594 * 180.02562 * 29 28 27 47 47 H 1.07998 * 120.06369 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6527 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0665 -4.8181 -0.0953 12 1 0.2246 -4.6428 0.5746 13 6 1.7698 -6.1408 0.2755 14 6 1.1519 -7.1548 -0.7230 15 6 0.9779 -6.2785 -1.9885 16 7 0.5857 -4.9522 -1.4782 17 6 -0.1007 -4.0177 -2.1653 18 8 -0.3362 -2.9378 -1.6551 19 6 -0.5629 -4.3013 -3.5250 20 7 -0.2566 -5.4140 -4.2749 21 1 0.3077 -6.1492 -3.9885 22 6 -0.8722 -5.3151 -5.4795 23 6 -1.5721 -4.1603 -5.5281 24 6 -1.3977 -3.4988 -4.2958 25 6 -1.9863 -2.1980 -3.8995 26 6 -2.6564 -2.0746 -2.6828 27 6 -3.1980 -0.8593 -2.3169 28 6 -3.0873 0.2323 -3.1594 29 6 -2.4282 0.1147 -4.3701 30 6 -1.8776 -1.0940 -4.7444 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.7348 -3.6855 -0.8533 34 1 2.6324 -3.7447 0.9228 35 1 2.8465 -6.0599 0.1264 36 1 1.5420 -6.4237 1.3032 37 1 0.1890 -7.5188 -0.3645 38 1 1.8351 -7.9828 -0.9120 39 1 0.1943 -6.6861 -2.6274 40 1 1.9171 -6.2112 -2.5374 41 1 -0.8118 -6.0437 -6.2744 42 1 -2.1631 -3.8089 -6.3608 43 1 -2.7474 -2.9272 -2.0262 44 1 -3.7137 -0.7614 -1.3730 45 1 -3.5167 1.1803 -2.8708 46 1 -2.3445 0.9705 -5.0235 47 1 -1.3637 -1.1847 -5.6899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277982553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = 85.454753 kcal Electronic energy + Delta-G solvation = -30636.046449 eV Core-core repulsion = 26785.984273 eV Total energy + Delta-G solvation = -3850.062175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33377 -39.46356 -38.19332 -36.97138 -34.45771 -32.52916 -31.56109 -31.25775 -30.28157 -29.65496 -28.46516 -28.21878 -24.92424 -23.59500 -22.54822 -22.06329 -21.97903 -21.52480 -20.66067 -19.75392 -18.97452 -17.63218 -16.84027 -16.49692 -16.09136 -15.82687 -15.05973 -14.67202 -14.56655 -14.09971 -14.05563 -13.57770 -13.47149 -13.43427 -13.21995 -13.12119 -12.89821 -12.79641 -12.68477 -12.50637 -12.41369 -11.92932 -11.77854 -11.62229 -11.31892 -10.92869 -10.71672 -10.59834 -10.51421 -10.46700 -10.28432 -9.82943 -9.35104 -9.03030 -8.83056 -8.58613 -8.35395 -8.26086 -8.14031 -7.59201 -6.55511 -5.71360 -2.66955 1.47223 2.10037 2.14107 2.91142 3.03766 3.27439 3.66001 3.72932 3.77695 3.86792 4.35455 4.48617 4.49938 4.71447 4.88133 4.94558 4.99296 5.16557 5.20390 5.27868 5.34636 5.45035 5.58578 5.58846 5.62053 5.70157 5.74456 5.84286 5.86415 5.91860 5.99451 6.08713 6.12775 6.15001 6.29893 6.35406 6.49544 6.61004 6.67487 6.76491 6.77802 6.86771 6.98565 7.13901 7.19287 7.27370 7.41769 7.66356 7.82517 8.11180 8.67405 9.21224 9.73688 10.56256 10.74068 11.79211 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007543 B = 0.006612 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.036999 B = 4233.793608 C = 7143.250339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.039 4.039 3 Si 1.076 2.924 4 H -0.300 1.300 5 H -0.300 1.300 6 H -0.290 1.290 7 C -0.335 4.335 8 H 0.051 0.949 9 N -0.729 5.729 10 C 0.154 3.846 11 C 0.132 3.868 12 H 0.074 0.926 13 C -0.123 4.123 14 C -0.129 4.129 15 C 0.088 3.912 16 N -0.619 5.619 17 C 0.581 3.419 18 O -0.447 6.447 19 C -0.025 4.025 20 N -0.547 5.547 21 H 0.416 0.584 22 C 0.006 3.994 23 C -0.195 4.195 24 C -0.042 4.042 25 C -0.018 4.018 26 C -0.065 4.065 27 C -0.104 4.104 28 C -0.110 4.110 29 C -0.127 4.127 30 C -0.107 4.107 31 H 0.265 0.735 32 H 0.383 0.617 33 H 0.014 0.986 34 H 0.018 0.982 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.168 0.832 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 -16.889 -9.683 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.909 3.091 4 H -0.228 1.228 5 H -0.228 1.228 6 H -0.216 1.216 7 C -0.466 4.466 8 H 0.069 0.931 9 N -0.381 5.381 10 C 0.024 3.976 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.167 4.167 15 C -0.036 4.036 16 N -0.357 5.357 17 C 0.368 3.632 18 O -0.316 6.316 19 C -0.139 4.139 20 N -0.150 5.150 21 H 0.259 0.741 22 C -0.128 4.128 23 C -0.219 4.219 24 C -0.050 4.050 25 C -0.019 4.019 26 C -0.083 4.083 27 C -0.122 4.122 28 C -0.128 4.128 29 C -0.145 4.145 30 C -0.126 4.126 31 H 0.077 0.923 32 H 0.223 0.777 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.185 0.815 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.436 -14.636 -9.364 17.711 hybrid contribution 0.653 -2.130 -0.050 2.229 sum -2.783 -16.766 -9.414 19.429 Atomic orbital electron populations 1.70659 1.05700 1.29395 1.52145 1.25472 0.97293 1.00106 1.00991 0.83309 0.73836 0.76203 0.75776 1.22801 1.22753 1.21613 1.19899 0.91260 0.86359 1.49104 0.93073 1.42703 1.06025 0.99633 1.89735 1.20868 0.92945 0.86252 0.97511 1.21906 0.97360 0.95669 0.82198 0.90784 1.22636 1.00607 0.93300 0.99652 1.22738 1.01855 0.97382 0.94755 1.22470 0.99232 0.84470 0.97473 1.48436 1.57022 1.15262 1.14954 1.16713 0.79190 0.83814 0.83475 1.90992 1.53153 1.20397 1.67032 1.20617 1.07960 0.91012 0.94300 1.42786 1.40124 1.18685 1.13385 0.74069 1.21829 1.00782 1.00925 0.89284 1.20870 1.06438 0.96208 0.98428 1.18596 0.98825 0.94202 0.93401 1.17951 0.98084 0.90953 0.94868 1.20905 0.95661 0.97492 0.94244 1.20908 0.99930 0.92790 0.98609 1.21043 0.99315 0.98173 0.94302 1.20873 0.99452 0.96946 0.97252 1.20951 0.99949 0.92465 0.99210 0.92263 0.77658 0.96847 0.96475 0.90249 0.89919 0.90495 0.89885 0.91508 0.91523 0.81506 0.84025 0.87225 0.86575 0.86782 0.86786 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.91 13.70 55.49 0.76 -30.15 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 3 Si 1.08 28.50 29.92 -169.99 -5.09 23.42 16 4 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 7 C -0.33 -10.42 9.99 -15.06 -0.15 -10.57 16 8 H 0.05 1.59 7.83 -52.49 -0.41 1.18 16 9 N -0.73 -20.35 4.29 -59.91 -0.26 -20.61 16 10 C 0.15 3.40 5.61 -4.05 -0.02 3.38 16 11 C 0.13 2.24 3.06 -66.95 -0.21 2.03 16 12 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 13 C -0.12 -1.42 6.43 -24.90 -0.16 -1.58 16 14 C -0.13 -1.13 7.08 -24.58 -0.17 -1.31 16 15 C 0.09 0.94 5.50 -2.53 -0.01 0.93 16 16 N -0.62 -10.07 3.06 -164.64 -0.50 -10.58 16 17 C 0.58 11.48 7.51 -12.98 -0.10 11.38 16 18 O -0.45 -10.98 10.00 5.16 0.05 -10.93 16 19 C -0.03 -0.43 6.86 -81.66 -0.56 -0.99 16 20 N -0.55 -6.58 5.39 -9.24 -0.05 -6.63 16 21 H 0.42 3.79 5.16 -40.82 -0.21 3.58 16 22 C 0.01 0.06 11.86 -16.98 -0.20 -0.14 16 23 C -0.19 -2.60 10.73 -39.67 -0.43 -3.03 16 24 C -0.04 -0.72 5.67 -104.47 -0.59 -1.32 16 25 C -0.02 -0.35 5.21 -104.92 -0.55 -0.89 16 26 C -0.06 -1.30 7.71 -39.22 -0.30 -1.60 16 27 C -0.10 -2.06 10.03 -39.64 -0.40 -2.46 16 28 C -0.11 -2.06 10.04 -39.51 -0.40 -2.45 16 29 C -0.13 -2.26 10.03 -39.63 -0.40 -2.66 16 30 C -0.11 -1.96 9.73 -39.22 -0.38 -2.34 16 31 H 0.27 8.86 6.66 -40.82 -0.27 8.59 16 32 H 0.38 11.14 3.85 -40.82 -0.16 10.98 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.39 8.07 -51.92 -0.42 -0.03 16 35 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.59 5.45 -51.93 -0.28 0.31 16 40 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 41 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 2.19 7.57 -52.49 -0.40 1.80 16 44 H 0.12 2.15 8.06 -52.48 -0.42 1.72 16 45 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -39.18 375.82 -10.97 -50.15 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.42 Total: 14.62 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -5.12 Total: -14.95 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -0.05 Total: -67.98 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.05 Total: -10.93 kcal Atomic # 14 Polarization: 28.50 SS G_CDS: -5.09 Total: 23.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -39.18 -10.97 -50.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277982553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.607 kcal (2) G-P(sol) polarization free energy of solvation -39.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds