Wall clock time and date at job start Tue Mar 31 2020 22:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00198 * 2 1 4 4 H 1.48499 * 109.47066 * 89.99929 * 3 2 1 5 5 H 1.48497 * 109.47095 * 209.99754 * 3 2 1 6 6 H 1.48500 * 109.47099 * 329.99884 * 3 2 1 7 7 C 1.38814 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00108 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99935 * 0.02562 * 7 2 1 10 10 C 1.46491 * 119.99933 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47174 * 183.80846 * 10 9 7 12 12 H 1.09005 * 109.87274 * 316.09033 * 11 10 9 13 13 C 1.54325 * 109.88642 * 194.91256 * 11 10 9 14 14 C 1.55154 * 102.94384 * 218.39299 * 13 11 10 15 15 C 1.54911 * 101.58206 * 35.49891 * 14 13 11 16 16 N 1.47021 * 109.88113 * 77.10372 * 11 10 9 17 17 C 1.34780 * 125.65120 * 298.32343 * 16 11 10 18 18 O 1.21735 * 119.99497 * 2.22890 * 17 16 11 19 19 C 1.46385 * 120.00259 * 182.22398 * 17 16 11 20 20 N 1.37631 * 126.33107 * 352.91785 * 19 17 16 21 21 H 0.97006 * 125.54500 * 359.97020 * 20 19 17 22 22 C 1.35641 * 108.90261 * 179.97438 * 20 19 17 23 23 C 1.35121 * 109.22341 * 0.02562 * 22 20 19 24 24 C 1.39105 * 126.32831 * 172.60758 * 19 17 16 25 25 C 1.48174 * 126.63131 * 0.03795 * 24 19 17 26 26 C 1.39450 * 120.12908 * 309.72076 * 25 24 19 27 27 C 1.37991 * 119.86426 * 179.74995 * 26 25 24 28 28 C 1.38338 * 120.13268 * 0.55071 * 27 26 25 29 29 C 1.38345 * 120.26635 * 359.70096 * 28 27 26 30 30 C 1.37990 * 120.12891 * 0.02562 * 29 28 27 31 31 H 0.97000 * 120.00257 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99781 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47157 * 303.81064 * 10 9 7 34 34 H 1.09008 * 109.47303 * 63.81321 * 10 9 7 35 35 H 1.09001 * 110.71695 * 336.75715 * 13 11 10 36 36 H 1.08994 * 110.72001 * 100.02312 * 13 11 10 37 37 H 1.09000 * 111.00315 * 277.42675 * 14 13 11 38 38 H 1.08998 * 111.00421 * 153.57364 * 14 13 11 39 39 H 1.09006 * 110.36641 * 204.15149 * 15 14 13 40 40 H 1.08994 * 110.45985 * 81.87804 * 15 14 13 41 41 H 1.07997 * 125.38749 * 179.97438 * 22 20 19 42 42 H 1.07998 * 126.10109 * 179.97438 * 23 22 20 43 43 H 1.08002 * 120.06869 * 0.02562 * 26 25 24 44 44 H 1.08005 * 119.93616 * 180.24883 * 27 26 25 45 45 H 1.07997 * 119.87074 * 179.72209 * 28 27 26 46 46 H 1.08001 * 119.93594 * 180.02562 * 29 28 27 47 47 H 1.07998 * 120.06369 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6527 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0665 -4.8181 -0.0953 12 1 0.2246 -4.6428 0.5746 13 6 1.7698 -6.1408 0.2755 14 6 1.1519 -7.1548 -0.7230 15 6 0.9779 -6.2785 -1.9885 16 7 0.5857 -4.9522 -1.4782 17 6 -0.1007 -4.0177 -2.1653 18 8 -0.3362 -2.9378 -1.6551 19 6 -0.5629 -4.3013 -3.5250 20 7 -0.2566 -5.4140 -4.2749 21 1 0.3077 -6.1492 -3.9885 22 6 -0.8722 -5.3151 -5.4795 23 6 -1.5721 -4.1603 -5.5281 24 6 -1.3977 -3.4988 -4.2958 25 6 -1.9863 -2.1980 -3.8995 26 6 -2.6564 -2.0746 -2.6828 27 6 -3.1980 -0.8593 -2.3169 28 6 -3.0873 0.2323 -3.1594 29 6 -2.4282 0.1147 -4.3701 30 6 -1.8776 -1.0940 -4.7444 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.7348 -3.6855 -0.8533 34 1 2.6324 -3.7447 0.9228 35 1 2.8465 -6.0599 0.1264 36 1 1.5420 -6.4237 1.3032 37 1 0.1890 -7.5188 -0.3645 38 1 1.8351 -7.9828 -0.9120 39 1 0.1943 -6.6861 -2.6274 40 1 1.9171 -6.2112 -2.5374 41 1 -0.8118 -6.0437 -6.2744 42 1 -2.1631 -3.8089 -6.3608 43 1 -2.7474 -2.9272 -2.0262 44 1 -3.7137 -0.7614 -1.3730 45 1 -3.5167 1.1803 -2.8708 46 1 -2.3445 0.9705 -5.0235 47 1 -1.3637 -1.1847 -5.6899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277982553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:46 Heat of formation + Delta-G solvation = 59.951263 kcal Electronic energy + Delta-G solvation = -30637.152363 eV Core-core repulsion = 26785.984273 eV Total energy + Delta-G solvation = -3851.168090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45329 -40.69729 -39.59519 -38.32896 -36.51810 -33.82523 -33.23809 -32.63300 -31.73058 -30.91952 -30.00504 -29.44094 -26.53429 -25.17759 -24.34242 -23.51190 -23.36501 -22.55430 -21.74708 -21.05431 -20.21957 -19.30349 -18.58202 -17.75909 -17.47918 -17.21715 -16.43135 -16.11022 -15.88006 -15.68036 -15.47130 -15.30396 -15.17629 -14.76178 -14.56221 -14.45293 -14.21433 -14.10677 -13.92160 -13.74917 -13.66319 -13.41192 -13.12028 -12.98428 -12.59159 -12.49674 -12.21622 -12.15739 -11.99325 -11.91077 -11.89278 -11.70629 -11.16053 -10.86267 -10.79585 -10.24666 -9.73970 -9.63163 -9.37721 -8.89488 -8.84562 -8.22007 -5.10549 0.14845 0.64907 0.82953 1.49799 1.63907 1.77386 1.84008 1.86938 2.24558 2.42429 2.74657 3.04361 3.43458 3.50549 3.55445 3.74843 3.88659 3.95049 4.07419 4.11086 4.17262 4.22996 4.25099 4.30111 4.33864 4.40042 4.44945 4.64581 4.67003 4.69718 4.74931 4.78622 4.82259 4.89804 5.02399 5.04864 5.15539 5.22991 5.26217 5.28601 5.44919 5.56448 5.62602 5.68493 5.73472 5.80175 5.93073 6.22501 6.50790 6.58300 6.71193 7.18645 7.47873 8.29180 8.41518 9.30107 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007543 B = 0.006612 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.036999 B = 4233.793608 C = 7143.250339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.099 4.099 3 Si 1.126 2.874 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.293 1.293 7 C -0.344 4.344 8 H 0.047 0.953 9 N -0.743 5.743 10 C 0.152 3.848 11 C 0.134 3.866 12 H 0.047 0.953 13 C -0.114 4.114 14 C -0.113 4.113 15 C 0.077 3.923 16 N -0.620 5.620 17 C 0.567 3.433 18 O -0.512 6.512 19 C -0.058 4.058 20 N -0.529 5.529 21 H 0.430 0.570 22 C 0.048 3.952 23 C -0.213 4.213 24 C -0.068 4.068 25 C -0.028 4.028 26 C -0.082 4.082 27 C -0.127 4.127 28 C -0.127 4.127 29 C -0.130 4.130 30 C -0.119 4.119 31 H 0.250 0.750 32 H 0.375 0.625 33 H 0.000 1.000 34 H 0.021 0.979 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.226 0.774 42 H 0.161 0.839 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.131 0.869 46 H 0.145 0.855 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -19.912 -12.113 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.293 4.293 3 Si 0.952 3.048 4 H -0.209 1.209 5 H -0.208 1.208 6 H -0.220 1.220 7 C -0.476 4.476 8 H 0.065 0.935 9 N -0.394 5.394 10 C 0.024 3.976 11 C 0.030 3.970 12 H 0.065 0.935 13 C -0.153 4.153 14 C -0.150 4.150 15 C -0.044 4.044 16 N -0.356 5.356 17 C 0.356 3.644 18 O -0.386 6.386 19 C -0.172 4.172 20 N -0.133 5.133 21 H 0.277 0.723 22 C -0.088 4.088 23 C -0.236 4.236 24 C -0.077 4.077 25 C -0.029 4.029 26 C -0.101 4.101 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.148 4.148 30 C -0.137 4.137 31 H 0.061 0.939 32 H 0.214 0.786 33 H 0.018 0.982 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.242 0.758 42 H 0.178 0.822 43 H 0.111 0.889 44 H 0.131 0.869 45 H 0.149 0.851 46 H 0.163 0.837 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.768 -17.780 -11.785 21.404 hybrid contribution 0.182 -1.319 0.656 1.484 sum -1.586 -19.099 -11.129 22.162 Atomic orbital electron populations 1.70768 1.06652 1.28514 1.54290 1.27012 0.97451 1.03930 1.00907 0.82665 0.73226 0.72150 0.76736 1.20858 1.20846 1.21996 1.20236 0.91238 0.88049 1.48118 0.93543 1.42930 1.05968 1.00803 1.89694 1.21048 0.93778 0.86195 0.96608 1.21830 0.95591 0.96723 0.82858 0.93487 1.22636 1.00523 0.90629 1.01492 1.22774 1.03005 0.97090 0.92151 1.22874 1.00587 0.81898 0.99088 1.48512 1.55731 1.16856 1.14483 1.17302 0.78863 0.83597 0.84647 1.90948 1.55839 1.23160 1.68638 1.20191 1.09944 0.93326 0.93741 1.42733 1.39777 1.17535 1.13209 0.72262 1.22681 0.96919 1.00235 0.88950 1.21161 1.07863 0.97094 0.97507 1.18851 0.99509 0.93863 0.95491 1.18313 0.97351 0.92796 0.94400 1.20883 0.97015 0.97157 0.95028 1.21084 1.00801 0.93579 0.99092 1.21325 0.99992 0.98441 0.94791 1.21280 0.98372 0.97949 0.97174 1.21308 1.00070 0.92321 1.00039 0.93933 0.78573 0.98212 0.96117 0.89467 0.88319 0.89771 0.85785 0.89220 0.89976 0.75805 0.82161 0.88897 0.86915 0.85073 0.83726 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -66.47 13.70 21.65 0.30 -66.17 16 2 C -0.10 -6.50 5.50 84.86 0.47 -6.04 16 3 Si 1.13 58.82 29.92 68.60 2.05 60.87 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 7 C -0.34 -22.32 9.99 84.03 0.84 -21.48 16 8 H 0.05 2.97 7.83 -2.91 -0.02 2.95 16 9 N -0.74 -43.87 4.29 -343.46 -1.47 -45.35 16 10 C 0.15 6.99 5.61 86.38 0.48 7.47 16 11 C 0.13 4.66 3.06 45.34 0.14 4.79 16 12 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 13 C -0.11 -2.39 6.43 31.78 0.20 -2.18 16 14 C -0.11 -1.51 7.08 31.99 0.23 -1.28 16 15 C 0.08 1.43 5.50 86.86 0.48 1.90 16 16 N -0.62 -20.29 3.06 -793.01 -2.43 -22.72 16 17 C 0.57 23.44 7.51 86.36 0.65 24.08 16 18 O -0.51 -27.21 10.00 -4.46 -0.04 -27.26 16 19 C -0.06 -1.97 6.86 40.56 0.28 -1.69 16 20 N -0.53 -11.04 5.39 -183.15 -0.99 -12.03 16 21 H 0.43 6.02 5.16 -92.70 -0.48 5.54 16 22 C 0.05 0.80 11.86 83.39 0.99 1.79 16 23 C -0.21 -5.15 10.73 22.21 0.24 -4.91 16 24 C -0.07 -2.37 5.67 -19.77 -0.11 -2.48 16 25 C -0.03 -1.13 5.21 -20.05 -0.10 -1.24 16 26 C -0.08 -3.63 7.71 22.50 0.17 -3.46 16 27 C -0.13 -5.51 10.03 22.23 0.22 -5.29 16 28 C -0.13 -5.01 10.04 22.32 0.22 -4.79 16 29 C -0.13 -4.71 10.03 22.24 0.22 -4.49 16 30 C -0.12 -4.43 9.73 22.50 0.22 -4.21 16 31 H 0.25 17.90 6.66 -92.71 -0.62 17.29 16 32 H 0.37 23.52 3.85 -92.71 -0.36 23.16 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 35 H 0.09 1.72 7.85 -2.39 -0.02 1.70 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 1.24 5.45 -2.38 -0.01 1.22 16 40 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 41 H 0.23 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 43 H 0.09 4.23 7.57 -2.91 -0.02 4.21 16 44 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 46 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 47 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -94.94 375.82 3.57 -91.37 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: 0.31 Total: 44.79 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.84 Total: -23.50 kcal Atomic # 7 Polarization: -141.67 SS G_CDS: -4.59 Total: -146.27 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.04 Total: -27.26 kcal Atomic # 14 Polarization: 58.82 SS G_CDS: 2.05 Total: 60.87 kcal Total: -94.94 3.57 -91.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277982553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.319 kcal (2) G-P(sol) polarization free energy of solvation -94.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds