Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47091 * 269.99872 * 3 2 1 5 5 H 1.48498 * 109.47649 * 29.99969 * 3 2 1 6 6 H 1.48505 * 109.47154 * 150.00067 * 3 2 1 7 7 C 1.38810 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99665 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47023 * 299.99973 * 10 9 7 13 13 C 1.52999 * 109.47306 * 295.00017 * 12 10 9 14 14 N 1.46505 * 109.47189 * 180.02562 * 13 12 10 15 15 C 1.34777 * 119.99722 * 180.02562 * 14 13 12 16 16 O 1.21513 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.48154 * 119.99528 * 179.71956 * 15 14 13 18 18 C 1.39810 * 120.92448 * 359.97438 * 17 15 14 19 19 C 1.38148 * 119.00329 * 179.73131 * 18 17 15 20 20 N 1.31818 * 120.89538 * 0.54936 * 19 18 17 21 21 C 1.31817 * 122.04491 * 359.71975 * 20 19 18 22 22 C 1.38146 * 120.89685 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47157 * 60.00181 * 10 9 7 24 24 C 1.50691 * 109.47266 * 64.99960 * 23 10 9 25 25 C 1.38241 * 119.99903 * 269.72795 * 24 23 10 26 26 C 1.38240 * 119.99859 * 179.76542 * 25 24 23 27 27 C 1.38239 * 119.99801 * 0.50751 * 26 25 24 28 28 C 1.38238 * 119.99922 * 359.74814 * 27 26 25 29 29 C 1.38230 * 120.00071 * 90.00058 * 24 23 10 30 30 H 0.97005 * 119.99710 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00838 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47241 * 175.00054 * 12 10 9 33 33 H 1.08998 * 109.47370 * 55.00693 * 12 10 9 34 34 H 1.08995 * 109.47276 * 60.00255 * 13 12 10 35 35 H 1.09001 * 109.47054 * 299.99973 * 13 12 10 36 36 H 0.97000 * 119.99795 * 359.97438 * 14 13 12 37 37 H 1.08005 * 120.50079 * 359.97073 * 18 17 15 38 38 H 1.08000 * 119.55392 * 180.29346 * 19 18 17 39 39 H 1.07996 * 119.55061 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.49992 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47020 * 185.00040 * 23 10 9 42 42 H 1.09001 * 109.46960 * 304.99906 * 23 10 9 43 43 H 1.07993 * 119.99700 * 359.97438 * 25 24 23 44 44 H 1.07991 * 120.00028 * 180.22698 * 26 25 24 45 45 H 1.08001 * 119.99783 * 179.72205 * 27 26 25 46 46 H 1.08002 * 119.99371 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.00313 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 1.3496 -4.4853 0.0001 12 6 2.9375 -3.7378 -1.2487 13 6 2.0509 -3.7823 -2.4948 14 7 2.8931 -3.8606 -3.6910 15 6 2.3258 -3.9100 -4.9125 16 8 1.1158 -3.8902 -5.0217 17 6 3.1777 -3.9828 -6.1224 18 6 4.5719 -4.0008 -6.0195 19 6 5.3279 -4.0750 -7.1734 20 7 4.7519 -4.1176 -8.3583 21 6 3.4415 -4.0973 -8.5001 22 6 2.6098 -4.0292 -7.3992 23 6 2.9375 -3.7379 1.2498 24 6 2.0642 -3.7817 2.4771 25 6 1.6929 -2.6067 3.1035 26 6 0.8877 -2.6467 4.2265 27 6 0.4626 -3.8623 4.7292 28 6 0.8383 -5.0375 4.1058 29 6 1.6390 -4.9972 2.9797 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 3.5485 -4.6395 -1.2051 33 1 3.5851 -2.8622 -1.2946 34 1 1.4400 -2.8807 -2.5385 35 1 1.4034 -4.6580 -2.4489 36 1 3.8591 -3.8760 -3.6038 37 1 5.0507 -3.9613 -5.0521 38 1 6.4055 -4.0943 -7.1039 39 1 3.0124 -4.1335 -9.4905 40 1 1.5370 -4.0134 -7.5229 41 1 3.5484 -4.6395 1.2061 42 1 3.5850 -2.8622 1.2957 43 1 2.0290 -1.6574 2.7136 44 1 0.5947 -1.7286 4.7138 45 1 -0.1627 -3.8937 5.6092 46 1 0.5064 -5.9871 4.4988 47 1 1.9331 -5.9155 2.4931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278532593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = 30.361609 kcal Electronic energy + Delta-G solvation = -28129.822082 eV Core-core repulsion = 24277.370888 eV Total energy + Delta-G solvation = -3852.451193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67470 -39.08061 -38.79044 -36.62476 -34.60238 -32.93057 -32.48334 -31.54324 -30.95539 -30.32065 -29.17653 -27.16123 -25.01709 -24.13560 -23.70828 -22.73993 -21.99019 -20.80340 -20.72266 -19.54268 -18.28980 -17.13264 -16.74634 -16.18583 -15.93383 -15.58429 -15.43122 -15.22934 -15.05256 -14.60146 -14.38695 -14.16980 -14.03327 -13.80015 -13.59660 -13.28302 -13.00317 -12.89478 -12.83271 -12.41525 -11.97506 -11.69727 -11.49224 -11.37482 -11.04861 -10.91794 -10.82133 -10.54232 -10.40317 -10.38219 -10.23691 -10.10605 -9.82765 -9.68575 -9.60053 -9.47333 -8.98832 -8.85515 -8.36254 -8.09179 -6.99635 -5.79953 -3.08906 0.52673 0.82534 1.89910 1.98323 2.86893 3.14418 3.37919 3.42897 3.46309 3.67528 4.14618 4.34273 4.42402 4.54492 4.55472 4.72936 4.82483 5.21132 5.29157 5.30904 5.37889 5.42101 5.47559 5.49642 5.55485 5.58546 5.65940 5.78408 5.83091 5.92785 6.00373 6.07717 6.11615 6.21128 6.31975 6.34445 6.39670 6.44569 6.62196 6.64926 6.67750 6.75938 6.89340 6.95961 7.11732 7.34816 7.53483 7.60825 7.62784 7.64381 8.21002 8.36766 9.48971 10.06118 10.40979 11.41730 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.002716 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.292711 B =10307.116430 C =11790.950030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.895 3.105 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.715 5.715 10 C 0.187 3.813 11 H 0.055 0.945 12 C -0.140 4.140 13 C 0.126 3.874 14 N -0.715 5.715 15 C 0.550 3.450 16 O -0.528 6.528 17 C -0.081 4.081 18 C -0.143 4.143 19 C 0.095 3.905 20 N -0.474 5.474 21 C 0.094 3.906 22 C -0.117 4.117 23 C -0.093 4.093 24 C -0.057 4.057 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.140 0.860 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.149 0.851 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.011 -11.428 -4.774 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.726 3.274 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.075 3.925 11 H 0.074 0.926 12 C -0.180 4.180 13 C 0.003 3.997 14 N -0.366 5.366 15 C 0.335 3.665 16 O -0.404 6.404 17 C -0.092 4.092 18 C -0.164 4.164 19 C -0.062 4.062 20 N -0.184 5.184 21 C -0.062 4.062 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.726 -11.296 -5.540 15.311 hybrid contribution 0.037 1.149 0.862 1.437 sum 8.763 -10.146 -4.678 14.199 Atomic orbital electron populations 1.69653 1.04984 1.25535 1.56976 1.24672 0.95295 0.97325 1.02995 0.86392 0.78768 0.84710 0.77503 1.21912 1.21876 1.20830 1.19004 0.90754 0.83919 1.42981 0.91309 1.42372 1.05672 0.99544 1.87889 1.20050 0.92432 0.90087 0.89958 0.92643 1.22284 0.99072 1.01121 0.95521 1.21464 0.93282 1.03105 0.81814 1.46028 1.10620 1.73777 1.06164 1.18156 0.87650 0.77540 0.83169 1.90803 1.13919 1.49189 1.86530 1.20543 0.93885 1.00021 0.94745 1.22385 0.93391 0.99626 1.00976 1.22755 1.00705 0.95614 0.87152 1.67562 1.12943 1.10525 1.27357 1.22813 0.88722 0.95601 0.99097 1.22365 1.02668 0.97026 0.91741 1.21145 0.97308 1.01253 0.93595 1.19786 0.97694 0.92586 0.95664 1.21283 0.95992 0.99006 0.93434 1.21147 0.98531 0.97284 0.97229 1.20983 1.01190 0.92947 1.00312 1.20929 0.99677 0.97571 0.96914 1.20959 0.99606 0.97264 0.96961 0.93540 0.78047 0.93034 0.90813 0.89163 0.92297 0.76939 0.84250 0.82136 0.82028 0.83373 0.92731 0.90681 0.84878 0.86896 0.87233 0.87194 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 13.06 55.49 0.72 -25.65 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.89 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.24 -5.67 7.90 -15.06 -0.12 -5.79 16 8 H 0.07 1.62 6.64 -52.49 -0.35 1.27 16 9 N -0.72 -15.58 4.14 -53.43 -0.22 -15.80 16 10 C 0.19 3.19 2.67 -67.93 -0.18 3.00 16 11 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 12 C -0.14 -2.07 4.73 -26.73 -0.13 -2.19 16 13 C 0.13 2.02 5.56 -4.04 -0.02 2.00 16 14 N -0.72 -9.70 5.51 -61.15 -0.34 -10.04 16 15 C 0.55 8.34 7.80 -12.19 -0.10 8.25 16 16 O -0.53 -10.15 16.45 5.35 0.09 -10.06 16 17 C -0.08 -0.98 5.91 -104.65 -0.62 -1.60 16 18 C -0.14 -1.34 9.62 -39.03 -0.38 -1.72 16 19 C 0.09 0.85 11.17 -17.59 -0.20 0.66 16 20 N -0.47 -5.06 10.34 -13.30 -0.14 -5.20 16 21 C 0.09 0.92 11.17 -17.59 -0.20 0.73 16 22 C -0.12 -1.31 9.68 -39.02 -0.38 -1.69 16 23 C -0.09 -1.49 4.75 -27.89 -0.13 -1.62 16 24 C -0.06 -0.97 4.95 -104.63 -0.52 -1.49 16 25 C -0.08 -1.47 9.32 -39.58 -0.37 -1.84 16 26 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.14 -2.06 10.05 -39.58 -0.40 -2.46 16 28 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 29 C -0.13 -1.97 9.70 -39.59 -0.38 -2.36 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.39 9.56 8.03 -40.82 -0.33 9.23 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.07 1.18 7.11 -51.93 -0.37 0.81 16 34 H 0.09 1.85 7.75 -51.93 -0.40 1.45 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 4.07 6.62 -40.82 -0.27 3.80 16 37 H 0.14 0.93 6.54 -52.48 -0.34 0.59 16 38 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.15 1.62 7.74 -52.49 -0.41 1.21 16 41 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 43 H 0.13 2.77 7.39 -52.49 -0.39 2.38 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -31.20 394.99 -10.54 -41.74 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -6.58 Total: 16.03 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -5.00 Total: -13.21 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.03 Total: -56.69 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.20 -10.54 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.104 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds