Wall clock time and date at job start Tue Mar 31 2020 22:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47091 * 269.99872 * 3 2 1 5 5 H 1.48498 * 109.47649 * 29.99969 * 3 2 1 6 6 H 1.48505 * 109.47154 * 150.00067 * 3 2 1 7 7 C 1.38810 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99665 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47255 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47023 * 299.99973 * 10 9 7 13 13 C 1.52999 * 109.47306 * 295.00017 * 12 10 9 14 14 N 1.46505 * 109.47189 * 180.02562 * 13 12 10 15 15 C 1.34777 * 119.99722 * 180.02562 * 14 13 12 16 16 O 1.21513 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.48154 * 119.99528 * 179.71956 * 15 14 13 18 18 C 1.39810 * 120.92448 * 359.97438 * 17 15 14 19 19 C 1.38148 * 119.00329 * 179.73131 * 18 17 15 20 20 N 1.31818 * 120.89538 * 0.54936 * 19 18 17 21 21 C 1.31817 * 122.04491 * 359.71975 * 20 19 18 22 22 C 1.38146 * 120.89685 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47157 * 60.00181 * 10 9 7 24 24 C 1.50691 * 109.47266 * 64.99960 * 23 10 9 25 25 C 1.38241 * 119.99903 * 269.72795 * 24 23 10 26 26 C 1.38240 * 119.99859 * 179.76542 * 25 24 23 27 27 C 1.38239 * 119.99801 * 0.50751 * 26 25 24 28 28 C 1.38238 * 119.99922 * 359.74814 * 27 26 25 29 29 C 1.38230 * 120.00071 * 90.00058 * 24 23 10 30 30 H 0.97005 * 119.99710 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00838 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47241 * 175.00054 * 12 10 9 33 33 H 1.08998 * 109.47370 * 55.00693 * 12 10 9 34 34 H 1.08995 * 109.47276 * 60.00255 * 13 12 10 35 35 H 1.09001 * 109.47054 * 299.99973 * 13 12 10 36 36 H 0.97000 * 119.99795 * 359.97438 * 14 13 12 37 37 H 1.08005 * 120.50079 * 359.97073 * 18 17 15 38 38 H 1.08000 * 119.55392 * 180.29346 * 19 18 17 39 39 H 1.07996 * 119.55061 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.49992 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47020 * 185.00040 * 23 10 9 42 42 H 1.09001 * 109.46960 * 304.99906 * 23 10 9 43 43 H 1.07993 * 119.99700 * 359.97438 * 25 24 23 44 44 H 1.07991 * 120.00028 * 180.22698 * 26 25 24 45 45 H 1.08001 * 119.99783 * 179.72205 * 27 26 25 46 46 H 1.08002 * 119.99371 * 179.97438 * 28 27 26 47 47 H 1.08004 * 120.00313 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 1.3496 -4.4853 0.0001 12 6 2.9375 -3.7378 -1.2487 13 6 2.0509 -3.7823 -2.4948 14 7 2.8931 -3.8606 -3.6910 15 6 2.3258 -3.9100 -4.9125 16 8 1.1158 -3.8902 -5.0217 17 6 3.1777 -3.9828 -6.1224 18 6 4.5719 -4.0008 -6.0195 19 6 5.3279 -4.0750 -7.1734 20 7 4.7519 -4.1176 -8.3583 21 6 3.4415 -4.0973 -8.5001 22 6 2.6098 -4.0292 -7.3992 23 6 2.9375 -3.7379 1.2498 24 6 2.0642 -3.7817 2.4771 25 6 1.6929 -2.6067 3.1035 26 6 0.8877 -2.6467 4.2265 27 6 0.4626 -3.8623 4.7292 28 6 0.8383 -5.0375 4.1058 29 6 1.6390 -4.9972 2.9797 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 3.5485 -4.6395 -1.2051 33 1 3.5851 -2.8622 -1.2946 34 1 1.4400 -2.8807 -2.5385 35 1 1.4034 -4.6580 -2.4489 36 1 3.8591 -3.8760 -3.6038 37 1 5.0507 -3.9613 -5.0521 38 1 6.4055 -4.0943 -7.1039 39 1 3.0124 -4.1335 -9.4905 40 1 1.5370 -4.0134 -7.5229 41 1 3.5484 -4.6395 1.2061 42 1 3.5850 -2.8622 1.2957 43 1 2.0290 -1.6574 2.7136 44 1 0.5947 -1.7286 4.7138 45 1 -0.1627 -3.8937 5.6092 46 1 0.5064 -5.9871 4.4988 47 1 1.9331 -5.9155 2.4931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278532593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:16 Heat of formation + Delta-G solvation = 11.288454 kcal Electronic energy + Delta-G solvation = -28130.649156 eV Core-core repulsion = 24277.370888 eV Total energy + Delta-G solvation = -3853.278267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60390 -40.23184 -39.98818 -38.05579 -35.96232 -34.30001 -33.76817 -32.45892 -32.15776 -31.56598 -30.76097 -28.50876 -26.14598 -25.83206 -24.55132 -23.90097 -23.24479 -22.08536 -21.85441 -20.99087 -19.40386 -18.81119 -17.71967 -17.41998 -17.06725 -16.70003 -16.49025 -16.41390 -16.24679 -15.96961 -15.82870 -15.52069 -15.10656 -14.88018 -14.83081 -14.59302 -14.34001 -14.19195 -14.09513 -13.77813 -13.09739 -13.01356 -12.89599 -12.77919 -12.67332 -12.47339 -12.33482 -12.16739 -11.73055 -11.67761 -11.57488 -11.43905 -11.23956 -11.01440 -10.84001 -10.54204 -10.20507 -10.13593 -9.62622 -9.39077 -8.84081 -7.82797 -5.07353 -0.36099 0.08966 0.65595 0.72321 1.45454 1.46779 1.53234 1.78886 2.02684 2.61004 2.84376 3.08269 3.47788 3.50988 3.53550 3.80675 3.94042 3.94559 4.00693 4.06551 4.17322 4.22391 4.31467 4.39965 4.44994 4.52000 4.61407 4.68151 4.76364 4.80055 4.80957 4.84610 4.89058 4.98959 5.05390 5.11942 5.16643 5.27104 5.38126 5.41286 5.46397 5.53709 5.60306 5.65474 5.74066 5.82617 6.05231 6.35101 6.37814 6.43904 6.88438 7.08752 7.45105 8.21956 8.43972 9.41028 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011566 B = 0.002716 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.292711 B =10307.116430 C =11790.950030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.944 3.056 4 H -0.299 1.299 5 H -0.307 1.307 6 H -0.267 1.267 7 C -0.196 4.196 8 H 0.079 0.921 9 N -0.723 5.723 10 C 0.181 3.819 11 H 0.063 0.937 12 C -0.125 4.125 13 C 0.136 3.864 14 N -0.701 5.701 15 C 0.546 3.454 16 O -0.580 6.580 17 C -0.102 4.102 18 C -0.133 4.133 19 C 0.096 3.904 20 N -0.490 5.490 21 C 0.096 3.904 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.130 4.130 29 C -0.129 4.129 30 H 0.242 0.758 31 H 0.368 0.632 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.415 0.585 37 H 0.169 0.831 38 H 0.196 0.804 39 H 0.188 0.812 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.135 0.865 46 H 0.145 0.855 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.051 -14.382 -4.670 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.777 3.223 4 H -0.227 1.227 5 H -0.235 1.235 6 H -0.191 1.191 7 C -0.328 4.328 8 H 0.097 0.903 9 N -0.360 5.360 10 C 0.071 3.929 11 H 0.081 0.919 12 C -0.165 4.165 13 C 0.012 3.988 14 N -0.353 5.353 15 C 0.333 3.667 16 O -0.460 6.460 17 C -0.113 4.113 18 C -0.153 4.153 19 C -0.060 4.060 20 N -0.199 5.199 21 C -0.060 4.060 22 C -0.152 4.152 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.156 4.156 28 C -0.148 4.148 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.198 0.802 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.186 0.814 38 H 0.213 0.787 39 H 0.204 0.796 40 H 0.158 0.842 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.130 0.870 45 H 0.153 0.847 46 H 0.162 0.838 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.877 -14.292 -5.428 19.359 hybrid contribution -0.852 1.906 0.855 2.256 sum 11.025 -12.386 -4.573 17.201 Atomic orbital electron populations 1.69805 1.06387 1.24939 1.60862 1.25241 0.95794 0.99997 1.05484 0.85552 0.78196 0.81799 0.76791 1.22709 1.23500 1.19143 1.19287 0.91088 0.84475 1.37965 0.90281 1.42517 1.04986 1.00844 1.87677 1.20354 0.92965 0.87935 0.91640 0.91852 1.22135 0.98309 1.02915 0.93139 1.21155 0.93548 1.00543 0.83526 1.45824 1.11406 1.72959 1.05089 1.18693 0.87382 0.76276 0.84302 1.90773 1.16307 1.51631 1.87309 1.20412 0.94919 1.02457 0.93481 1.22664 0.91908 0.98088 1.02670 1.23354 1.02294 0.94011 0.86361 1.67648 1.13132 1.10811 1.28352 1.23159 0.88474 0.94677 0.99690 1.22441 1.02699 0.97822 0.92203 1.21053 0.96817 1.02305 0.92184 1.19950 0.98318 0.92797 0.96141 1.21136 0.98036 0.98393 0.95042 1.21293 0.98973 0.98561 0.97297 1.21308 1.00907 0.92356 1.01004 1.21381 0.98452 0.98687 0.96253 1.21302 0.98929 0.97440 0.97012 0.94920 0.80176 0.88448 0.91707 0.94297 0.92475 0.74665 0.81362 0.78702 0.79551 0.84168 0.88855 0.92449 0.88449 0.86972 0.84667 0.83770 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.35 13.06 21.65 0.28 -58.06 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.94 45.30 29.55 68.60 2.03 47.33 16 4 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 5 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.20 -9.63 7.90 84.03 0.66 -8.97 16 8 H 0.08 3.69 6.64 -2.91 -0.02 3.67 16 9 N -0.72 -32.16 4.14 -322.94 -1.34 -33.49 16 10 C 0.18 5.90 2.67 44.99 0.12 6.02 16 11 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 12 C -0.13 -3.39 4.73 30.59 0.14 -3.25 16 13 C 0.14 4.31 5.56 86.38 0.48 4.79 16 14 N -0.70 -18.16 5.51 -465.67 -2.57 -20.73 16 15 C 0.55 16.62 7.80 86.88 0.68 17.30 16 16 O -0.58 -23.31 16.45 -3.76 -0.06 -23.37 16 17 C -0.10 -2.37 5.91 -19.88 -0.12 -2.49 16 18 C -0.13 -2.11 9.62 22.63 0.22 -1.89 16 19 C 0.10 1.42 11.17 84.67 0.95 2.37 16 20 N -0.49 -9.25 10.34 -196.01 -2.03 -11.27 16 21 C 0.10 1.74 11.17 84.67 0.95 2.69 16 22 C -0.13 -2.90 9.68 22.63 0.22 -2.68 16 23 C -0.08 -2.50 4.75 29.85 0.14 -2.35 16 24 C -0.07 -2.34 4.95 -19.87 -0.10 -2.44 16 25 C -0.11 -4.10 9.32 22.27 0.21 -3.89 16 26 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 27 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 28 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 29 C -0.13 -3.49 9.70 22.27 0.22 -3.28 16 30 H 0.24 14.58 8.31 -92.70 -0.77 13.81 16 31 H 0.37 19.02 8.03 -92.71 -0.74 18.28 16 32 H 0.10 1.83 8.14 -2.38 -0.02 1.82 16 33 H 0.06 1.91 7.11 -2.39 -0.02 1.89 16 34 H 0.04 1.66 7.75 -2.39 -0.02 1.64 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.42 7.30 6.62 -92.71 -0.61 6.69 16 37 H 0.17 1.54 6.54 -2.91 -0.02 1.53 16 38 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.14 3.23 7.74 -2.91 -0.02 3.21 16 41 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 42 H 0.06 1.90 7.05 -2.39 -0.02 1.89 16 43 H 0.10 4.31 7.39 -2.91 -0.02 4.29 16 44 H 0.11 3.69 8.06 -2.92 -0.02 3.66 16 45 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 47 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -73.72 394.99 1.86 -71.86 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -0.36 Total: 40.86 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.90 Total: -13.12 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -5.65 Total: -123.56 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.37 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.72 1.86 -71.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278532593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.148 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds