Wall clock time and date at job start Tue Mar 31 2020 22:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 120.00319 * 2 1 4 4 H 1.48499 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 300.00199 * 3 2 1 6 6 H 1.48507 * 109.47110 * 59.99805 * 3 2 1 7 7 C 1.38810 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00114 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00021 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46870 * 299.99377 * 10 9 7 13 13 C 1.52996 * 109.47190 * 295.00152 * 12 10 9 14 14 N 1.46501 * 109.46867 * 179.97438 * 13 12 10 15 15 C 1.34780 * 119.99775 * 180.02562 * 14 13 12 16 16 O 1.21506 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.48175 * 119.99946 * 180.02562 * 15 14 13 18 18 C 1.39302 * 119.72217 * 179.97438 * 17 15 14 19 19 C 1.38596 * 119.05879 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48552 * 0.02562 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.25409 * 20 19 18 22 22 N 1.31532 * 120.90059 * 359.49177 * 21 20 19 23 23 C 1.52998 * 109.47373 * 59.99686 * 10 9 7 24 24 C 1.50694 * 109.47141 * 64.99844 * 23 10 9 25 25 C 1.38234 * 120.00404 * 269.72959 * 24 23 10 26 26 C 1.38235 * 120.00022 * 179.76738 * 25 24 23 27 27 C 1.38232 * 120.00295 * 0.50368 * 26 25 24 28 28 C 1.38236 * 119.99594 * 359.75080 * 27 26 25 29 29 C 1.38233 * 120.00341 * 359.97438 * 28 27 26 30 30 H 0.97002 * 119.99954 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99925 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46803 * 175.00286 * 12 10 9 33 33 H 1.09004 * 109.46933 * 55.00265 * 12 10 9 34 34 H 1.08997 * 109.47139 * 60.00339 * 13 12 10 35 35 H 1.08996 * 109.47421 * 300.00183 * 13 12 10 36 36 H 0.97001 * 120.00408 * 0.02562 * 14 13 12 37 37 H 1.07999 * 120.47505 * 0.02670 * 18 17 15 38 38 H 1.07991 * 120.75588 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.54967 * 179.74631 * 21 20 19 41 41 H 1.08997 * 109.47255 * 185.00421 * 23 10 9 42 42 H 1.08997 * 109.46838 * 304.99746 * 23 10 9 43 43 H 1.08000 * 119.99731 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.99852 * 180.22806 * 26 25 24 45 45 H 1.07995 * 120.00085 * 179.72427 * 27 26 25 46 46 H 1.08004 * 120.00049 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.00072 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 1.3495 -4.4853 0.0020 12 6 2.9384 -3.7384 -1.2470 13 6 2.0525 -3.7835 -2.4936 14 7 2.8957 -3.8611 -3.6892 15 6 2.3292 -3.9109 -4.9111 16 8 1.1193 -3.8910 -5.0212 17 6 3.1819 -3.9899 -6.1203 18 6 2.5903 -4.0416 -7.3804 19 6 3.4010 -4.1148 -8.5022 20 6 4.7757 -4.1342 -8.3244 21 6 5.2953 -4.0857 -7.0408 22 7 4.5029 -4.0117 -5.9936 23 6 2.9366 -3.7373 1.2516 24 6 2.0624 -3.7806 2.4782 25 6 1.6907 -2.6054 3.1039 26 6 0.8848 -2.6449 4.2264 27 6 0.4592 -3.8601 4.7293 28 6 0.8353 -5.0356 4.1067 29 6 1.6365 -4.9959 2.9809 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 3.5492 -4.6401 -1.2025 33 1 3.5859 -2.8628 -1.2928 34 1 1.4417 -2.8819 -2.5381 35 1 1.4050 -4.6591 -2.4478 36 1 3.8616 -3.8766 -3.6014 37 1 1.5153 -4.0241 -7.4820 38 1 2.9715 -4.1566 -9.4922 39 1 5.4351 -4.1911 -9.1778 40 1 6.3657 -4.1048 -6.8985 41 1 3.5476 -4.6390 1.2087 42 1 3.5841 -2.8617 1.2975 43 1 2.0271 -1.6561 2.7138 44 1 0.5913 -1.7265 4.7130 45 1 -0.1667 -3.8912 5.6088 46 1 0.5032 -5.9852 4.4998 47 1 1.9307 -5.9143 2.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278533427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:05 Heat of formation + Delta-G solvation = 29.829841 kcal Electronic energy + Delta-G solvation = -28132.524604 eV Core-core repulsion = 24280.050351 eV Total energy + Delta-G solvation = -3852.474252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63088 -38.92780 -38.68730 -36.53454 -34.44323 -32.84165 -32.42898 -31.67647 -30.88591 -30.27738 -29.07908 -27.07737 -24.89550 -24.07040 -23.69648 -22.68420 -21.94560 -20.68887 -20.63504 -19.47581 -18.10504 -17.07130 -16.83631 -16.19541 -16.08589 -15.51227 -15.26642 -15.04359 -14.95164 -14.55341 -14.34461 -14.11998 -13.79145 -13.64092 -13.40027 -13.19228 -12.91270 -12.83480 -12.73138 -12.35312 -12.18025 -11.63256 -11.42347 -11.31374 -10.96110 -10.87937 -10.72027 -10.44865 -10.34475 -10.33362 -10.22424 -10.21076 -9.75704 -9.63592 -9.52702 -9.42793 -8.92368 -8.66979 -8.31976 -8.04456 -6.93148 -5.74316 -3.02702 0.48949 0.97364 1.94355 2.02616 2.80314 3.28865 3.42360 3.48127 3.51066 3.78165 4.04607 4.39215 4.53641 4.60106 4.69050 4.73812 4.83913 5.21272 5.34824 5.36872 5.45537 5.48525 5.49927 5.55766 5.62623 5.70243 5.75641 5.85230 5.86912 6.03447 6.06396 6.15369 6.18886 6.27324 6.32909 6.41796 6.46568 6.56053 6.70244 6.73344 6.77904 6.86275 6.96973 7.01165 7.16102 7.39859 7.46625 7.65202 7.71563 7.82276 8.39079 8.42602 9.54896 10.12346 10.47314 11.47589 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002735 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.376829 B =10236.644331 C =11723.213893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.187 3.813 11 H 0.055 0.945 12 C -0.139 4.139 13 C 0.125 3.875 14 N -0.703 5.703 15 C 0.562 3.438 16 O -0.534 6.534 17 C 0.086 3.914 18 C -0.114 4.114 19 C -0.083 4.083 20 C -0.157 4.157 21 C 0.096 3.904 22 N -0.459 5.459 23 C -0.094 4.094 24 C -0.056 4.056 25 C -0.079 4.079 26 C -0.124 4.124 27 C -0.137 4.137 28 C -0.133 4.133 29 C -0.130 4.130 30 H 0.253 0.747 31 H 0.386 0.614 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.407 0.593 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.162 0.838 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 -11.718 -8.369 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.204 4.204 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.075 3.925 11 H 0.073 0.927 12 C -0.179 4.179 13 C 0.002 3.998 14 N -0.352 5.352 15 C 0.346 3.654 16 O -0.410 6.410 17 C -0.053 4.053 18 C -0.135 4.135 19 C -0.109 4.109 20 C -0.177 4.177 21 C -0.063 4.063 22 N -0.171 5.171 23 C -0.133 4.133 24 C -0.057 4.057 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.155 4.155 28 C -0.151 4.151 29 C -0.148 4.148 30 H 0.063 0.937 31 H 0.219 0.781 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.242 0.758 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.075 -11.509 -7.545 16.484 hybrid contribution 0.257 1.063 -0.904 1.419 sum 9.331 -10.446 -8.449 16.357 Atomic orbital electron populations 1.69661 1.04966 1.25331 1.57306 1.24662 0.95291 0.97294 1.03148 0.86320 0.78891 0.85037 0.77169 1.20649 1.22076 1.22017 1.19073 0.90828 0.83919 1.42518 0.91223 1.42379 1.05665 0.99580 1.87862 1.20061 0.92431 0.90020 0.90005 0.92661 1.22266 0.99029 1.01235 0.95382 1.21458 0.93314 1.02924 0.82091 1.45965 1.11342 1.72278 1.05654 1.17857 0.86971 0.77646 0.82925 1.90800 1.13507 1.50371 1.86356 1.21356 0.90271 0.99528 0.94099 1.22182 1.02511 0.96949 0.91862 1.21639 0.93604 0.96315 0.99293 1.22364 0.96156 1.00005 0.99138 1.22816 1.00064 0.95579 0.87843 1.67585 1.04269 1.10194 1.35039 1.21151 0.97315 1.01299 0.93580 1.19801 0.97632 0.92576 0.95645 1.21281 0.95999 0.99013 0.93433 1.21141 0.98543 0.97269 0.97241 1.20972 1.01233 0.92953 1.00326 1.20923 0.99698 0.97548 0.96931 1.20963 0.99595 0.97287 0.96949 0.93660 0.78075 0.93004 0.90793 0.89274 0.92397 0.75818 0.83347 0.84138 0.84343 0.82086 0.92697 0.90672 0.84878 0.86920 0.87264 0.87219 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 13.06 55.49 0.72 -26.16 16 2 C -0.01 -0.20 5.50 -17.44 -0.10 -0.30 16 3 Si 0.89 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 7 C -0.23 -5.77 7.90 -15.06 -0.12 -5.89 16 8 H 0.07 1.70 6.64 -52.48 -0.35 1.35 16 9 N -0.72 -16.12 4.14 -53.42 -0.22 -16.34 16 10 C 0.19 3.35 2.67 -67.93 -0.18 3.17 16 11 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 12 C -0.14 -2.25 4.73 -26.73 -0.13 -2.38 16 13 C 0.12 2.18 5.56 -4.04 -0.02 2.16 16 14 N -0.70 -11.15 5.55 -61.15 -0.34 -11.49 16 15 C 0.56 9.50 7.81 -12.18 -0.10 9.41 16 16 O -0.53 -10.72 16.32 5.36 0.09 -10.63 16 17 C 0.09 1.19 6.75 -83.01 -0.56 0.63 16 18 C -0.11 -1.32 9.63 -39.05 -0.38 -1.70 16 19 C -0.08 -0.68 10.17 -39.30 -0.40 -1.08 16 20 C -0.16 -1.15 10.11 -39.32 -0.40 -1.55 16 21 C 0.10 0.86 11.18 -17.56 -0.20 0.67 16 22 N -0.46 -5.66 9.54 -9.80 -0.09 -5.76 16 23 C -0.09 -1.57 4.75 -27.89 -0.13 -1.70 16 24 C -0.06 -0.99 4.95 -104.63 -0.52 -1.51 16 25 C -0.08 -1.51 9.32 -39.58 -0.37 -1.88 16 26 C -0.12 -2.16 10.05 -39.58 -0.40 -2.55 16 27 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 28 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 29 C -0.13 -2.04 9.70 -39.58 -0.38 -2.42 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.39 9.80 8.03 -40.82 -0.33 9.47 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 34 H 0.09 1.93 7.75 -51.93 -0.40 1.52 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 5.68 7.80 -40.82 -0.32 5.36 16 37 H 0.15 1.70 7.64 -52.49 -0.40 1.29 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 40 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.07 1.36 7.05 -51.93 -0.37 0.99 16 43 H 0.13 2.83 7.39 -52.49 -0.39 2.45 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -31.28 397.02 -10.75 -42.04 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -6.70 Total: 17.47 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -5.17 Total: -11.84 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.07 Total: -59.75 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.28 -10.75 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278533427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.866 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds