Wall clock time and date at job start Tue Mar 31 2020 22:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86801 * 120.00319 * 2 1 4 4 H 1.48499 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 300.00199 * 3 2 1 6 6 H 1.48507 * 109.47110 * 59.99805 * 3 2 1 7 7 C 1.38810 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00114 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00021 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46870 * 299.99377 * 10 9 7 13 13 C 1.52996 * 109.47190 * 295.00152 * 12 10 9 14 14 N 1.46501 * 109.46867 * 179.97438 * 13 12 10 15 15 C 1.34780 * 119.99775 * 180.02562 * 14 13 12 16 16 O 1.21506 * 120.00220 * 0.02562 * 15 14 13 17 17 C 1.48175 * 119.99946 * 180.02562 * 15 14 13 18 18 C 1.39302 * 119.72217 * 179.97438 * 17 15 14 19 19 C 1.38596 * 119.05879 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48552 * 0.02562 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.25409 * 20 19 18 22 22 N 1.31532 * 120.90059 * 359.49177 * 21 20 19 23 23 C 1.52998 * 109.47373 * 59.99686 * 10 9 7 24 24 C 1.50694 * 109.47141 * 64.99844 * 23 10 9 25 25 C 1.38234 * 120.00404 * 269.72959 * 24 23 10 26 26 C 1.38235 * 120.00022 * 179.76738 * 25 24 23 27 27 C 1.38232 * 120.00295 * 0.50368 * 26 25 24 28 28 C 1.38236 * 119.99594 * 359.75080 * 27 26 25 29 29 C 1.38233 * 120.00341 * 359.97438 * 28 27 26 30 30 H 0.97002 * 119.99954 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99925 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46803 * 175.00286 * 12 10 9 33 33 H 1.09004 * 109.46933 * 55.00265 * 12 10 9 34 34 H 1.08997 * 109.47139 * 60.00339 * 13 12 10 35 35 H 1.08996 * 109.47421 * 300.00183 * 13 12 10 36 36 H 0.97001 * 120.00408 * 0.02562 * 14 13 12 37 37 H 1.07999 * 120.47505 * 0.02670 * 18 17 15 38 38 H 1.07991 * 120.75588 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.54967 * 179.74631 * 21 20 19 41 41 H 1.08997 * 109.47255 * 185.00421 * 23 10 9 42 42 H 1.08997 * 109.46838 * 304.99746 * 23 10 9 43 43 H 1.08000 * 119.99731 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.99852 * 180.22806 * 26 25 24 45 45 H 1.07995 * 120.00085 * 179.72427 * 27 26 25 46 46 H 1.08004 * 120.00049 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.00072 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 1.3495 -4.4853 0.0020 12 6 2.9384 -3.7384 -1.2470 13 6 2.0525 -3.7835 -2.4936 14 7 2.8957 -3.8611 -3.6892 15 6 2.3292 -3.9109 -4.9111 16 8 1.1193 -3.8910 -5.0212 17 6 3.1819 -3.9899 -6.1203 18 6 2.5903 -4.0416 -7.3804 19 6 3.4010 -4.1148 -8.5022 20 6 4.7757 -4.1342 -8.3244 21 6 5.2953 -4.0857 -7.0408 22 7 4.5029 -4.0117 -5.9936 23 6 2.9366 -3.7373 1.2516 24 6 2.0624 -3.7806 2.4782 25 6 1.6907 -2.6054 3.1039 26 6 0.8848 -2.6449 4.2264 27 6 0.4592 -3.8601 4.7293 28 6 0.8353 -5.0356 4.1067 29 6 1.6365 -4.9959 2.9809 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 0.0005 32 1 3.5492 -4.6401 -1.2025 33 1 3.5859 -2.8628 -1.2928 34 1 1.4417 -2.8819 -2.5381 35 1 1.4050 -4.6591 -2.4478 36 1 3.8616 -3.8766 -3.6014 37 1 1.5153 -4.0241 -7.4820 38 1 2.9715 -4.1566 -9.4922 39 1 5.4351 -4.1911 -9.1778 40 1 6.3657 -4.1048 -6.8985 41 1 3.5476 -4.6390 1.2087 42 1 3.5841 -2.8617 1.2975 43 1 2.0271 -1.6561 2.7138 44 1 0.5913 -1.7265 4.7130 45 1 -0.1667 -3.8912 5.6088 46 1 0.5032 -5.9852 4.4998 47 1 1.9307 -5.9143 2.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278533427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:04 Heat of formation + Delta-G solvation = 10.455632 kcal Electronic energy + Delta-G solvation = -28133.364732 eV Core-core repulsion = 24280.050351 eV Total energy + Delta-G solvation = -3853.314381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57942 -40.20099 -39.90579 -38.05384 -35.89770 -34.27623 -33.59185 -32.63607 -32.21134 -31.56627 -30.74201 -28.48987 -26.11306 -25.77292 -24.49214 -23.92478 -23.24398 -22.04653 -21.85052 -21.00066 -19.32547 -18.78328 -17.77295 -17.42814 -17.08034 -16.91040 -16.52438 -16.40772 -16.00665 -15.90904 -15.76827 -15.54968 -15.13769 -14.88290 -14.80449 -14.31405 -14.18546 -14.09240 -14.03990 -13.77499 -13.10633 -13.02144 -12.91070 -12.88827 -12.78072 -12.49645 -12.30018 -12.15642 -11.73980 -11.68099 -11.57851 -11.43965 -11.24450 -10.95418 -10.86087 -10.54354 -10.31713 -10.00132 -9.62646 -9.39262 -8.84633 -7.83351 -5.07885 -0.36049 0.26559 0.65506 0.72329 1.43947 1.45998 1.53011 1.70523 2.09858 2.60398 2.88077 3.07605 3.15452 3.51882 3.83184 3.93170 3.97786 4.00555 4.05744 4.10452 4.17203 4.22115 4.31467 4.38934 4.44741 4.51197 4.61614 4.66833 4.77419 4.78759 4.84268 4.86779 4.98235 5.07547 5.11191 5.15261 5.17837 5.27396 5.37852 5.43349 5.45871 5.52799 5.64695 5.65349 5.73929 5.82528 6.05285 6.34905 6.37541 6.40948 6.81459 7.13609 7.44733 8.21046 8.43490 9.40600 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002735 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.376829 B =10236.644331 C =11723.213893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.307 1.307 6 H -0.301 1.301 7 C -0.196 4.196 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.182 3.818 11 H 0.065 0.935 12 C -0.124 4.124 13 C 0.135 3.865 14 N -0.696 5.696 15 C 0.556 3.444 16 O -0.580 6.580 17 C 0.052 3.948 18 C -0.127 4.127 19 C -0.079 4.079 20 C -0.134 4.134 21 C 0.089 3.911 22 N -0.479 5.479 23 C -0.085 4.085 24 C -0.072 4.072 25 C -0.108 4.108 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.129 4.129 29 C -0.129 4.129 30 H 0.242 0.758 31 H 0.368 0.632 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.137 0.863 38 H 0.175 0.825 39 H 0.183 0.817 40 H 0.195 0.805 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.137 0.863 46 H 0.145 0.855 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 -14.656 -9.540 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.235 1.235 6 H -0.229 1.229 7 C -0.328 4.328 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.073 3.927 11 H 0.083 0.917 12 C -0.164 4.164 13 C 0.012 3.988 14 N -0.346 5.346 15 C 0.342 3.658 16 O -0.460 6.460 17 C -0.085 4.085 18 C -0.148 4.148 19 C -0.104 4.104 20 C -0.154 4.154 21 C -0.071 4.071 22 N -0.191 5.191 23 C -0.124 4.124 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.155 4.155 28 C -0.147 4.147 29 C -0.147 4.147 30 H 0.051 0.949 31 H 0.199 0.801 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.155 0.845 38 H 0.193 0.807 39 H 0.201 0.799 40 H 0.212 0.788 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.131 0.869 45 H 0.155 0.845 46 H 0.163 0.837 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.088 -14.487 -8.704 20.778 hybrid contribution -0.546 1.814 -0.605 1.989 sum 11.542 -12.672 -9.309 19.505 Atomic orbital electron populations 1.69805 1.06319 1.24896 1.60893 1.25235 0.95849 0.99966 1.05439 0.85476 0.78788 0.82112 0.75980 1.18889 1.23504 1.22863 1.19316 0.91026 0.84558 1.37924 0.90542 1.42502 1.04997 1.00790 1.87649 1.20339 0.92914 0.88031 0.91450 0.91685 1.22121 0.98315 1.02551 0.93423 1.21171 0.93482 1.00548 0.83602 1.45852 1.11641 1.71986 1.05106 1.18483 0.86943 0.76349 0.84064 1.90755 1.15571 1.52489 1.87143 1.20912 0.90940 1.03445 0.93167 1.22269 1.02598 0.97581 0.92382 1.22059 0.93979 0.94861 0.99514 1.22880 0.96163 0.96450 0.99865 1.23512 1.01250 0.94445 0.87896 1.67498 1.03588 1.11061 1.36968 1.21044 0.96845 1.02214 0.92284 1.19929 0.98312 0.92895 0.96049 1.21128 0.98063 0.98330 0.95081 1.21288 0.98922 0.98608 0.97235 1.21308 1.00871 0.92300 1.01003 1.21379 0.98397 0.98735 0.96183 1.21298 0.98957 0.97377 0.97058 0.94857 0.80069 0.88921 0.92141 0.94164 0.92333 0.74566 0.84465 0.80741 0.79923 0.78799 0.89004 0.92550 0.88500 0.86916 0.84550 0.83689 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.54 13.06 21.65 0.28 -59.26 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.94 46.69 29.55 68.60 2.03 48.72 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 7 C -0.20 -10.09 7.90 84.03 0.66 -9.42 16 8 H 0.08 3.80 6.64 -2.90 -0.02 3.78 16 9 N -0.72 -33.73 4.14 -322.92 -1.34 -35.07 16 10 C 0.18 6.46 2.67 44.99 0.12 6.58 16 11 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 12 C -0.12 -3.91 4.73 30.59 0.14 -3.77 16 13 C 0.14 4.88 5.56 86.38 0.48 5.36 16 14 N -0.70 -22.61 5.55 -465.67 -2.58 -25.20 16 15 C 0.56 19.68 7.81 86.88 0.68 20.35 16 16 O -0.58 -24.90 16.32 -3.74 -0.06 -24.96 16 17 C 0.05 1.45 6.75 41.91 0.28 1.74 16 18 C -0.13 -2.91 9.63 22.61 0.22 -2.69 16 19 C -0.08 -1.07 10.17 22.45 0.23 -0.84 16 20 C -0.13 -1.37 10.11 22.44 0.23 -1.15 16 21 C 0.09 1.30 11.18 84.81 0.95 2.24 16 22 N -0.48 -11.20 9.54 -184.91 -1.76 -12.96 16 23 C -0.08 -2.71 4.75 29.85 0.14 -2.57 16 24 C -0.07 -2.46 4.95 -19.87 -0.10 -2.56 16 25 C -0.11 -4.24 9.32 22.27 0.21 -4.04 16 26 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 27 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 28 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 29 C -0.13 -3.68 9.70 22.27 0.22 -3.46 16 30 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.37 19.72 8.03 -92.71 -0.74 18.97 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.09 7.11 -2.38 -0.02 2.07 16 34 H 0.04 1.85 7.75 -2.39 -0.02 1.83 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.42 11.55 7.80 -92.71 -0.72 10.83 16 37 H 0.14 3.32 7.64 -2.91 -0.02 3.30 16 38 H 0.18 1.13 8.06 -2.92 -0.02 1.10 16 39 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 40 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 42 H 0.06 2.01 7.05 -2.39 -0.02 2.00 16 43 H 0.10 4.43 7.39 -2.91 -0.02 4.41 16 44 H 0.11 3.81 8.06 -2.91 -0.02 3.78 16 45 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 46 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 47 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -75.27 397.02 1.69 -73.58 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -0.47 Total: 44.82 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.60 Total: -9.68 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -5.40 Total: -132.48 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.06 Total: -24.96 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.27 1.69 -73.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278533427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.036 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds