Wall clock time and date at job start Tue Mar 31 2020 23:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39048 * 121.01815 * 2 1 4 4 C 1.47765 * 120.26298 * 359.97438 * 3 2 1 5 5 O 1.21561 * 120.00257 * 354.07755 * 4 3 2 6 6 N 1.34779 * 119.99791 * 174.08217 * 4 3 2 7 7 C 1.46492 * 119.99999 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47236 * 185.01435 * 7 6 4 9 9 N 1.46499 * 112.90667 * 293.74622 * 8 7 6 10 10 C 1.36942 * 120.00005 * 305.90324 * 9 8 7 11 11 H 1.08008 * 119.99933 * 3.46200 * 10 9 8 12 12 C 1.38812 * 120.00060 * 183.47242 * 10 9 8 13 13 N 1.31614 * 119.99867 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47145 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47064 * 119.99948 * 14 12 10 17 17 H 1.48495 * 109.47219 * 239.99719 * 14 12 10 18 18 C 1.53771 * 113.61377 * 64.99406 * 8 7 6 19 19 C 1.53785 * 87.08230 * 139.98287 * 18 8 7 20 20 C 1.53776 * 113.61351 * 162.49318 * 8 7 6 21 21 C 1.40560 * 119.46906 * 180.27543 * 3 2 1 22 22 N 1.30824 * 121.53456 * 359.48203 * 21 3 2 23 23 C 1.33794 * 121.71984 * 0.51084 * 22 21 3 24 24 C 1.40528 * 120.82553 * 179.74323 * 23 22 21 25 25 C 1.36127 * 119.81585 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.09661 * 359.97438 * 25 24 23 27 27 C 1.36141 * 120.83394 * 0.02562 * 26 25 24 28 28 C 1.40496 * 121.02256 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47140 * 83.68955 * 1 2 3 30 30 H 1.09000 * 109.46868 * 203.69023 * 1 2 3 31 31 H 1.08999 * 109.47265 * 323.68909 * 1 2 3 32 32 H 0.97000 * 119.99627 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.47342 * 65.01429 * 7 6 4 34 34 H 1.09002 * 109.47650 * 305.01585 * 7 6 4 35 35 H 0.96996 * 120.00514 * 125.89864 * 9 8 7 36 36 H 0.97004 * 119.99850 * 180.02562 * 13 12 10 37 37 H 1.09005 * 113.61541 * 25.43935 * 18 8 7 38 38 H 1.09001 * 113.69676 * 254.54164 * 18 8 7 39 39 H 1.08998 * 113.61564 * 89.11547 * 19 18 8 40 40 H 1.09002 * 113.61419 * 220.02506 * 19 18 8 41 41 H 1.09003 * 113.61471 * 105.47209 * 20 8 7 42 42 H 1.08994 * 113.61920 * 334.57021 * 20 8 7 43 43 H 1.07999 * 119.23258 * 179.74699 * 21 3 2 44 44 H 1.08004 * 120.09485 * 0.04233 * 24 23 22 45 45 H 1.08004 * 119.45461 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.58570 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.19317 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5135 2.4875 -0.0006 5 8 0.3032 2.5174 -0.1097 6 7 2.2079 3.6364 0.1198 7 6 1.5041 4.9212 0.1187 8 6 2.5240 6.0615 0.1417 9 7 3.2911 6.1154 1.3886 10 6 2.6392 6.1722 2.5916 11 1 1.5609 6.1209 2.6244 12 6 3.3644 6.2959 3.7688 13 7 4.6784 6.3582 3.7288 14 14 2.4751 6.3741 5.4097 15 1 1.0102 6.2852 5.1835 16 1 2.9140 5.2423 6.2650 17 1 2.7942 7.6576 6.0850 18 6 3.3971 6.1326 -1.1222 19 6 3.2555 7.6616 -1.0388 20 6 1.9393 7.4195 -0.2811 21 6 3.6286 1.1537 -0.0059 22 7 4.2825 0.0206 -0.0013 23 6 3.6484 -1.1576 -0.0010 24 6 4.3696 -2.3636 -0.0014 25 6 3.7034 -3.5507 -0.0016 26 6 2.3106 -3.5943 -0.0008 27 6 1.5766 -2.4478 -0.0003 28 6 2.2311 -1.2040 -0.0005 29 1 -0.3633 0.1130 -1.0214 30 1 -0.3633 -0.9411 0.4129 31 1 -0.3634 0.8281 0.6085 32 1 3.1737 3.6125 0.2071 33 1 0.8660 4.9867 0.9999 34 1 0.8919 4.9994 -0.7798 35 1 4.2607 6.1108 1.3622 36 1 5.1852 6.4443 4.5514 37 1 2.9257 5.6979 -2.0036 38 1 4.4172 5.7797 -0.9703 39 1 4.0261 8.1392 -0.4337 40 1 3.1193 8.1410 -2.0082 41 1 1.7822 8.1055 0.5513 42 1 1.0694 7.3366 -0.9325 43 1 4.1813 2.0815 -0.0100 44 1 5.4496 -2.3488 -0.0013 45 1 4.2636 -4.4741 -0.0023 46 1 1.8071 -4.5497 -0.0005 47 1 0.4976 -2.4937 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280493923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:52 Heat of formation + Delta-G solvation = 52.697855 kcal Electronic energy + Delta-G solvation = -29039.522091 eV Core-core repulsion = 25188.039470 eV Total energy + Delta-G solvation = -3851.482621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18029 -39.54432 -38.51678 -36.97453 -34.80813 -33.92401 -33.30017 -31.04485 -30.48292 -30.02150 -28.29538 -26.95856 -25.25448 -24.41271 -24.05559 -23.70796 -21.77699 -21.21204 -20.57579 -18.64588 -18.02050 -17.83971 -17.29556 -16.90275 -15.84803 -15.50816 -15.30412 -14.94520 -14.61306 -14.53623 -14.30194 -14.22888 -14.05782 -13.82841 -13.33217 -13.21617 -13.07079 -12.84033 -12.73148 -12.21854 -12.06171 -11.95584 -11.89372 -11.71172 -11.65227 -11.33192 -11.05941 -10.87059 -10.40515 -10.28890 -10.22602 -10.10021 -9.86326 -9.69807 -9.52265 -9.29081 -8.98568 -8.92576 -8.59382 -8.32705 -7.07907 -5.85116 -3.15079 0.12337 0.50195 1.72735 2.50509 3.31135 3.39451 3.46456 3.47676 3.48177 3.99210 4.10460 4.33999 4.51399 4.55548 4.57204 4.67553 4.86414 4.91439 5.06232 5.16616 5.22442 5.24923 5.26559 5.34215 5.43808 5.50742 5.57206 5.63683 5.72805 5.74911 5.81835 5.86238 5.99431 6.04970 6.11995 6.16343 6.18249 6.31595 6.32296 6.35743 6.37384 6.47687 6.62292 6.70246 6.83817 6.94719 7.02808 7.68104 7.76239 7.87044 8.32884 8.48655 9.45014 9.97810 10.32867 11.36777 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.003137 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.489629 B = 8922.605963 C = 9705.822356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.044 3.956 3 C -0.196 4.196 4 C 0.559 3.441 5 O -0.544 6.544 6 N -0.696 5.696 7 C 0.124 3.876 8 C 0.174 3.826 9 N -0.700 5.700 10 C -0.237 4.237 11 H 0.072 0.928 12 C -0.007 4.007 13 N -0.929 5.929 14 Si 0.903 3.097 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.291 1.291 18 C -0.146 4.146 19 C -0.130 4.130 20 C -0.155 4.155 21 C 0.172 3.828 22 N -0.482 5.482 23 C 0.144 3.856 24 C -0.098 4.098 25 C -0.095 4.095 26 C -0.126 4.126 27 C -0.086 4.086 28 C -0.115 4.115 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.164 0.836 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 -15.674 -11.628 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.035 3.965 3 C -0.201 4.201 4 C 0.345 3.655 5 O -0.424 6.424 6 N -0.345 5.345 7 C -0.001 4.001 8 C 0.081 3.919 9 N -0.340 5.340 10 C -0.368 4.368 11 H 0.090 0.910 12 C -0.204 4.204 13 N -0.577 5.577 14 Si 0.734 3.266 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.218 1.218 18 C -0.184 4.184 19 C -0.167 4.167 20 C -0.196 4.196 21 C -0.002 4.002 22 N -0.190 5.190 23 C 0.023 3.977 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.144 4.144 27 C -0.105 4.105 28 C -0.117 4.117 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.181 0.819 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.647 -15.709 -11.523 19.821 hybrid contribution -0.386 0.162 1.156 1.229 sum -4.033 -15.547 -10.368 19.117 Atomic orbital electron populations 1.21176 0.88796 1.03812 1.04338 1.20654 0.97262 0.90497 0.88104 1.20890 0.95143 0.94546 1.09513 1.17880 0.86896 0.83432 0.77302 1.90685 1.13457 1.87130 1.51116 1.45712 1.11195 1.05630 1.71986 1.21793 0.95355 0.81799 1.01173 1.20802 0.91756 0.91928 0.87413 1.42117 1.05200 1.87583 0.99124 1.19149 0.91462 1.42465 0.83696 0.91024 1.24708 0.95448 1.02514 0.97716 1.69656 1.04343 1.56917 1.26782 0.86180 0.78802 0.77199 0.84410 1.20489 1.21900 1.21837 1.23192 1.00221 0.97113 0.97829 1.22642 0.98924 0.95801 0.99360 1.23436 0.96129 1.00102 0.99915 1.23107 0.90277 0.96635 0.90153 1.67971 1.39462 0.97431 1.14125 1.19024 0.89599 0.92689 0.96411 1.20836 1.00560 0.90107 1.00178 1.20958 0.94512 0.97977 0.98058 1.20913 0.94116 0.98489 1.00872 1.21106 1.00285 0.91045 0.98021 1.18726 0.94035 0.94062 1.04849 0.89635 0.91793 0.87510 0.76282 0.91201 0.92125 0.77787 0.93496 0.90410 0.91613 0.90065 0.92726 0.90802 0.91428 0.81926 0.84524 0.85246 0.85446 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.49 36.01 0.31 -1.21 16 2 C 0.04 0.60 5.99 -103.47 -0.62 -0.02 16 3 C -0.20 -2.94 5.89 -104.83 -0.62 -3.56 16 4 C 0.56 9.32 7.72 -12.36 -0.10 9.22 16 5 O -0.54 -10.03 13.44 5.31 0.07 -9.96 16 6 N -0.70 -11.45 5.37 -61.28 -0.33 -11.78 16 7 C 0.12 2.18 4.91 -4.04 -0.02 2.16 16 8 C 0.17 3.10 0.81 -131.01 -0.11 3.00 16 9 N -0.70 -15.64 5.23 -46.48 -0.24 -15.89 16 10 C -0.24 -6.09 9.42 -15.06 -0.14 -6.24 16 11 H 0.07 1.85 6.96 -52.48 -0.37 1.49 16 12 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 13 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 14 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 C -0.15 -2.17 7.16 -25.92 -0.19 -2.35 16 19 C -0.13 -1.98 7.99 -25.92 -0.21 -2.19 16 20 C -0.15 -2.59 7.39 -25.92 -0.19 -2.78 16 21 C 0.17 2.48 10.67 -17.11 -0.18 2.30 16 22 N -0.48 -7.19 10.30 -10.68 -0.11 -7.30 16 23 C 0.14 1.97 6.61 -84.79 -0.56 1.41 16 24 C -0.10 -1.08 9.97 -39.48 -0.39 -1.47 16 25 C -0.10 -0.81 9.94 -39.93 -0.40 -1.21 16 26 C -0.13 -1.05 9.96 -39.92 -0.40 -1.45 16 27 C -0.09 -0.85 9.32 -39.46 -0.37 -1.22 16 28 C -0.11 -1.48 5.74 -106.81 -0.61 -2.09 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.60 6.21 -51.93 -0.32 0.28 16 31 H 0.11 1.54 5.92 -51.93 -0.31 1.23 16 32 H 0.40 6.28 6.49 -40.82 -0.26 6.02 16 33 H 0.07 1.41 7.03 -51.93 -0.36 1.05 16 34 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.39 9.29 7.83 -40.82 -0.32 8.97 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.07 0.98 8.10 -51.93 -0.42 0.55 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.00 8.03 -51.93 -0.42 0.58 16 43 H 0.16 2.08 6.42 -52.49 -0.34 1.74 16 44 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 45 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -30.68 382.24 -10.42 -41.10 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -6.38 Total: 15.02 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -4.89 Total: -7.99 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.04 Total: -60.90 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.68 -10.42 -41.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280493923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.793 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds