Wall clock time and date at job start Tue Mar 31 2020 23:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39048 * 121.01815 * 2 1 4 4 C 1.47765 * 120.26298 * 359.97438 * 3 2 1 5 5 O 1.21561 * 120.00257 * 354.07755 * 4 3 2 6 6 N 1.34779 * 119.99791 * 174.08217 * 4 3 2 7 7 C 1.46492 * 119.99999 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.47236 * 185.01435 * 7 6 4 9 9 N 1.46499 * 112.90667 * 293.74622 * 8 7 6 10 10 C 1.36942 * 120.00005 * 305.90324 * 9 8 7 11 11 H 1.08008 * 119.99933 * 3.46200 * 10 9 8 12 12 C 1.38812 * 120.00060 * 183.47242 * 10 9 8 13 13 N 1.31614 * 119.99867 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99980 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47145 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47064 * 119.99948 * 14 12 10 17 17 H 1.48495 * 109.47219 * 239.99719 * 14 12 10 18 18 C 1.53771 * 113.61377 * 64.99406 * 8 7 6 19 19 C 1.53785 * 87.08230 * 139.98287 * 18 8 7 20 20 C 1.53776 * 113.61351 * 162.49318 * 8 7 6 21 21 C 1.40560 * 119.46906 * 180.27543 * 3 2 1 22 22 N 1.30824 * 121.53456 * 359.48203 * 21 3 2 23 23 C 1.33794 * 121.71984 * 0.51084 * 22 21 3 24 24 C 1.40528 * 120.82553 * 179.74323 * 23 22 21 25 25 C 1.36127 * 119.81585 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.09661 * 359.97438 * 25 24 23 27 27 C 1.36141 * 120.83394 * 0.02562 * 26 25 24 28 28 C 1.40496 * 121.02256 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47140 * 83.68955 * 1 2 3 30 30 H 1.09000 * 109.46868 * 203.69023 * 1 2 3 31 31 H 1.08999 * 109.47265 * 323.68909 * 1 2 3 32 32 H 0.97000 * 119.99627 * 359.97438 * 6 4 3 33 33 H 1.09000 * 109.47342 * 65.01429 * 7 6 4 34 34 H 1.09002 * 109.47650 * 305.01585 * 7 6 4 35 35 H 0.96996 * 120.00514 * 125.89864 * 9 8 7 36 36 H 0.97004 * 119.99850 * 180.02562 * 13 12 10 37 37 H 1.09005 * 113.61541 * 25.43935 * 18 8 7 38 38 H 1.09001 * 113.69676 * 254.54164 * 18 8 7 39 39 H 1.08998 * 113.61564 * 89.11547 * 19 18 8 40 40 H 1.09002 * 113.61419 * 220.02506 * 19 18 8 41 41 H 1.09003 * 113.61471 * 105.47209 * 20 8 7 42 42 H 1.08994 * 113.61920 * 334.57021 * 20 8 7 43 43 H 1.07999 * 119.23258 * 179.74699 * 21 3 2 44 44 H 1.08004 * 120.09485 * 0.04233 * 24 23 22 45 45 H 1.08004 * 119.45461 * 179.97438 * 25 24 23 46 46 H 1.07995 * 119.58570 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.19317 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5135 2.4875 -0.0006 5 8 0.3032 2.5174 -0.1097 6 7 2.2079 3.6364 0.1198 7 6 1.5041 4.9212 0.1187 8 6 2.5240 6.0615 0.1417 9 7 3.2911 6.1154 1.3886 10 6 2.6392 6.1722 2.5916 11 1 1.5609 6.1209 2.6244 12 6 3.3644 6.2959 3.7688 13 7 4.6784 6.3582 3.7288 14 14 2.4751 6.3741 5.4097 15 1 1.0102 6.2852 5.1835 16 1 2.9140 5.2423 6.2650 17 1 2.7942 7.6576 6.0850 18 6 3.3971 6.1326 -1.1222 19 6 3.2555 7.6616 -1.0388 20 6 1.9393 7.4195 -0.2811 21 6 3.6286 1.1537 -0.0059 22 7 4.2825 0.0206 -0.0013 23 6 3.6484 -1.1576 -0.0010 24 6 4.3696 -2.3636 -0.0014 25 6 3.7034 -3.5507 -0.0016 26 6 2.3106 -3.5943 -0.0008 27 6 1.5766 -2.4478 -0.0003 28 6 2.2311 -1.2040 -0.0005 29 1 -0.3633 0.1130 -1.0214 30 1 -0.3633 -0.9411 0.4129 31 1 -0.3634 0.8281 0.6085 32 1 3.1737 3.6125 0.2071 33 1 0.8660 4.9867 0.9999 34 1 0.8919 4.9994 -0.7798 35 1 4.2607 6.1108 1.3622 36 1 5.1852 6.4443 4.5514 37 1 2.9257 5.6979 -2.0036 38 1 4.4172 5.7797 -0.9703 39 1 4.0261 8.1392 -0.4337 40 1 3.1193 8.1410 -2.0082 41 1 1.7822 8.1055 0.5513 42 1 1.0694 7.3366 -0.9325 43 1 4.1813 2.0815 -0.0100 44 1 5.4496 -2.3488 -0.0013 45 1 4.2636 -4.4741 -0.0023 46 1 1.8071 -4.5497 -0.0005 47 1 0.4976 -2.4937 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280493923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:51 Heat of formation + Delta-G solvation = 34.039372 kcal Electronic energy + Delta-G solvation = -29040.331183 eV Core-core repulsion = 25188.039470 eV Total energy + Delta-G solvation = -3852.291713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17244 -40.83553 -39.83728 -37.89260 -35.89004 -35.27359 -35.10772 -32.18578 -31.72515 -31.30348 -29.39762 -28.23788 -26.65779 -25.89665 -25.17452 -24.86206 -23.10416 -22.19077 -21.75083 -19.91515 -19.33954 -19.06161 -18.82072 -18.06743 -16.94719 -16.81782 -16.54711 -16.32961 -15.94267 -15.77503 -15.39893 -15.36930 -15.24748 -14.98838 -14.83349 -14.51976 -14.33678 -13.96656 -13.83370 -13.55498 -13.16239 -13.09780 -12.97077 -12.94207 -12.75920 -12.72820 -12.62042 -12.42616 -12.11377 -11.98565 -11.57614 -11.42245 -11.24060 -11.04343 -10.93110 -10.79278 -10.43374 -10.04649 -9.79947 -9.23543 -8.99482 -7.94271 -5.20793 -0.80863 -0.43617 0.82726 1.42744 1.45317 1.52081 1.52743 2.13534 2.27475 2.53832 3.03433 3.15567 3.38155 3.46054 3.57126 3.60814 3.75319 3.78884 3.81913 3.92902 3.98810 4.08125 4.20152 4.24722 4.31390 4.41144 4.43663 4.56780 4.64402 4.70062 4.84651 4.87847 4.92403 4.93076 4.97015 4.99667 5.04722 5.13244 5.19472 5.32519 5.39608 5.42419 5.43244 5.47706 5.52460 5.62300 5.71807 5.85160 6.29429 6.54416 6.76069 7.17447 7.36362 8.09883 8.33266 9.28366 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.003137 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.489629 B = 8922.605963 C = 9705.822356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.042 3.958 3 C -0.219 4.219 4 C 0.559 3.441 5 O -0.566 6.566 6 N -0.696 5.696 7 C 0.134 3.866 8 C 0.160 3.840 9 N -0.706 5.706 10 C -0.219 4.219 11 H 0.067 0.933 12 C -0.066 4.066 13 N -0.962 5.962 14 Si 0.954 3.046 15 H -0.273 1.273 16 H -0.299 1.299 17 H -0.294 1.294 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.152 4.152 21 C 0.162 3.838 22 N -0.502 5.502 23 C 0.118 3.882 24 C -0.121 4.121 25 C -0.077 4.077 26 C -0.115 4.115 27 C -0.093 4.093 28 C -0.130 4.130 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.405 0.595 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.378 0.622 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.094 0.906 43 H 0.168 0.832 44 H 0.142 0.858 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -18.460 -13.219 23.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.033 3.967 3 C -0.225 4.225 4 C 0.347 3.653 5 O -0.448 6.448 6 N -0.345 5.345 7 C 0.008 3.992 8 C 0.068 3.932 9 N -0.345 5.345 10 C -0.351 4.351 11 H 0.085 0.915 12 C -0.259 4.259 13 N -0.612 5.612 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.226 1.226 17 H -0.221 1.221 18 C -0.167 4.167 19 C -0.160 4.160 20 C -0.193 4.193 21 C -0.012 4.012 22 N -0.210 5.210 23 C -0.002 4.002 24 C -0.140 4.140 25 C -0.096 4.096 26 C -0.132 4.132 27 C -0.112 4.112 28 C -0.132 4.132 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.241 0.759 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.211 0.789 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.185 0.815 44 H 0.160 0.840 45 H 0.184 0.816 46 H 0.184 0.816 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.699 -18.497 -13.151 23.177 hybrid contribution -0.126 0.818 1.564 1.770 sum -4.825 -17.679 -11.587 21.681 Atomic orbital electron populations 1.21135 0.87732 1.04319 1.04332 1.20952 0.98100 0.90599 0.87039 1.20775 0.95406 0.94130 1.12177 1.18146 0.86684 0.83961 0.76512 1.90667 1.14317 1.87539 1.52230 1.45690 1.11293 1.05398 1.72119 1.21628 0.94967 0.82191 1.00412 1.21101 0.92547 0.92623 0.86927 1.42164 1.04930 1.87508 0.99910 1.19332 0.91286 1.39453 0.84984 0.91472 1.25293 0.96070 1.04193 1.00325 1.69773 1.05322 1.59403 1.26744 0.85352 0.78186 0.76523 0.81435 1.19773 1.22630 1.22134 1.23146 0.99818 0.96971 0.96773 1.22569 0.97125 0.96104 1.00191 1.23429 0.98026 0.98146 0.99682 1.23151 0.90245 0.96994 0.90812 1.67959 1.40112 0.98072 1.14888 1.19495 0.90564 0.93084 0.97064 1.21064 1.01125 0.90133 1.01665 1.21446 0.95074 0.98344 0.94759 1.21419 0.94048 0.99550 0.98202 1.21430 1.01666 0.90247 0.97810 1.18943 0.93845 0.94945 1.05445 0.89062 0.88807 0.90064 0.75932 0.94475 0.90410 0.78884 0.94240 0.87763 0.91579 0.92172 0.89663 0.93601 0.88744 0.81488 0.83982 0.81612 0.81553 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.49 71.24 0.60 -2.19 16 2 C 0.04 1.14 5.99 -19.12 -0.11 1.03 16 3 C -0.22 -6.81 5.89 -20.00 -0.12 -6.92 16 4 C 0.56 19.17 7.72 86.76 0.67 19.84 16 5 O -0.57 -21.33 13.44 -3.91 -0.05 -21.38 16 6 N -0.70 -23.40 5.37 -466.05 -2.50 -25.90 16 7 C 0.13 4.71 4.91 86.38 0.42 5.13 16 8 C 0.16 5.65 0.81 4.13 0.00 5.65 16 9 N -0.71 -32.31 5.23 -300.97 -1.57 -33.88 16 10 C -0.22 -11.53 9.42 84.03 0.79 -10.73 16 11 H 0.07 3.56 6.96 -2.91 -0.02 3.54 16 12 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 13 N -0.96 -56.89 13.06 21.65 0.28 -56.61 16 14 Si 0.95 46.43 29.55 68.60 2.03 48.46 16 15 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 17 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 18 C -0.13 -3.65 7.16 31.12 0.22 -3.42 16 19 C -0.12 -3.54 7.99 31.12 0.25 -3.29 16 20 C -0.15 -4.95 7.39 31.12 0.23 -4.72 16 21 C 0.16 4.88 10.67 85.41 0.91 5.79 16 22 N -0.50 -15.39 10.30 -187.69 -1.93 -17.33 16 23 C 0.12 3.19 6.61 40.28 0.27 3.46 16 24 C -0.12 -2.46 9.97 22.34 0.22 -2.24 16 25 C -0.08 -1.02 9.94 22.04 0.22 -0.80 16 26 C -0.11 -1.39 9.96 22.05 0.22 -1.17 16 27 C -0.09 -1.55 9.32 22.35 0.21 -1.34 16 28 C -0.13 -3.20 5.74 -21.29 -0.12 -3.32 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.55 6.21 -2.39 -0.01 1.54 16 31 H 0.08 2.37 5.92 -2.39 -0.01 2.35 16 32 H 0.40 13.07 6.49 -92.71 -0.60 12.47 16 33 H 0.04 1.54 7.03 -2.39 -0.02 1.53 16 34 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 35 H 0.38 18.68 7.83 -92.71 -0.73 17.95 16 36 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 37 H 0.10 2.45 8.10 -2.38 -0.02 2.43 16 38 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 2.57 8.03 -2.39 -0.02 2.55 16 43 H 0.17 4.57 6.42 -2.91 -0.02 4.55 16 44 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 46 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 47 H 0.16 1.80 6.30 -2.91 -0.02 1.78 16 Total: -1.00 -69.44 382.24 1.29 -68.14 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.31 Total: 40.95 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.35 Total: -2.46 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -5.73 Total: -133.72 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -69.44 1.29 -68.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280493923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.180 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds