Wall clock time and date at job start Tue Mar 31 2020 23:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36353 * 119.96113 * 2 1 4 4 C 1.38863 * 121.06337 * 180.02562 * 3 2 1 5 5 C 1.38742 * 120.72131 * 359.97438 * 4 3 2 6 6 C 1.47438 * 120.32948 * 180.02562 * 5 4 3 7 7 O 1.21605 * 120.00282 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00098 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99881 * 180.02562 * 8 6 5 10 10 H 1.08994 * 112.85212 * 336.19078 * 9 8 6 11 11 C 1.53781 * 113.61522 * 107.50260 * 9 8 6 12 12 C 1.53781 * 87.08207 * 89.11458 * 11 9 8 13 13 H 1.08999 * 113.69198 * 270.87065 * 12 11 9 14 14 C 1.53001 * 113.61627 * 139.98144 * 12 11 9 15 15 N 1.46496 * 109.47166 * 87.49710 * 14 12 11 16 16 C 1.36942 * 120.00051 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99540 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99975 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00004 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47022 * 90.00054 * 20 18 16 22 22 H 1.48507 * 109.46917 * 209.99871 * 20 18 16 23 23 H 1.48497 * 109.47564 * 329.99675 * 20 18 16 24 24 C 1.53784 * 87.08496 * 25.43044 * 12 11 9 25 25 C 1.41777 * 119.33885 * 0.02809 * 5 4 3 26 26 N 1.33346 * 121.04930 * 179.97438 * 25 5 4 27 27 C 1.31234 * 121.35102 * 179.97438 * 26 25 5 28 28 C 1.39229 * 121.69503 * 0.02562 * 27 26 25 29 29 C 1.36633 * 119.91242 * 359.97438 * 28 27 26 30 30 C 1.40441 * 119.96055 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47249 * 269.98434 * 1 2 3 32 32 H 1.08998 * 109.46761 * 29.98374 * 1 2 3 33 33 H 1.08994 * 109.47121 * 149.98096 * 1 2 3 34 34 H 1.08007 * 119.46752 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.64061 * 180.02562 * 4 3 2 36 36 H 0.97001 * 120.00208 * 359.97438 * 8 6 5 37 37 H 1.08998 * 113.61029 * 203.66269 * 11 9 8 38 38 H 1.08996 * 113.61190 * 334.56328 * 11 9 8 39 39 H 1.08999 * 109.46806 * 207.50151 * 14 12 11 40 40 H 1.09006 * 109.46978 * 327.50043 * 14 12 11 41 41 H 0.97000 * 119.99971 * 0.02562 * 15 14 12 42 42 H 0.96997 * 120.00404 * 180.02562 * 19 18 16 43 43 H 1.08996 * 113.61896 * 220.02207 * 24 12 11 44 44 H 1.09000 * 113.61192 * 89.10981 * 24 12 11 45 45 H 1.08002 * 119.14630 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.04248 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.92338 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2080 -0.0005 5 6 4.3079 0.0292 -0.0005 6 6 5.7818 0.0676 -0.0005 7 8 6.4171 -0.9693 -0.0010 8 7 6.4250 1.2519 0.0000 9 6 7.8896 1.2901 -0.0006 10 1 8.3368 0.3822 0.4041 11 6 8.4938 1.7307 -1.3443 12 6 8.4033 3.1743 -0.8221 13 1 7.4547 3.6623 -1.0459 14 6 9.6146 4.0350 -1.1866 15 7 9.4015 4.6465 -2.5007 16 6 10.3586 5.4653 -3.0381 17 1 11.2706 5.6599 -2.4934 18 6 10.1564 6.0451 -4.2830 19 7 11.0765 6.8317 -4.7998 20 14 8.5786 5.7090 -5.2248 21 1 7.5591 6.7259 -4.8616 22 1 8.8486 5.7778 -6.6835 23 1 8.0737 4.3562 -4.8782 24 6 8.4723 2.5824 0.5956 25 6 3.6241 -1.2128 -0.0006 26 7 4.2931 -2.3663 -0.0011 27 6 3.6662 -3.5192 -0.0007 28 6 2.2760 -3.5959 -0.0002 29 6 1.5304 -2.4509 0.0004 30 6 2.2083 -1.2167 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6386 2.1113 -0.0004 35 1 4.0923 2.1568 -0.0001 36 1 5.9183 2.0791 0.0000 37 1 9.5162 1.3851 -1.4975 38 1 7.8469 1.5342 -2.1993 39 1 9.7429 4.8171 -0.4383 40 1 10.5079 3.4110 -1.2168 41 1 8.5822 4.4719 -2.9897 42 1 10.9351 7.2372 -5.6695 43 1 7.8080 3.0736 1.3066 44 1 9.4888 2.4696 0.9726 45 1 4.2436 -4.4319 -0.0016 46 1 1.7876 -4.5592 0.0006 47 1 0.4512 -2.4914 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283062228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:15 Heat of formation + Delta-G solvation = 60.828484 kcal Electronic energy + Delta-G solvation = -28050.326126 eV Core-core repulsion = 24199.196076 eV Total energy + Delta-G solvation = -3851.130050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43488 -40.03004 -38.26632 -37.56852 -34.66317 -34.47574 -33.13844 -31.53720 -31.08667 -30.90906 -28.16168 -26.95809 -25.54458 -24.70689 -24.05562 -23.38773 -22.44547 -21.32352 -20.42810 -19.25450 -18.60658 -17.94910 -17.50228 -17.40013 -16.10164 -15.83967 -15.30536 -15.08863 -14.77519 -14.60297 -14.48605 -14.35681 -14.14296 -14.07240 -13.73910 -13.59910 -13.33515 -13.30279 -12.68828 -12.60375 -12.43925 -12.32976 -12.26469 -11.84919 -11.73100 -11.65309 -11.37140 -10.88119 -10.76470 -10.59779 -10.19515 -10.15994 -10.13186 -9.85624 -9.55344 -9.39716 -9.21618 -9.00030 -8.84093 -8.53521 -7.18458 -5.74008 -3.08718 -0.24905 0.42419 1.37811 2.34358 2.99765 3.07036 3.38881 3.42020 3.46680 3.81706 3.91313 4.06738 4.22266 4.35902 4.38898 4.53122 4.60946 4.61575 4.65424 4.73239 4.83007 4.90073 5.02058 5.03554 5.07047 5.07797 5.23040 5.35818 5.48489 5.54557 5.56913 5.61552 5.70396 5.73671 5.74138 5.88470 5.90929 5.93922 6.00735 6.07409 6.17685 6.19364 6.32458 6.38088 6.62750 6.72687 6.86953 7.45579 7.69935 8.03175 8.24774 8.45493 9.25162 9.97762 10.18128 11.44647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.002318 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.873193 B =12074.210005 C =12910.063707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.130 4.130 4 C -0.056 4.056 5 C -0.114 4.114 6 C 0.555 3.445 7 O -0.498 6.498 8 N -0.711 5.711 9 C 0.119 3.881 10 H 0.101 0.899 11 C -0.141 4.141 12 C -0.119 4.119 13 H 0.085 0.915 14 C 0.167 3.833 15 N -0.756 5.756 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.936 5.936 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.136 4.136 25 C 0.166 3.834 26 N -0.438 5.438 27 C 0.132 3.868 28 C -0.176 4.176 29 C -0.060 4.060 30 C -0.110 4.110 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.396 0.604 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.029 0.971 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.161 0.839 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.629 -18.921 14.599 35.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.118 4.118 6 C 0.341 3.659 7 O -0.372 6.372 8 N -0.364 5.364 9 C 0.014 3.986 10 H 0.119 0.881 11 C -0.180 4.180 12 C -0.138 4.138 13 H 0.103 0.897 14 C 0.040 3.960 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.584 5.584 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.175 4.175 25 C 0.043 3.957 26 N -0.144 5.144 27 C -0.040 4.040 28 C -0.196 4.196 29 C -0.086 4.086 30 C -0.112 4.112 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.232 0.768 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.178 0.822 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.980 -19.429 14.575 34.132 hybrid contribution -2.262 0.333 -0.920 2.464 sum -26.242 -19.096 13.656 35.210 Atomic orbital electron populations 1.20936 0.90308 1.03615 1.03058 1.19907 0.96367 0.91945 0.95675 1.20726 0.93805 0.98164 1.02088 1.21460 0.94338 0.97363 0.94484 1.19884 0.93601 0.92034 1.06262 1.17890 0.86608 0.83935 0.77436 1.90850 1.67304 1.32157 1.46903 1.45629 1.06909 1.08036 1.75807 1.21906 0.79265 0.99441 0.97990 0.88053 1.23454 1.01803 0.95987 0.96750 1.22815 1.00259 0.95458 0.95239 0.89671 1.20622 0.93950 0.93771 0.87704 1.42708 1.21178 1.57839 1.18370 1.19086 0.98442 1.19053 1.00604 0.89263 1.24679 0.97712 0.99555 0.97417 1.69702 1.34134 1.35811 1.18746 0.86532 0.84351 0.77859 0.79726 1.21170 1.21770 1.20323 1.23304 1.01926 0.95319 0.96910 1.18582 0.88843 0.91984 0.96296 1.68350 1.38782 0.97222 1.10075 1.23217 0.91917 0.96450 0.92432 1.21981 0.95688 0.99627 1.02285 1.21500 1.00492 0.91236 0.95365 1.18677 0.93747 0.94391 1.04367 0.90252 0.90551 0.90949 0.84658 0.84631 0.76826 0.88844 0.91520 0.95530 0.95356 0.80751 0.93117 0.91187 0.88471 0.82224 0.84387 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.53 36.00 0.34 -0.16 16 2 C -0.04 -0.28 5.89 -104.47 -0.62 -0.90 16 3 C -0.13 -0.94 9.57 -40.03 -0.38 -1.32 16 4 C -0.06 -0.49 9.52 -39.16 -0.37 -0.86 16 5 C -0.11 -1.39 5.91 -104.61 -0.62 -2.01 16 6 C 0.56 7.91 7.76 -12.52 -0.10 7.81 16 7 O -0.50 -8.92 14.79 5.27 0.08 -8.84 16 8 N -0.71 -8.48 5.21 -54.08 -0.28 -8.76 16 9 C 0.12 1.52 4.32 -67.11 -0.29 1.23 16 10 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 11 C -0.14 -2.07 7.43 -25.92 -0.19 -2.26 16 12 C -0.12 -1.75 3.63 -89.81 -0.33 -2.08 16 13 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.17 3.20 6.10 -4.04 -0.02 3.17 16 15 N -0.76 -18.22 5.41 -59.91 -0.32 -18.54 16 16 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 19 N -0.94 -29.85 13.97 55.49 0.78 -29.08 16 20 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 24 C -0.14 -1.59 7.39 -25.91 -0.19 -1.78 16 25 C 0.17 2.10 6.61 -84.59 -0.56 1.55 16 26 N -0.44 -5.98 8.44 -10.77 -0.09 -6.07 16 27 C 0.13 1.27 11.15 -17.44 -0.19 1.08 16 28 C -0.18 -1.21 10.03 -39.79 -0.40 -1.61 16 29 C -0.06 -0.43 9.36 -39.19 -0.37 -0.79 16 30 C -0.11 -1.05 5.74 -106.82 -0.61 -1.66 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.07 0.24 6.42 -51.93 -0.33 -0.10 16 34 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.14 0.86 6.37 -52.49 -0.33 0.52 16 36 H 0.40 3.72 6.72 -40.82 -0.27 3.45 16 37 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 41 H 0.36 8.48 5.53 -40.82 -0.23 8.26 16 42 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 45 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 47 H 0.14 0.55 6.42 -52.49 -0.34 0.22 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -37.76 384.27 -10.44 -48.21 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.52 Total: 7.31 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -5.15 Total: -7.78 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.08 Total: -62.45 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.76 -10.44 -48.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283062228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.037 kcal (2) G-P(sol) polarization free energy of solvation -37.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds