Wall clock time and date at job start Tue Mar 31 2020 23:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36353 * 119.96113 * 2 1 4 4 C 1.38863 * 121.06337 * 180.02562 * 3 2 1 5 5 C 1.38742 * 120.72131 * 359.97438 * 4 3 2 6 6 C 1.47438 * 120.32948 * 180.02562 * 5 4 3 7 7 O 1.21605 * 120.00282 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00098 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99881 * 180.02562 * 8 6 5 10 10 H 1.08994 * 112.85212 * 336.19078 * 9 8 6 11 11 C 1.53781 * 113.61522 * 107.50260 * 9 8 6 12 12 C 1.53781 * 87.08207 * 89.11458 * 11 9 8 13 13 H 1.08999 * 113.69198 * 270.87065 * 12 11 9 14 14 C 1.53001 * 113.61627 * 139.98144 * 12 11 9 15 15 N 1.46496 * 109.47166 * 87.49710 * 14 12 11 16 16 C 1.36942 * 120.00051 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99540 * 0.02562 * 16 15 14 18 18 C 1.38807 * 119.99983 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99975 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00004 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47022 * 90.00054 * 20 18 16 22 22 H 1.48507 * 109.46917 * 209.99871 * 20 18 16 23 23 H 1.48497 * 109.47564 * 329.99675 * 20 18 16 24 24 C 1.53784 * 87.08496 * 25.43044 * 12 11 9 25 25 C 1.41777 * 119.33885 * 0.02809 * 5 4 3 26 26 N 1.33346 * 121.04930 * 179.97438 * 25 5 4 27 27 C 1.31234 * 121.35102 * 179.97438 * 26 25 5 28 28 C 1.39229 * 121.69503 * 0.02562 * 27 26 25 29 29 C 1.36633 * 119.91242 * 359.97438 * 28 27 26 30 30 C 1.40441 * 119.96055 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47249 * 269.98434 * 1 2 3 32 32 H 1.08998 * 109.46761 * 29.98374 * 1 2 3 33 33 H 1.08994 * 109.47121 * 149.98096 * 1 2 3 34 34 H 1.08007 * 119.46752 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.64061 * 180.02562 * 4 3 2 36 36 H 0.97001 * 120.00208 * 359.97438 * 8 6 5 37 37 H 1.08998 * 113.61029 * 203.66269 * 11 9 8 38 38 H 1.08996 * 113.61190 * 334.56328 * 11 9 8 39 39 H 1.08999 * 109.46806 * 207.50151 * 14 12 11 40 40 H 1.09006 * 109.46978 * 327.50043 * 14 12 11 41 41 H 0.97000 * 119.99971 * 0.02562 * 15 14 12 42 42 H 0.96997 * 120.00404 * 180.02562 * 19 18 16 43 43 H 1.08996 * 113.61896 * 220.02207 * 24 12 11 44 44 H 1.09000 * 113.61192 * 89.10981 * 24 12 11 45 45 H 1.08002 * 119.14630 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.04248 * 180.02562 * 28 27 26 47 47 H 1.07995 * 120.92338 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2080 -0.0005 5 6 4.3079 0.0292 -0.0005 6 6 5.7818 0.0676 -0.0005 7 8 6.4171 -0.9693 -0.0010 8 7 6.4250 1.2519 0.0000 9 6 7.8896 1.2901 -0.0006 10 1 8.3368 0.3822 0.4041 11 6 8.4938 1.7307 -1.3443 12 6 8.4033 3.1743 -0.8221 13 1 7.4547 3.6623 -1.0459 14 6 9.6146 4.0350 -1.1866 15 7 9.4015 4.6465 -2.5007 16 6 10.3586 5.4653 -3.0381 17 1 11.2706 5.6599 -2.4934 18 6 10.1564 6.0451 -4.2830 19 7 11.0765 6.8317 -4.7998 20 14 8.5786 5.7090 -5.2248 21 1 7.5591 6.7259 -4.8616 22 1 8.8486 5.7778 -6.6835 23 1 8.0737 4.3562 -4.8782 24 6 8.4723 2.5824 0.5956 25 6 3.6241 -1.2128 -0.0006 26 7 4.2931 -2.3663 -0.0011 27 6 3.6662 -3.5192 -0.0007 28 6 2.2760 -3.5959 -0.0002 29 6 1.5304 -2.4509 0.0004 30 6 2.2083 -1.2167 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6386 2.1113 -0.0004 35 1 4.0923 2.1568 -0.0001 36 1 5.9183 2.0791 0.0000 37 1 9.5162 1.3851 -1.4975 38 1 7.8469 1.5342 -2.1993 39 1 9.7429 4.8171 -0.4383 40 1 10.5079 3.4110 -1.2168 41 1 8.5822 4.4719 -2.9897 42 1 10.9351 7.2372 -5.6695 43 1 7.8080 3.0736 1.3066 44 1 9.4888 2.4696 0.9726 45 1 4.2436 -4.4319 -0.0016 46 1 1.7876 -4.5592 0.0006 47 1 0.4512 -2.4914 0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283062228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:14 Heat of formation + Delta-G solvation = 35.150474 kcal Electronic energy + Delta-G solvation = -28051.439608 eV Core-core repulsion = 24199.196076 eV Total energy + Delta-G solvation = -3852.243532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11854 -41.05226 -39.35147 -38.21342 -36.48161 -35.16974 -34.36307 -33.19427 -32.02635 -31.55901 -29.17074 -28.14876 -26.64746 -25.31920 -25.10094 -24.50318 -23.55181 -22.85620 -21.21999 -20.51802 -19.52297 -19.19144 -18.72207 -18.03325 -17.06899 -16.72732 -16.60565 -16.20547 -15.98810 -15.77037 -15.45914 -15.34562 -15.04975 -14.98669 -14.87392 -14.44427 -14.29349 -14.09708 -13.97481 -13.86232 -13.51013 -13.37994 -13.09583 -13.00718 -12.79320 -12.73101 -12.35685 -12.20066 -12.18661 -11.88127 -11.72103 -11.42614 -11.37300 -11.19697 -11.11332 -10.89816 -10.16336 -10.05054 -9.83969 -9.27993 -9.17415 -8.03351 -5.36216 -0.88076 -0.19327 0.72095 1.36165 1.40320 1.47662 1.70029 2.06715 2.20463 2.47712 3.11609 3.27228 3.31113 3.46189 3.48590 3.57338 3.69463 3.81024 3.85801 3.87936 3.92094 3.94933 4.06060 4.10689 4.38490 4.40414 4.49439 4.54490 4.71517 4.74927 4.81464 4.83646 4.84652 4.89310 4.91070 4.96269 4.98061 5.07936 5.11646 5.14330 5.19516 5.25214 5.34290 5.41861 5.55501 5.66765 5.76151 5.82254 6.21163 6.54438 7.04157 7.08069 7.27922 7.85389 8.04399 9.18421 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.002318 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.873193 B =12074.210005 C =12910.063707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.027 4.027 3 C -0.141 4.141 4 C -0.040 4.040 5 C -0.160 4.160 6 C 0.552 3.448 7 O -0.549 6.549 8 N -0.700 5.700 9 C 0.125 3.875 10 H 0.088 0.912 11 C -0.146 4.146 12 C -0.112 4.112 13 H 0.097 0.903 14 C 0.162 3.838 15 N -0.758 5.758 16 C -0.235 4.235 17 H 0.055 0.945 18 C -0.068 4.068 19 N -0.985 5.985 20 Si 0.958 3.042 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.255 1.255 24 C -0.115 4.115 25 C 0.136 3.864 26 N -0.498 5.498 27 C 0.119 3.881 28 C -0.175 4.175 29 C -0.053 4.053 30 C -0.130 4.130 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.410 0.590 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.022 0.978 41 H 0.365 0.635 42 H 0.258 0.742 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.173 0.827 46 H 0.175 0.825 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.395 -19.219 15.436 39.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.028 4.028 3 C -0.158 4.158 4 C -0.060 4.060 5 C -0.164 4.164 6 C 0.340 3.660 7 O -0.427 6.427 8 N -0.353 5.353 9 C 0.020 3.980 10 H 0.107 0.893 11 C -0.185 4.185 12 C -0.130 4.130 13 H 0.115 0.885 14 C 0.036 3.964 15 N -0.403 5.403 16 C -0.366 4.366 17 H 0.073 0.927 18 C -0.259 4.259 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.224 1.224 23 H -0.180 1.180 24 C -0.154 4.154 25 C 0.014 3.986 26 N -0.206 5.206 27 C -0.052 4.052 28 C -0.195 4.195 29 C -0.079 4.079 30 C -0.132 4.132 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.186 0.814 35 H 0.175 0.825 36 H 0.248 0.752 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.198 0.802 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.123 0.877 45 H 0.190 0.810 46 H 0.193 0.807 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -28.780 -19.727 15.461 38.164 hybrid contribution -0.776 0.382 -1.113 1.410 sum -29.556 -19.344 14.348 38.126 Atomic orbital electron populations 1.21060 0.87476 1.04989 1.04336 1.20391 0.98285 0.91152 0.92944 1.21128 0.93206 0.99598 1.01888 1.21776 0.95282 0.96946 0.91999 1.19858 0.92370 0.93530 1.10621 1.18356 0.87752 0.83605 0.76251 1.90805 1.68518 1.33844 1.49532 1.45508 1.06476 1.08226 1.75069 1.21744 0.79883 0.99558 0.96835 0.89342 1.23469 1.01370 0.96349 0.97300 1.22748 0.98606 0.94260 0.97418 0.88461 1.20815 0.95973 0.94082 0.85492 1.42732 1.20287 1.57322 1.20001 1.19077 0.98141 1.19003 1.00371 0.92683 1.25553 1.01737 0.99870 0.98735 1.69891 1.36773 1.37620 1.19301 0.85356 0.79807 0.78923 0.77376 1.19846 1.22381 1.18027 1.23222 1.02925 0.93664 0.95555 1.18932 0.90539 0.91876 0.97300 1.68276 1.40873 0.98672 1.12730 1.23657 0.93783 0.96012 0.91753 1.22306 0.94413 1.01452 1.01285 1.21984 1.02239 0.90218 0.93454 1.18991 0.92751 0.96453 1.04994 0.88748 0.89095 0.89741 0.81415 0.82479 0.75169 0.89625 0.92794 0.95297 0.95998 0.80169 0.93345 0.88657 0.87694 0.81035 0.80746 0.80393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 9.53 71.24 0.68 0.22 16 2 C -0.03 -0.32 5.89 -19.77 -0.12 -0.43 16 3 C -0.14 -1.61 9.57 21.98 0.21 -1.40 16 4 C -0.04 -0.63 9.52 22.54 0.21 -0.41 16 5 C -0.16 -3.96 5.91 -19.86 -0.12 -4.08 16 6 C 0.55 16.32 7.76 86.67 0.67 16.99 16 7 O -0.55 -21.06 14.79 -4.05 -0.06 -21.12 16 8 N -0.70 -16.30 5.21 -443.27 -2.31 -18.61 16 9 C 0.13 3.16 4.32 45.52 0.20 3.35 16 10 H 0.09 2.51 7.46 -2.39 -0.02 2.49 16 11 C -0.15 -4.24 7.43 31.12 0.23 -4.00 16 12 C -0.11 -3.09 3.63 -10.27 -0.04 -3.13 16 13 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 14 C 0.16 6.10 6.10 86.38 0.53 6.63 16 15 N -0.76 -35.99 5.41 -343.45 -1.86 -37.85 16 16 C -0.23 -13.74 10.47 84.03 0.88 -12.86 16 17 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 18 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 19 N -0.99 -64.33 13.97 21.65 0.30 -64.02 16 20 Si 0.96 46.27 27.74 68.60 1.90 48.17 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 24 C -0.12 -2.46 7.39 31.12 0.23 -2.23 16 25 C 0.14 3.54 6.61 40.61 0.27 3.81 16 26 N -0.50 -14.46 8.44 -187.97 -1.59 -16.04 16 27 C 0.12 2.35 11.15 85.02 0.95 3.30 16 28 C -0.18 -2.10 10.03 22.13 0.22 -1.88 16 29 C -0.05 -0.62 9.36 22.52 0.21 -0.41 16 30 C -0.13 -2.28 5.74 -21.29 -0.12 -2.41 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.09 0.14 8.08 -2.39 -0.02 0.12 16 33 H 0.08 0.14 6.42 -2.39 -0.02 0.12 16 34 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.16 1.57 6.37 -2.91 -0.02 1.55 16 36 H 0.41 6.93 6.72 -92.71 -0.62 6.30 16 37 H 0.09 2.59 7.90 -2.39 -0.02 2.58 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.02 0.86 7.84 -2.38 -0.02 0.84 16 41 H 0.37 16.51 5.53 -92.71 -0.51 16.00 16 42 H 0.26 15.99 8.31 -92.71 -0.77 15.21 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 2.13 8.10 -2.39 -0.02 2.11 16 45 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 46 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 47 H 0.18 0.58 6.42 -2.91 -0.02 0.56 16 Total: -1.00 -87.85 384.27 1.77 -86.07 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.18 Total: 25.95 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.56 Total: -2.55 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -5.45 Total: -136.53 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.90 Total: 48.17 kcal Total: -87.85 1.77 -86.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283062228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.225 kcal (2) G-P(sol) polarization free energy of solvation -87.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds