Wall clock time and date at job start Tue Mar 31 2020 22:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48506 * 109.47152 * 89.99962 * 3 2 1 5 5 H 1.48502 * 109.47408 * 209.99492 * 3 2 1 6 6 H 1.48496 * 109.47210 * 330.00002 * 3 2 1 7 7 C 1.38814 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00393 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99642 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99745 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46944 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88525 * 308.88098 * 11 10 9 13 13 C 1.55154 * 111.00184 * 184.99654 * 11 10 9 14 14 C 1.54330 * 102.94341 * 206.42313 * 13 11 10 15 15 N 1.47026 * 107.26947 * 22.19549 * 14 13 11 16 16 C 1.34770 * 125.65109 * 181.01371 * 15 14 13 17 17 O 1.21579 * 120.00223 * 174.34820 * 16 15 14 18 18 C 1.47650 * 119.99936 * 354.34838 * 16 15 14 19 19 C 1.39720 * 120.07563 * 7.02523 * 18 16 15 20 20 C 1.37716 * 119.92034 * 179.69951 * 19 18 16 21 21 C 1.39058 * 120.07663 * 0.57414 * 20 19 18 22 22 N 1.39792 * 119.92315 * 179.74454 * 21 20 19 23 23 C 1.36638 * 125.68341 * 179.67128 * 22 21 20 24 24 C 1.34801 * 108.20043 * 179.86514 * 23 22 21 25 25 C 1.40988 * 107.48279 * 0.38857 * 24 23 22 26 26 C 1.34806 * 107.47784 * 359.75926 * 25 24 23 27 27 C 1.39064 * 120.15590 * 359.71970 * 21 20 19 28 28 C 1.37708 * 120.07864 * 359.97438 * 27 21 20 29 29 C 1.47424 * 108.70165 * 1.05787 * 15 14 13 30 30 H 0.96994 * 119.99986 * 180.02562 * 1 2 3 31 31 H 0.96994 * 120.00040 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46826 * 299.99724 * 10 9 7 33 33 H 1.08994 * 109.47489 * 59.99675 * 10 9 7 34 34 H 1.08998 * 110.72433 * 324.78333 * 13 11 10 35 35 H 1.09000 * 110.72261 * 87.88790 * 13 11 10 36 36 H 1.09001 * 109.88141 * 141.60939 * 14 13 11 37 37 H 1.08999 * 109.88038 * 262.77855 * 14 13 11 38 38 H 1.08003 * 120.04026 * 359.97438 * 19 18 16 39 39 H 1.07991 * 119.96234 * 180.29715 * 20 19 18 40 40 H 1.08006 * 125.89798 * 359.97438 * 23 22 21 41 41 H 1.08004 * 126.26656 * 180.16811 * 24 23 22 42 42 H 1.08001 * 126.25996 * 179.73300 * 25 24 23 43 43 H 1.08005 * 125.90061 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.96000 * 179.97438 * 27 21 20 45 45 H 1.08007 * 120.03626 * 180.02562 * 28 27 21 46 46 H 1.08999 * 110.37138 * 217.03600 * 29 15 14 47 47 H 1.09004 * 110.36892 * 94.71406 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.6999 6 1 1.4477 2.6526 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.3251 -4.6991 0.7945 13 6 1.7991 -6.1800 0.1294 14 6 0.8248 -7.1647 -0.5510 15 7 -0.0326 -6.3788 -1.4504 16 6 -1.0288 -6.8699 -2.2138 17 8 -1.7417 -6.1129 -2.8438 18 6 -1.2544 -8.3273 -2.2853 19 6 -0.5355 -9.1887 -1.4526 20 6 -0.7529 -10.5471 -1.5176 21 6 -1.6780 -11.0625 -2.4188 22 7 -1.8923 -12.4423 -2.4858 23 6 -2.7730 -13.0726 -3.3188 24 6 -2.6911 -14.3989 -3.0924 25 6 -1.7327 -14.5970 -2.0776 26 6 -1.2601 -13.3848 -1.7248 27 6 -2.3909 -10.2085 -3.2533 28 6 -2.1831 -8.8487 -3.1894 29 6 0.3785 -4.9648 -1.3796 30 1 -0.4850 -0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6853 -3.7149 -0.8879 33 1 2.6840 -3.7142 0.8921 34 1 2.7524 -6.1541 -0.3985 35 1 1.9471 -6.4418 1.1771 36 1 1.3848 -7.9035 -1.1244 37 1 0.2142 -7.6621 0.2025 38 1 0.1867 -8.7895 -0.7558 39 1 -0.2011 -11.2131 -0.8710 40 1 -3.4213 -12.5913 -4.0362 41 1 -3.2587 -15.1689 -3.5939 42 1 -1.4323 -15.5463 -1.6591 43 1 -0.5108 -13.1919 -0.9713 44 1 -3.1083 -10.6123 -3.9524 45 1 -2.7375 -8.1860 -3.8376 46 1 -0.4928 -4.3128 -1.4412 47 1 1.0831 -4.7341 -2.1787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317327248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:17 Heat of formation + Delta-G solvation = 88.700349 kcal Electronic energy + Delta-G solvation = -27825.822982 eV Core-core repulsion = 23975.901546 eV Total energy + Delta-G solvation = -3849.921436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08086 -40.66237 -38.79218 -37.63036 -35.07557 -33.74662 -32.58265 -31.70857 -30.48222 -29.74581 -29.28605 -28.50810 -25.65336 -24.42468 -23.42268 -23.13987 -22.25167 -20.74819 -20.44315 -20.21655 -20.03728 -18.80783 -17.70610 -17.14985 -16.51144 -15.99699 -15.44535 -15.35795 -15.17916 -14.95784 -14.55287 -14.30843 -14.17179 -13.95347 -13.87996 -13.67819 -13.36913 -13.18920 -13.01345 -12.84368 -12.73130 -12.54731 -12.46527 -12.22091 -11.97414 -11.43690 -10.99118 -10.80824 -10.65907 -10.59928 -10.45420 -10.26632 -10.03582 -10.00604 -9.58810 -9.17956 -8.89807 -8.76372 -8.70497 -8.42743 -7.02389 -6.10675 -3.11279 0.15962 0.82282 1.83283 2.36199 2.57009 2.71535 2.82062 3.47616 3.51603 3.56742 3.70944 4.10116 4.17507 4.24414 4.42910 4.52647 4.58314 4.63709 4.71251 4.75475 4.78209 4.82864 5.01682 5.06776 5.13582 5.19006 5.26149 5.41106 5.44396 5.55871 5.60698 5.65338 5.73690 5.78621 5.80084 5.82933 5.85178 5.88134 5.90420 6.08838 6.18019 6.19835 6.30629 6.45938 6.56850 6.68517 6.73147 6.96478 7.38641 7.79713 8.03208 8.75370 9.21533 10.07955 10.22038 11.37782 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.001816 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.435732 B =15416.165638 C =16080.018322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.085 0.915 13 C -0.128 4.128 14 C 0.089 3.911 15 N -0.612 5.612 16 C 0.570 3.430 17 O -0.533 6.533 18 C -0.140 4.140 19 C -0.095 4.095 20 C -0.150 4.150 21 C 0.161 3.839 22 N -0.399 5.399 23 C -0.015 4.015 24 C -0.189 4.189 25 C -0.189 4.189 26 C -0.015 4.015 27 C -0.151 4.151 28 C -0.030 4.030 29 C 0.115 3.885 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.023 0.977 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.171 0.829 39 H 0.135 0.865 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.166 0.834 44 H 0.136 0.864 45 H 0.146 0.854 46 H 0.084 0.916 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 -30.737 -3.214 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.914 3.086 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.103 0.897 13 C -0.166 4.166 14 C -0.033 4.033 15 N -0.345 5.345 16 C 0.360 3.640 17 O -0.411 6.411 18 C -0.144 4.144 19 C -0.113 4.113 20 C -0.169 4.169 21 C 0.068 3.932 22 N -0.071 5.071 23 C -0.141 4.141 24 C -0.213 4.213 25 C -0.213 4.213 26 C -0.141 4.141 27 C -0.170 4.170 28 C -0.049 4.049 29 C -0.006 4.006 30 H 0.067 0.933 31 H 0.200 0.800 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.188 0.812 39 H 0.153 0.847 40 H 0.183 0.817 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.184 0.816 44 H 0.154 0.846 45 H 0.163 0.837 46 H 0.102 0.898 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.623 -28.418 -3.606 28.692 hybrid contribution -0.101 -1.891 0.021 1.894 sum -1.724 -30.309 -3.585 30.569 Atomic orbital electron populations 1.70845 1.06057 1.28506 1.53357 1.25795 0.97054 1.01054 1.00322 0.83189 0.73864 0.75302 0.76215 1.22312 1.22153 1.21358 1.20042 0.92034 0.85771 1.48752 0.91687 1.42380 1.04900 1.00918 1.90809 1.20519 0.92579 0.84267 0.98366 1.22621 0.98546 0.94938 0.96569 0.89653 1.22729 0.98314 0.94178 1.01397 1.22548 0.92869 0.95053 0.92872 1.48410 1.33038 1.10171 1.42892 1.17816 0.79539 0.87517 0.79172 1.90820 1.45781 1.59529 1.44920 1.19972 1.00711 0.93172 1.00516 1.22714 0.98196 0.92454 0.97938 1.20799 0.99871 0.95983 1.00280 1.18140 0.96799 0.81328 0.96924 1.41666 1.31557 1.03569 1.30286 1.21972 0.99034 0.93045 1.00020 1.21042 1.03176 0.94901 1.02190 1.21043 1.01622 0.97052 1.01581 1.21958 1.03192 0.87793 1.01146 1.20773 1.02151 0.92912 1.01188 1.21144 0.94227 0.94117 0.95458 1.22392 1.00112 0.80475 0.97661 0.93325 0.79954 0.95885 0.95665 0.89994 0.89626 0.90422 0.90427 0.81242 0.84673 0.81659 0.84054 0.84045 0.81647 0.84578 0.83663 0.89796 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.48 13.70 55.49 0.76 -28.72 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 26.10 29.92 -169.99 -5.09 21.01 16 4 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.34 -9.46 9.99 -15.06 -0.15 -9.61 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.74 -18.51 5.55 -59.91 -0.33 -18.85 16 10 C 0.17 3.25 5.72 -4.04 -0.02 3.22 16 11 C -0.11 -1.58 3.05 -88.47 -0.27 -1.85 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -1.29 6.42 -24.89 -0.16 -1.45 16 14 C 0.09 0.82 4.86 -3.06 -0.01 0.81 16 15 N -0.61 -8.24 3.33 -176.53 -0.59 -8.82 16 16 C 0.57 8.45 7.80 -12.42 -0.10 8.35 16 17 O -0.53 -10.00 16.59 5.30 0.09 -9.91 16 18 C -0.14 -1.61 5.87 -104.95 -0.62 -2.22 16 19 C -0.10 -0.83 8.60 -39.22 -0.34 -1.17 16 20 C -0.15 -1.18 9.43 -39.47 -0.37 -1.56 16 21 C 0.16 1.43 6.62 -83.62 -0.55 0.88 16 22 N -0.40 -3.44 2.97 -60.90 -0.18 -3.63 16 23 C -0.01 -0.12 10.73 -16.63 -0.18 -0.29 16 24 C -0.19 -1.45 10.86 -39.76 -0.43 -1.88 16 25 C -0.19 -1.43 10.86 -39.76 -0.43 -1.86 16 26 C -0.01 -0.11 10.73 -16.63 -0.18 -0.29 16 27 C -0.15 -1.32 9.43 -39.47 -0.37 -1.69 16 28 C -0.03 -0.31 9.58 -39.23 -0.38 -0.69 16 29 C 0.12 1.83 6.35 -2.53 -0.02 1.81 16 30 H 0.26 7.89 6.77 -40.82 -0.28 7.61 16 31 H 0.37 9.43 6.50 -40.82 -0.27 9.17 16 32 H 0.02 0.45 7.96 -51.93 -0.41 0.03 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.56 6.73 -51.93 -0.35 0.21 16 37 H 0.08 0.59 6.74 -51.93 -0.35 0.24 16 38 H 0.17 1.16 2.73 -58.74 -0.16 1.00 16 39 H 0.14 0.74 6.68 -52.49 -0.35 0.39 16 40 H 0.17 0.92 6.99 -52.48 -0.37 0.56 16 41 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.17 0.85 6.99 -52.48 -0.37 0.48 16 44 H 0.14 0.90 6.68 -52.49 -0.35 0.55 16 45 H 0.15 1.52 7.66 -52.48 -0.40 1.12 16 46 H 0.08 1.56 7.99 -51.93 -0.41 1.15 16 47 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -35.87 380.50 -10.49 -46.37 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.22 Total: 7.70 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -4.67 Total: -10.89 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.34 Total: -60.01 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.09 Total: 21.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.87 -10.49 -46.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317327248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.066 kcal (2) G-P(sol) polarization free energy of solvation -35.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds