Wall clock time and date at job start Tue Mar 31 2020 22:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48506 * 109.47152 * 89.99962 * 3 2 1 5 5 H 1.48502 * 109.47408 * 209.99492 * 3 2 1 6 6 H 1.48496 * 109.47210 * 330.00002 * 3 2 1 7 7 C 1.38814 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00393 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99642 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99745 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46944 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.88525 * 308.88098 * 11 10 9 13 13 C 1.55154 * 111.00184 * 184.99654 * 11 10 9 14 14 C 1.54330 * 102.94341 * 206.42313 * 13 11 10 15 15 N 1.47026 * 107.26947 * 22.19549 * 14 13 11 16 16 C 1.34770 * 125.65109 * 181.01371 * 15 14 13 17 17 O 1.21579 * 120.00223 * 174.34820 * 16 15 14 18 18 C 1.47650 * 119.99936 * 354.34838 * 16 15 14 19 19 C 1.39720 * 120.07563 * 7.02523 * 18 16 15 20 20 C 1.37716 * 119.92034 * 179.69951 * 19 18 16 21 21 C 1.39058 * 120.07663 * 0.57414 * 20 19 18 22 22 N 1.39792 * 119.92315 * 179.74454 * 21 20 19 23 23 C 1.36638 * 125.68341 * 179.67128 * 22 21 20 24 24 C 1.34801 * 108.20043 * 179.86514 * 23 22 21 25 25 C 1.40988 * 107.48279 * 0.38857 * 24 23 22 26 26 C 1.34806 * 107.47784 * 359.75926 * 25 24 23 27 27 C 1.39064 * 120.15590 * 359.71970 * 21 20 19 28 28 C 1.37708 * 120.07864 * 359.97438 * 27 21 20 29 29 C 1.47424 * 108.70165 * 1.05787 * 15 14 13 30 30 H 0.96994 * 119.99986 * 180.02562 * 1 2 3 31 31 H 0.96994 * 120.00040 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46826 * 299.99724 * 10 9 7 33 33 H 1.08994 * 109.47489 * 59.99675 * 10 9 7 34 34 H 1.08998 * 110.72433 * 324.78333 * 13 11 10 35 35 H 1.09000 * 110.72261 * 87.88790 * 13 11 10 36 36 H 1.09001 * 109.88141 * 141.60939 * 14 13 11 37 37 H 1.08999 * 109.88038 * 262.77855 * 14 13 11 38 38 H 1.08003 * 120.04026 * 359.97438 * 19 18 16 39 39 H 1.07991 * 119.96234 * 180.29715 * 20 19 18 40 40 H 1.08006 * 125.89798 * 359.97438 * 23 22 21 41 41 H 1.08004 * 126.26656 * 180.16811 * 24 23 22 42 42 H 1.08001 * 126.25996 * 179.73300 * 25 24 23 43 43 H 1.08005 * 125.90061 * 180.02562 * 26 25 24 44 44 H 1.07997 * 119.96000 * 179.97438 * 27 21 20 45 45 H 1.08007 * 120.03626 * 180.02562 * 28 27 21 46 46 H 1.08999 * 110.37138 * 217.03600 * 29 15 14 47 47 H 1.09004 * 110.36892 * 94.71406 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.6999 6 1 1.4477 2.6526 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0638 -4.8197 0.0021 12 1 0.3251 -4.6991 0.7945 13 6 1.7991 -6.1800 0.1294 14 6 0.8248 -7.1647 -0.5510 15 7 -0.0326 -6.3788 -1.4504 16 6 -1.0288 -6.8699 -2.2138 17 8 -1.7417 -6.1129 -2.8438 18 6 -1.2544 -8.3273 -2.2853 19 6 -0.5355 -9.1887 -1.4526 20 6 -0.7529 -10.5471 -1.5176 21 6 -1.6780 -11.0625 -2.4188 22 7 -1.8923 -12.4423 -2.4858 23 6 -2.7730 -13.0726 -3.3188 24 6 -2.6911 -14.3989 -3.0924 25 6 -1.7327 -14.5970 -2.0776 26 6 -1.2601 -13.3848 -1.7248 27 6 -2.3909 -10.2085 -3.2533 28 6 -2.1831 -8.8487 -3.1894 29 6 0.3785 -4.9648 -1.3796 30 1 -0.4850 -0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6853 -3.7149 -0.8879 33 1 2.6840 -3.7142 0.8921 34 1 2.7524 -6.1541 -0.3985 35 1 1.9471 -6.4418 1.1771 36 1 1.3848 -7.9035 -1.1244 37 1 0.2142 -7.6621 0.2025 38 1 0.1867 -8.7895 -0.7558 39 1 -0.2011 -11.2131 -0.8710 40 1 -3.4213 -12.5913 -4.0362 41 1 -3.2587 -15.1689 -3.5939 42 1 -1.4323 -15.5463 -1.6591 43 1 -0.5108 -13.1919 -0.9713 44 1 -3.1083 -10.6123 -3.9524 45 1 -2.7375 -8.1860 -3.8376 46 1 -0.4928 -4.3128 -1.4412 47 1 1.0831 -4.7341 -2.1787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317327248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:16 Heat of formation + Delta-G solvation = 67.330435 kcal Electronic energy + Delta-G solvation = -27826.749651 eV Core-core repulsion = 23975.901546 eV Total energy + Delta-G solvation = -3850.848105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.65983 -41.64118 -39.63477 -38.78470 -36.83808 -34.66921 -33.89227 -32.52747 -31.95954 -30.57745 -29.89413 -29.60907 -27.05316 -25.73924 -24.55307 -24.14655 -23.40288 -21.63870 -21.31801 -21.04298 -20.84057 -19.46912 -19.33035 -18.49266 -17.68821 -17.04083 -16.43278 -16.20891 -16.03295 -15.96170 -15.85959 -15.71374 -15.18313 -14.94935 -14.85784 -14.77615 -14.49394 -14.26681 -14.11216 -13.73901 -13.55208 -13.39911 -13.23920 -13.04429 -12.94694 -12.79301 -12.57623 -12.42296 -12.00597 -11.87822 -11.71574 -11.68686 -11.20745 -11.18495 -10.94509 -10.94313 -10.26266 -9.85264 -9.24198 -9.12887 -9.08319 -8.41681 -5.35740 -0.58305 0.16075 1.14601 1.57467 1.68819 1.73251 1.81120 1.82697 1.83849 2.03808 2.69382 2.70821 3.21718 3.38966 3.42362 3.51402 3.61167 3.68800 3.76903 3.98151 3.99617 4.05787 4.12360 4.15952 4.25799 4.30059 4.38498 4.46420 4.53684 4.57760 4.68168 4.70323 4.74210 4.81783 4.88669 4.94822 4.96248 4.98675 5.05645 5.15141 5.22273 5.29882 5.32692 5.33482 5.51883 5.57780 5.93375 6.18240 6.34301 6.40396 6.46438 6.92610 7.07261 7.97543 8.08697 9.10136 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.001816 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.435732 B =15416.165638 C =16080.018322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.108 4.108 3 Si 1.132 2.868 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.296 1.296 7 C -0.334 4.334 8 H 0.071 0.929 9 N -0.760 5.760 10 C 0.168 3.832 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.114 4.114 14 C 0.082 3.918 15 N -0.611 5.611 16 C 0.562 3.438 17 O -0.591 6.591 18 C -0.161 4.161 19 C -0.083 4.083 20 C -0.144 4.144 21 C 0.160 3.840 22 N -0.407 5.407 23 C -0.033 4.033 24 C -0.199 4.199 25 C -0.202 4.202 26 C -0.024 4.024 27 C -0.151 4.151 28 C -0.042 4.042 29 C 0.118 3.882 30 H 0.242 0.758 31 H 0.358 0.642 32 H 0.024 0.976 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.193 0.807 39 H 0.168 0.832 40 H 0.180 0.820 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.192 0.808 44 H 0.153 0.847 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.972 -33.952 -1.840 34.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.956 3.044 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.223 1.223 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.042 3.958 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.038 4.038 15 N -0.342 5.342 16 C 0.354 3.646 17 O -0.473 6.473 18 C -0.165 4.165 19 C -0.100 4.100 20 C -0.163 4.163 21 C 0.067 3.933 22 N -0.080 5.080 23 C -0.158 4.158 24 C -0.223 4.223 25 C -0.225 4.225 26 C -0.149 4.149 27 C -0.171 4.171 28 C -0.062 4.062 29 C -0.005 4.005 30 H 0.052 0.948 31 H 0.189 0.811 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.210 0.790 39 H 0.185 0.815 40 H 0.197 0.803 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.209 0.791 44 H 0.170 0.830 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.721 -31.725 -2.205 31.810 hybrid contribution -0.805 -1.069 -0.434 1.406 sum -0.084 -32.794 -2.639 32.900 Atomic orbital electron populations 1.70967 1.07346 1.27783 1.56423 1.27287 0.97076 1.04957 1.00579 0.82577 0.73526 0.71312 0.76949 1.20868 1.19598 1.22270 1.20453 0.92534 0.87079 1.46507 0.91090 1.42666 1.04769 1.02307 1.90761 1.20715 0.93282 0.83366 0.98442 1.22431 0.97890 0.96280 0.95211 0.90522 1.22765 0.98215 0.90514 1.03676 1.22955 0.92764 0.95008 0.93104 1.48462 1.33197 1.09421 1.43163 1.18469 0.78933 0.88864 0.78336 1.90778 1.47986 1.61176 1.47392 1.19792 1.02793 0.91172 1.02716 1.22872 0.97639 0.92384 0.97132 1.21133 0.99305 0.95910 0.99964 1.18351 0.96612 0.81657 0.96728 1.41794 1.31983 1.03456 1.30750 1.22370 0.99457 0.93487 1.00527 1.21376 1.03335 0.95281 1.02330 1.21391 1.01579 0.97956 1.01598 1.22476 1.03464 0.87591 1.01368 1.20882 1.02503 0.92072 1.01617 1.21118 0.94506 0.94862 0.95670 1.22130 0.98206 0.81846 0.98314 0.94786 0.81057 0.95811 0.94608 0.88839 0.86613 0.87124 0.87636 0.79040 0.81463 0.80254 0.82750 0.82463 0.79124 0.82986 0.85005 0.94054 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.13 13.70 21.65 0.30 -62.83 16 2 C -0.11 -6.42 5.50 84.86 0.47 -5.95 16 3 Si 1.13 52.76 29.92 68.60 2.05 54.81 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.33 -19.05 9.99 84.03 0.84 -18.21 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.76 -38.75 5.55 -343.45 -1.90 -40.66 16 10 C 0.17 6.34 5.72 86.38 0.49 6.83 16 11 C -0.10 -2.85 3.05 -9.40 -0.03 -2.88 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -1.88 6.42 31.78 0.20 -1.68 16 14 C 0.08 1.22 4.86 86.73 0.42 1.65 16 15 N -0.61 -16.29 3.33 -830.68 -2.76 -19.05 16 16 C 0.56 17.25 7.80 86.73 0.68 17.93 16 17 O -0.59 -24.11 16.59 -3.96 -0.07 -24.18 16 18 C -0.16 -3.60 5.87 -20.08 -0.12 -3.72 16 19 C -0.08 -1.17 8.60 22.50 0.19 -0.98 16 20 C -0.14 -1.72 9.43 22.34 0.21 -1.51 16 21 C 0.16 2.45 6.62 38.27 0.25 2.70 16 22 N -0.41 -5.98 2.97 -346.58 -1.03 -7.01 16 23 C -0.03 -0.46 10.73 83.16 0.89 0.43 16 24 C -0.20 -2.66 10.86 22.15 0.24 -2.42 16 25 C -0.20 -2.53 10.86 22.16 0.24 -2.29 16 26 C -0.02 -0.29 10.73 83.16 0.89 0.60 16 27 C -0.15 -2.49 9.43 22.34 0.21 -2.28 16 28 C -0.04 -0.89 9.58 22.50 0.22 -0.68 16 29 C 0.12 3.92 6.35 86.86 0.55 4.47 16 30 H 0.24 15.71 6.77 -92.71 -0.63 15.08 16 31 H 0.36 19.35 6.50 -92.71 -0.60 18.75 16 32 H 0.02 0.91 7.96 -2.39 -0.02 0.89 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16 35 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.03 6.73 -2.39 -0.02 1.02 16 37 H 0.11 1.07 6.74 -2.39 -0.02 1.06 16 38 H 0.19 1.70 2.73 -8.78 -0.02 1.68 16 39 H 0.17 0.91 6.68 -2.92 -0.02 0.89 16 40 H 0.18 1.74 6.99 -2.91 -0.02 1.72 16 41 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 43 H 0.19 1.11 6.99 -2.91 -0.02 1.09 16 44 H 0.15 1.87 6.68 -2.91 -0.02 1.85 16 45 H 0.13 3.06 7.66 -2.91 -0.02 3.03 16 46 H 0.04 1.70 7.99 -2.39 -0.02 1.68 16 47 H 0.06 2.18 7.91 -2.38 -0.02 2.16 16 Total: -1.00 -82.87 380.50 3.97 -78.90 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.53 Total: 28.01 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.86 Total: -8.00 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -5.40 Total: -129.55 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.07 Total: -24.18 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Total: -82.87 3.97 -78.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317327248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.231 kcal (2) G-P(sol) polarization free energy of solvation -82.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds