Wall clock time and date at job start Tue Mar 31 2020 22:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47046 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99777 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.17303 * 7 2 1 9 9 N 1.36935 * 120.00391 * 343.16653 * 7 2 1 10 10 C 1.46926 * 120.63241 * 151.92989 * 9 7 2 11 11 C 1.53189 * 108.89548 * 126.46715 * 10 9 7 12 12 C 1.53049 * 109.31006 * 54.56312 * 11 10 9 13 13 N 1.46900 * 109.45421 * 178.61271 * 12 11 10 14 14 C 1.46903 * 110.99372 * 204.99896 * 13 12 11 15 15 C 1.53000 * 109.46658 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47673 * 305.00436 * 15 14 13 17 17 O 1.42905 * 109.47226 * 65.00517 * 15 14 13 18 18 C 1.53006 * 109.47009 * 185.00276 * 15 14 13 19 19 N 1.46500 * 109.46981 * 175.00652 * 18 15 14 20 20 C 1.34947 * 126.04249 * 124.72069 * 19 18 15 21 21 C 1.35313 * 107.75021 * 179.83287 * 20 19 18 22 22 N 1.48021 * 126.04115 * 180.15882 * 21 20 19 23 23 O 1.21797 * 119.99646 * 180.33285 * 22 21 20 24 24 O 1.21796 * 120.00037 * 0.32831 * 22 21 20 25 25 C 1.39878 * 107.91601 * 0.42061 * 21 20 19 26 26 N 1.30832 * 108.20132 * 359.73671 * 25 21 20 27 27 C 1.53038 * 109.53915 * 298.63665 * 12 11 10 28 28 C 1.46960 * 120.65281 * 331.75570 * 9 7 2 29 29 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58436 * 6.60522 * 10 9 7 31 31 H 1.08996 * 109.58760 * 246.33067 * 10 9 7 32 32 H 1.09001 * 109.49772 * 174.51715 * 11 10 9 33 33 H 1.08999 * 109.49563 * 294.61749 * 11 10 9 34 34 H 1.08997 * 109.45734 * 58.65662 * 12 11 10 35 35 H 1.00897 * 111.00023 * 81.05451 * 13 12 11 36 36 H 1.09000 * 109.47675 * 300.00174 * 14 13 12 37 37 H 1.09001 * 109.47394 * 60.01028 * 14 13 12 38 38 H 0.96697 * 113.99827 * 59.99481 * 17 15 14 39 39 H 1.08996 * 109.46844 * 295.00006 * 18 15 14 40 40 H 1.08998 * 109.47066 * 55.00232 * 18 15 14 41 41 H 1.08007 * 126.12028 * 359.97438 * 20 19 18 42 42 H 1.08004 * 125.89608 * 179.75721 * 25 21 20 43 43 H 1.08995 * 109.49486 * 181.31850 * 27 12 11 44 44 H 1.08997 * 109.49624 * 301.38055 * 27 12 11 45 45 H 1.08994 * 109.46893 * 113.74819 * 28 9 7 46 46 H 1.09005 * 109.71148 * 353.45478 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2223 -0.2702 9 7 1.3696 -2.3625 0.3445 10 6 1.8155 -3.6530 -0.1982 11 6 2.0656 -4.6198 0.9635 12 6 0.8080 -4.7040 1.8317 13 7 1.0329 -5.6556 2.9278 14 6 -0.2376 -6.2149 3.4083 15 6 0.0367 -7.1988 4.5475 16 1 0.7453 -7.9557 4.2112 17 8 0.5857 -6.4947 5.6632 18 6 -1.2715 -7.8741 4.9642 19 7 -0.9918 -8.9009 5.9711 20 6 -1.5527 -8.9859 7.1955 21 6 -1.0329 -10.0719 7.8130 22 7 -1.3703 -10.5444 9.1745 23 8 -0.8285 -11.5373 9.6262 24 8 -2.1897 -9.9403 9.8432 25 6 -0.1158 -10.6657 6.9395 26 7 -0.0905 -9.9646 5.8351 27 6 0.4931 -3.3232 2.4116 28 6 0.2252 -2.3417 1.2663 29 1 -0.4849 0.8401 -0.0004 30 1 2.7377 -3.5132 -0.7622 31 1 1.0450 -4.0600 -0.8529 32 1 2.3026 -5.6082 0.5696 33 1 2.8993 -4.2578 1.5650 34 1 -0.0310 -5.0424 1.2236 35 1 1.5461 -5.2240 3.6818 36 1 -0.8756 -5.4088 3.7707 37 1 -0.7379 -6.7349 2.5913 38 1 0.0078 -5.8041 6.0156 39 1 -1.9475 -7.1290 5.3833 40 1 -1.7353 -8.3365 4.0929 41 1 -2.2870 -8.3095 7.6078 42 1 0.4699 -11.5503 7.1416 43 1 -0.3890 -3.3887 3.0485 44 1 1.3414 -2.9737 3.0000 45 1 -0.6768 -2.6406 0.7324 46 1 0.0957 -1.3370 1.6689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325840157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:38 Heat of formation + Delta-G solvation = 48.267463 kcal Electronic energy + Delta-G solvation = -28833.656660 eV Core-core repulsion = 24571.132660 eV Total energy + Delta-G solvation = -4262.524000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -42.79703 -41.71226 -38.97831 -37.71994 -36.74833 -34.94029 -34.22262 -32.39829 -31.76274 -30.70431 -29.92318 -29.09396 -26.74074 -25.57703 -24.33392 -22.68109 -22.15473 -22.08745 -21.70518 -21.39614 -19.53205 -19.36582 -18.73887 -17.83608 -17.49940 -16.96286 -16.83870 -16.56552 -15.88242 -15.34551 -14.98002 -14.74316 -14.61741 -14.02262 -13.93021 -13.79505 -13.59103 -13.29033 -13.12704 -12.83029 -12.37553 -12.21337 -12.15570 -11.81896 -11.66753 -11.49136 -11.38552 -11.32687 -11.16187 -10.93866 -10.81393 -10.76665 -10.52857 -10.46373 -10.22562 -10.12903 -9.92373 -9.78136 -9.59897 -8.58306 -8.24858 -6.74350 -5.86346 -3.28556 -0.08813 0.81982 0.95652 1.70514 1.84762 3.31344 3.33408 3.39946 3.42258 3.64706 3.72962 3.88352 4.05575 4.30420 4.43663 4.46421 4.49603 4.53979 4.63110 4.86813 5.15962 5.26422 5.31610 5.35914 5.46751 5.50529 5.61220 5.71751 5.80002 6.04185 6.10078 6.21541 6.31125 6.43628 6.47708 6.49330 6.55145 6.73962 6.91885 7.04767 7.16360 7.22187 7.41803 7.43872 7.54844 7.73544 8.38023 9.14339 9.77762 10.34304 11.22435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.001719 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.965690 B =16288.313964 C =16704.277445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.144 3.856 11 C -0.118 4.118 12 C 0.095 3.905 13 N -0.683 5.683 14 C 0.031 3.969 15 C 0.097 3.903 16 H 0.125 0.875 17 O -0.550 6.550 18 C 0.092 3.908 19 N -0.334 5.334 20 C 0.156 3.844 21 C -0.196 4.196 22 N 0.071 4.929 23 O -0.165 6.165 24 O -0.178 6.178 25 C 0.113 3.887 26 N -0.259 5.259 27 C -0.167 4.167 28 C 0.175 3.825 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.345 0.655 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.373 0.627 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.204 0.796 42 H 0.210 0.790 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 -18.374 12.583 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.158 4.158 12 C -0.014 4.014 13 N -0.313 5.313 14 C -0.099 4.099 15 C 0.036 3.964 16 H 0.143 0.857 17 O -0.355 6.355 18 C -0.029 4.029 19 N -0.112 5.112 20 C 0.001 3.999 21 C -0.294 4.294 22 N 0.587 4.413 23 O -0.379 6.379 24 O -0.388 6.388 25 C -0.077 4.077 26 N -0.078 5.078 27 C -0.208 4.208 28 C 0.048 3.952 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.220 0.780 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.220 0.780 42 H 0.226 0.774 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.336 -18.698 10.088 21.684 hybrid contribution -1.059 1.860 1.714 2.742 sum -5.395 -16.838 11.802 21.258 Atomic orbital electron populations 1.70040 1.05286 1.25386 1.54206 1.25052 0.95309 0.98470 1.00921 0.86226 0.79431 0.83880 0.77286 1.20203 1.21677 1.21590 1.19243 0.92589 0.84791 1.41412 0.91605 1.44054 1.35787 1.01660 1.50000 1.20927 0.97707 0.86733 0.92883 1.21984 0.96642 0.99116 0.98011 1.21541 0.98528 0.89706 0.91576 1.60645 1.17727 1.39670 1.13291 1.22513 0.93420 0.96902 0.97105 1.22412 0.93428 0.94467 0.86060 0.85686 1.86736 1.47610 1.52919 1.48226 1.22967 1.00400 0.88302 0.91186 1.48749 1.29556 1.21433 1.11423 1.22355 0.96034 0.96014 0.85534 1.21041 1.13960 1.05446 0.88935 1.42460 0.98529 0.99413 1.00928 1.94556 1.53773 1.15498 1.74085 1.94551 1.28632 1.57588 1.58064 1.23999 0.95508 0.99605 0.88561 1.77785 1.10625 0.98115 1.21267 1.22852 0.99816 0.97530 1.00553 1.20681 0.88728 0.97975 0.87787 0.93714 0.92615 0.96576 0.92519 0.92430 0.91345 0.83572 0.94483 0.89865 0.78008 0.86958 0.86921 0.77954 0.77360 0.93978 0.92487 0.96586 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.33 3.00 -172.29 -0.52 -14.84 16 10 C 0.14 2.92 6.51 -3.71 -0.02 2.90 16 11 C -0.12 -1.97 5.69 -26.61 -0.15 -2.12 16 12 C 0.10 1.43 2.43 -67.67 -0.16 1.27 16 13 N -0.68 -8.19 6.25 -106.68 -0.67 -8.86 16 14 C 0.03 0.26 5.16 -3.82 -0.02 0.24 16 15 C 0.10 0.67 3.32 -26.73 -0.09 0.58 16 16 H 0.13 1.17 8.05 -51.93 -0.42 0.75 16 17 O -0.55 -4.43 12.80 -35.23 -0.45 -4.88 16 18 C 0.09 0.38 6.15 -4.04 -0.02 0.35 16 19 N -0.33 -2.15 3.63 -61.36 -0.22 -2.37 16 20 C 0.16 0.94 11.13 -17.22 -0.19 0.75 16 21 C -0.20 -1.65 7.11 -80.37 -0.57 -2.22 16 22 N 0.07 0.76 4.45 33.75 0.15 0.91 16 23 O -0.16 -1.91 19.05 -29.46 -0.56 -2.47 16 24 O -0.18 -2.01 19.02 -29.46 -0.56 -2.57 16 25 C 0.11 0.88 11.75 -17.36 -0.20 0.68 16 26 N -0.26 -2.23 12.34 30.63 0.38 -1.85 16 27 C -0.17 -2.86 5.33 -26.61 -0.14 -3.00 16 28 C 0.17 3.95 5.30 -3.69 -0.02 3.93 16 29 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.06 7.80 -51.93 -0.40 0.65 16 35 H 0.35 4.31 8.04 -39.29 -0.32 4.00 16 36 H 0.04 0.29 7.41 -51.93 -0.38 -0.10 16 37 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 38 H 0.37 1.70 9.05 45.56 0.41 2.11 16 39 H 0.11 0.13 8.07 -51.93 -0.42 -0.29 16 40 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.20 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.21 1.11 8.06 -52.48 -0.42 0.68 16 43 H 0.04 0.63 7.42 -51.93 -0.39 0.25 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -33.21 386.08 -8.86 -42.07 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.99 Total: 1.41 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.83 Total: -3.60 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.26 Total: -52.04 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -1.57 Total: -9.92 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.21 -8.86 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325840157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.340 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds