Wall clock time and date at job start Tue Mar 31 2020 22:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47046 * 299.99623 * 3 2 1 6 6 H 1.48496 * 109.47392 * 59.99777 * 3 2 1 7 7 C 1.38810 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.17303 * 7 2 1 9 9 N 1.36935 * 120.00391 * 343.16653 * 7 2 1 10 10 C 1.46926 * 120.63241 * 151.92989 * 9 7 2 11 11 C 1.53189 * 108.89548 * 126.46715 * 10 9 7 12 12 C 1.53049 * 109.31006 * 54.56312 * 11 10 9 13 13 N 1.46900 * 109.45421 * 178.61271 * 12 11 10 14 14 C 1.46903 * 110.99372 * 204.99896 * 13 12 11 15 15 C 1.53000 * 109.46658 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47673 * 305.00436 * 15 14 13 17 17 O 1.42905 * 109.47226 * 65.00517 * 15 14 13 18 18 C 1.53006 * 109.47009 * 185.00276 * 15 14 13 19 19 N 1.46500 * 109.46981 * 175.00652 * 18 15 14 20 20 C 1.34947 * 126.04249 * 124.72069 * 19 18 15 21 21 C 1.35313 * 107.75021 * 179.83287 * 20 19 18 22 22 N 1.48021 * 126.04115 * 180.15882 * 21 20 19 23 23 O 1.21797 * 119.99646 * 180.33285 * 22 21 20 24 24 O 1.21796 * 120.00037 * 0.32831 * 22 21 20 25 25 C 1.39878 * 107.91601 * 0.42061 * 21 20 19 26 26 N 1.30832 * 108.20132 * 359.73671 * 25 21 20 27 27 C 1.53038 * 109.53915 * 298.63665 * 12 11 10 28 28 C 1.46960 * 120.65281 * 331.75570 * 9 7 2 29 29 H 0.97000 * 119.99586 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58436 * 6.60522 * 10 9 7 31 31 H 1.08996 * 109.58760 * 246.33067 * 10 9 7 32 32 H 1.09001 * 109.49772 * 174.51715 * 11 10 9 33 33 H 1.08999 * 109.49563 * 294.61749 * 11 10 9 34 34 H 1.08997 * 109.45734 * 58.65662 * 12 11 10 35 35 H 1.00897 * 111.00023 * 81.05451 * 13 12 11 36 36 H 1.09000 * 109.47675 * 300.00174 * 14 13 12 37 37 H 1.09001 * 109.47394 * 60.01028 * 14 13 12 38 38 H 0.96697 * 113.99827 * 59.99481 * 17 15 14 39 39 H 1.08996 * 109.46844 * 295.00006 * 18 15 14 40 40 H 1.08998 * 109.47066 * 55.00232 * 18 15 14 41 41 H 1.08007 * 126.12028 * 359.97438 * 20 19 18 42 42 H 1.08004 * 125.89608 * 179.75721 * 25 21 20 43 43 H 1.08995 * 109.49486 * 181.31850 * 27 12 11 44 44 H 1.08997 * 109.49624 * 301.38055 * 27 12 11 45 45 H 1.08994 * 109.46893 * 113.74819 * 28 9 7 46 46 H 1.09005 * 109.71148 * 353.45478 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0555 -1.2223 -0.2702 9 7 1.3696 -2.3625 0.3445 10 6 1.8155 -3.6530 -0.1982 11 6 2.0656 -4.6198 0.9635 12 6 0.8080 -4.7040 1.8317 13 7 1.0329 -5.6556 2.9278 14 6 -0.2376 -6.2149 3.4083 15 6 0.0367 -7.1988 4.5475 16 1 0.7453 -7.9557 4.2112 17 8 0.5857 -6.4947 5.6632 18 6 -1.2715 -7.8741 4.9642 19 7 -0.9918 -8.9009 5.9711 20 6 -1.5527 -8.9859 7.1955 21 6 -1.0329 -10.0719 7.8130 22 7 -1.3703 -10.5444 9.1745 23 8 -0.8285 -11.5373 9.6262 24 8 -2.1897 -9.9403 9.8432 25 6 -0.1158 -10.6657 6.9395 26 7 -0.0905 -9.9646 5.8351 27 6 0.4931 -3.3232 2.4116 28 6 0.2252 -2.3417 1.2663 29 1 -0.4849 0.8401 -0.0004 30 1 2.7377 -3.5132 -0.7622 31 1 1.0450 -4.0600 -0.8529 32 1 2.3026 -5.6082 0.5696 33 1 2.8993 -4.2578 1.5650 34 1 -0.0310 -5.0424 1.2236 35 1 1.5461 -5.2240 3.6818 36 1 -0.8756 -5.4088 3.7707 37 1 -0.7379 -6.7349 2.5913 38 1 0.0078 -5.8041 6.0156 39 1 -1.9475 -7.1290 5.3833 40 1 -1.7353 -8.3365 4.0929 41 1 -2.2870 -8.3095 7.6078 42 1 0.4699 -11.5503 7.1416 43 1 -0.3890 -3.3887 3.0485 44 1 1.3414 -2.9737 3.0000 45 1 -0.6768 -2.6406 0.7324 46 1 0.0957 -1.3370 1.6689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325840157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:38 Heat of formation + Delta-G solvation = 23.593746 kcal Electronic energy + Delta-G solvation = -28834.726593 eV Core-core repulsion = 24571.132660 eV Total energy + Delta-G solvation = -4263.593933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.41582 -42.36634 -39.93351 -38.80158 -37.53394 -36.29972 -34.71406 -33.99510 -32.34766 -31.89793 -31.47900 -30.18564 -27.65793 -26.64552 -25.59836 -23.83965 -23.36371 -22.86159 -22.57651 -22.22447 -20.86546 -20.13228 -19.48955 -18.84094 -18.56028 -17.99900 -17.36151 -17.10842 -16.89635 -16.63646 -16.09782 -15.62635 -15.44110 -15.34281 -15.25582 -14.84677 -14.71770 -14.47310 -14.18879 -13.89696 -13.52836 -13.20835 -13.02820 -12.95463 -12.80887 -12.61972 -12.59831 -12.42143 -12.26040 -12.22512 -12.13916 -11.98160 -11.95478 -11.79681 -11.59458 -11.39799 -11.18412 -10.94752 -10.58854 -10.43536 -9.29813 -8.68981 -7.90289 -5.35166 -0.80713 0.23889 0.40662 1.19972 1.23406 1.43389 1.45984 1.56126 2.48911 2.79878 3.14166 3.25471 3.29394 3.40390 3.60754 3.68702 3.78728 3.85400 3.96908 4.00155 4.05164 4.17466 4.28330 4.36147 4.44075 4.53601 4.67334 4.69824 4.71933 4.86888 4.94447 4.94858 5.08323 5.20471 5.24197 5.26054 5.37470 5.40946 5.48968 5.62598 5.71568 5.95890 6.10828 6.37429 6.45844 6.59559 6.71432 7.13426 7.84936 8.35603 9.15848 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.001719 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.965690 B =16288.313964 C =16704.277445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.140 3.860 11 C -0.107 4.107 12 C 0.109 3.891 13 N -0.683 5.683 14 C 0.031 3.969 15 C 0.109 3.891 16 H 0.098 0.902 17 O -0.571 6.571 18 C 0.091 3.909 19 N -0.330 5.330 20 C 0.176 3.824 21 C -0.218 4.218 22 N 0.075 4.925 23 O -0.200 6.200 24 O -0.188 6.188 25 C 0.111 3.889 26 N -0.287 5.287 27 C -0.149 4.149 28 C 0.179 3.821 29 H 0.250 0.750 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.344 0.656 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.389 0.611 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.241 0.759 42 H 0.222 0.778 43 H 0.068 0.932 44 H 0.047 0.953 45 H -0.003 1.003 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 -18.743 13.164 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.014 3.986 11 C -0.146 4.146 12 C -0.001 4.001 13 N -0.314 5.314 14 C -0.099 4.099 15 C 0.048 3.952 16 H 0.116 0.884 17 O -0.378 6.378 18 C -0.028 4.028 19 N -0.107 5.107 20 C 0.020 3.980 21 C -0.317 4.317 22 N 0.585 4.415 23 O -0.407 6.407 24 O -0.398 6.398 25 C -0.078 4.078 26 N -0.106 5.106 27 C -0.190 4.190 28 C 0.053 3.947 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.257 0.743 42 H 0.239 0.761 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.015 0.985 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.950 -19.134 10.695 22.472 hybrid contribution -0.868 1.998 1.440 2.611 sum -5.818 -17.136 12.135 21.789 Atomic orbital electron populations 1.70178 1.06540 1.25742 1.55573 1.25765 0.96082 1.01377 1.01348 0.85249 0.78607 0.80008 0.76846 1.19313 1.21875 1.21571 1.19529 0.92739 0.86174 1.40765 0.91921 1.44328 1.35985 1.02291 1.50894 1.21067 0.97223 0.85947 0.94342 1.21815 0.97244 0.98788 0.96790 1.21266 0.97455 0.89033 0.92333 1.60554 1.19909 1.38069 1.12837 1.22615 0.91796 0.97530 0.97954 1.22122 0.94147 0.93476 0.85409 0.88396 1.86707 1.48935 1.53751 1.48457 1.23190 0.99340 0.88530 0.91779 1.48939 1.28806 1.21073 1.11863 1.22924 0.95268 0.95153 0.84670 1.21209 1.15502 1.07010 0.87948 1.42705 0.98078 0.99064 1.01668 1.94548 1.54657 1.16487 1.75032 1.94521 1.28898 1.57508 1.58910 1.24303 0.95332 0.99925 0.88263 1.77768 1.11921 0.99212 1.21697 1.22632 1.00563 0.97284 0.98524 1.20522 0.87727 0.97507 0.88955 0.94105 0.93107 0.96665 0.90504 0.93410 0.91133 0.83715 0.92918 0.88977 0.76169 0.82918 0.85402 0.74330 0.76138 0.91321 0.93457 0.98456 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.08 11.20 21.65 0.24 -53.84 16 2 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 3 Si 0.96 44.25 29.59 68.60 2.03 46.28 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 8 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -29.86 3.00 -699.02 -2.10 -31.96 16 10 C 0.14 5.62 6.51 86.36 0.56 6.18 16 11 C -0.11 -3.40 5.69 30.67 0.17 -3.23 16 12 C 0.11 3.03 2.43 44.94 0.11 3.14 16 13 N -0.68 -14.47 6.25 -491.41 -3.07 -17.54 16 14 C 0.03 0.40 5.16 86.30 0.44 0.84 16 15 C 0.11 1.15 3.32 30.60 0.10 1.25 16 16 H 0.10 1.63 8.05 -2.39 -0.02 1.61 16 17 O -0.57 -7.43 12.80 -148.98 -1.91 -9.34 16 18 C 0.09 0.36 6.15 86.38 0.53 0.89 16 19 N -0.33 -3.20 3.63 -348.05 -1.26 -4.46 16 20 C 0.18 1.55 11.13 83.54 0.93 2.48 16 21 C -0.22 -3.33 7.11 36.10 0.26 -3.08 16 22 N 0.08 1.56 4.45 -47.12 -0.21 1.35 16 23 O -0.20 -4.73 19.05 18.89 0.36 -4.37 16 24 O -0.19 -4.08 19.02 18.89 0.36 -3.72 16 25 C 0.11 1.63 11.75 85.24 1.00 2.63 16 26 N -0.29 -4.45 12.34 -57.02 -0.70 -5.16 16 27 C -0.15 -4.90 5.33 30.67 0.16 -4.73 16 28 C 0.18 8.15 5.30 86.36 0.46 8.61 16 29 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.98 7.80 -2.39 -0.02 1.96 16 35 H 0.34 7.68 8.04 -89.70 -0.72 6.96 16 36 H 0.05 0.56 7.41 -2.39 -0.02 0.54 16 37 H 0.09 1.08 8.05 -2.39 -0.02 1.06 16 38 H 0.39 2.05 9.05 -74.06 -0.67 1.38 16 39 H 0.15 -0.57 8.07 -2.39 -0.02 -0.59 16 40 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.24 0.15 8.06 -2.91 -0.02 0.12 16 42 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.07 1.88 7.42 -2.39 -0.02 1.86 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.05 2.62 6.07 -2.38 -0.01 2.61 16 Total: -1.00 -74.76 386.08 -0.68 -75.44 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -0.37 Total: 8.11 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.96 Total: -0.80 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -7.10 Total: -111.60 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.19 Total: -17.43 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -74.76 -0.68 -75.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325840157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.036 kcal (2) G-P(sol) polarization free energy of solvation -74.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds