Wall clock time and date at job start Tue Mar 31 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48498 * 109.47270 * 270.00145 * 3 2 1 5 5 H 1.48498 * 109.47039 * 30.00060 * 3 2 1 6 6 H 1.48498 * 109.46945 * 150.00076 * 3 2 1 7 7 C 1.37877 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99949 * 359.97438 * 7 2 1 10 10 O 1.42899 * 113.38777 * 313.08105 * 9 7 2 11 11 C 1.53516 * 114.16822 * 179.97438 * 9 7 2 12 12 N 1.47473 * 87.93377 * 220.33122 * 11 9 7 13 13 C 1.46901 * 111.00184 * 138.70670 * 12 11 9 14 14 C 1.50698 * 109.47327 * 169.99870 * 13 12 11 15 15 N 1.30770 * 125.86163 * 270.03730 * 14 13 12 16 16 N 1.40007 * 108.22896 * 179.97438 * 15 14 13 17 17 C 1.40176 * 126.04646 * 180.02562 * 16 15 14 18 18 C 1.38838 * 120.06523 * 144.69168 * 17 16 15 19 19 C 1.38128 * 119.93250 * 179.70109 * 18 17 16 20 20 C 1.38279 * 120.06294 * 0.58486 * 19 18 17 21 21 C 1.38273 * 120.13673 * 359.68905 * 20 19 18 22 22 C 1.38119 * 120.06686 * 0.02562 * 21 20 19 23 23 C 1.35490 * 107.90294 * 0.02562 * 16 15 14 24 24 C 1.35144 * 107.71529 * 0.02562 * 23 16 15 25 25 C 1.51369 * 110.23870 * 179.97438 * 24 23 16 26 26 C 1.54713 * 105.01983 * 16.97408 * 25 24 23 27 27 C 1.51313 * 141.97333 * 180.02562 * 23 16 15 28 28 C 1.47480 * 87.83882 * 27.01055 * 12 11 9 29 29 H 0.96997 * 119.99987 * 359.97438 * 1 2 3 30 30 H 0.96698 * 113.99780 * 46.92345 * 10 9 7 31 31 H 1.09006 * 113.47288 * 105.56517 * 11 9 7 32 32 H 1.08997 * 113.47821 * 335.10427 * 11 9 7 33 33 H 1.09004 * 109.47103 * 49.99686 * 13 12 11 34 34 H 1.09001 * 109.47095 * 290.00183 * 13 12 11 35 35 H 1.07997 * 120.03318 * 359.97438 * 18 17 16 36 36 H 1.07998 * 119.96394 * 180.31660 * 19 18 17 37 37 H 1.08000 * 119.92881 * 179.70248 * 20 19 18 38 38 H 1.08005 * 119.97009 * 180.02562 * 21 20 19 39 39 H 1.08006 * 120.03514 * 180.02562 * 22 21 20 40 40 H 1.09002 * 110.33259 * 135.82351 * 25 24 23 41 41 H 1.09004 * 110.33161 * 257.95077 * 25 24 23 42 42 H 1.09004 * 111.00602 * 216.10260 * 26 25 24 43 43 H 1.09004 * 110.96455 * 92.36701 * 26 25 24 44 44 H 1.09002 * 110.33767 * 281.96167 * 27 23 16 45 45 H 1.08996 * 110.33675 * 44.09826 * 27 23 16 46 46 H 1.09005 * 113.47286 * 87.75248 * 28 12 11 47 47 H 1.08993 * 113.48236 * 218.22306 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1920 -2.5426 0.9578 11 6 2.1498 -3.7437 -0.0018 12 7 1.2070 -4.3579 -0.9552 13 6 1.9247 -5.0854 -2.0105 14 6 0.9441 -5.8971 -2.8170 15 7 0.5821 -7.1290 -2.5686 16 7 -0.3412 -7.5197 -3.5458 17 6 -0.9696 -8.7696 -3.6340 18 6 -2.2808 -8.8588 -4.0817 19 6 -2.8954 -10.0925 -4.1734 20 6 -2.2100 -11.2366 -3.8083 21 6 -0.9060 -11.1504 -3.3567 22 6 -0.2841 -9.9203 -3.2684 23 6 -0.5198 -6.4760 -4.3911 24 6 0.2638 -5.4615 -3.9632 25 6 0.1083 -4.2607 -4.8716 26 6 -1.1965 -4.5215 -5.6610 27 6 -1.2836 -6.0631 -5.6303 28 6 0.8546 -2.9960 -1.3979 29 1 -0.4850 0.8400 0.0004 30 1 -0.3725 -1.7575 0.9561 31 1 2.1872 -4.2532 0.9611 32 1 3.1389 -3.5648 -0.4233 33 1 2.6607 -5.7498 -1.5578 34 1 2.4305 -4.3736 -2.6630 35 1 -2.8182 -7.9650 -4.3622 36 1 -3.9136 -10.1630 -4.5264 37 1 -2.6942 -12.1996 -3.8763 38 1 -0.3730 -12.0459 -3.0726 39 1 0.7346 -9.8536 -2.9159 40 1 0.0175 -3.3487 -4.2815 41 1 0.9569 -4.1880 -5.5518 42 1 -1.1134 -4.1565 -6.6847 43 1 -2.0531 -4.0730 -5.1576 44 1 -0.8186 -6.4865 -6.5206 45 1 -2.3232 -6.3824 -5.5585 46 1 1.4981 -2.6174 -2.1921 47 1 -0.2056 -2.8717 -1.6183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412972583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:39 Heat of formation + Delta-G solvation = 108.060596 kcal Electronic energy + Delta-G solvation = -29031.470648 eV Core-core repulsion = 25182.388735 eV Total energy + Delta-G solvation = -3849.081912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77242 -39.32527 -38.95656 -36.28935 -34.60047 -33.44847 -32.02865 -31.28989 -30.32228 -28.50555 -28.17920 -27.25819 -25.90141 -24.83826 -23.15677 -22.93236 -22.02339 -21.32673 -19.56591 -19.21104 -18.59188 -17.62191 -17.21891 -16.45482 -16.07747 -15.23604 -15.09516 -14.94323 -14.64415 -14.31294 -14.18618 -14.08382 -13.78153 -13.67409 -13.31278 -12.90237 -12.78711 -12.72235 -12.53091 -12.24412 -11.96247 -11.81106 -11.49231 -11.46031 -11.24764 -11.13720 -11.11924 -11.09061 -10.86709 -10.65218 -10.38433 -10.23409 -9.92000 -9.85727 -9.27773 -9.23956 -8.68961 -8.59835 -8.16671 -7.90563 -7.85387 -6.25240 -4.34928 0.77372 1.06938 2.06636 2.33515 2.86655 3.19899 3.27777 3.31326 3.49109 4.20997 4.26195 4.48294 4.61115 4.63985 4.78301 4.82934 4.93454 4.94369 5.03565 5.09118 5.13659 5.23387 5.25039 5.43119 5.53379 5.61793 5.64519 5.68636 5.80661 5.85802 5.91975 5.99954 6.05720 6.08786 6.13677 6.19505 6.20692 6.24188 6.33041 6.35483 6.44778 6.52668 6.73415 6.81517 7.09351 7.20150 7.28765 7.37697 7.78331 7.86427 7.96640 8.05604 8.67315 9.35068 9.72310 10.80693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002678 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.711235 B =10452.407508 C =11127.514379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.570 6.570 11 C 0.004 3.996 12 N -0.463 5.463 13 C 0.092 3.908 14 C 0.134 3.866 15 N -0.271 5.271 16 N -0.319 5.319 17 C 0.167 3.833 18 C -0.133 4.133 19 C -0.098 4.098 20 C -0.130 4.130 21 C -0.100 4.100 22 C -0.116 4.116 23 C 0.045 3.955 24 C -0.229 4.229 25 C -0.048 4.048 26 C -0.114 4.114 27 C -0.043 4.043 28 C -0.017 4.017 29 H 0.271 0.729 30 H 0.390 0.610 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -16.074 -14.013 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.206 3.794 10 O -0.382 6.382 11 C -0.124 4.124 12 N -0.186 5.186 13 C -0.038 4.038 14 C -0.034 4.034 15 N -0.089 5.089 16 N -0.094 5.094 17 C 0.075 3.925 18 C -0.154 4.154 19 C -0.117 4.117 20 C -0.149 4.149 21 C -0.119 4.119 22 C -0.136 4.136 23 C -0.079 4.079 24 C -0.239 4.239 25 C -0.086 4.086 26 C -0.152 4.152 27 C -0.082 4.082 28 C -0.146 4.146 29 H 0.081 0.919 30 H 0.245 0.755 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.221 -18.091 -12.891 22.611 hybrid contribution 0.718 2.393 -0.982 2.684 sum -3.503 -15.697 -13.873 21.240 Atomic orbital electron populations 1.69306 1.06106 1.27779 1.50638 1.25066 0.94972 0.99654 0.93449 0.86404 0.79852 0.82398 0.78246 1.20436 1.20944 1.19666 1.21575 0.93663 0.90479 1.51387 0.91518 1.19349 0.85084 0.90525 0.84461 1.86042 1.45061 1.47980 1.59104 1.24088 0.95303 0.96438 0.96596 1.68937 1.26643 1.13924 1.09060 1.21075 0.92623 0.96278 0.93843 1.21860 0.96980 0.91255 0.93274 1.77544 1.07675 1.14589 1.09142 1.45184 1.34592 1.08676 1.20915 1.17548 0.91543 0.82539 1.00915 1.21022 0.92429 0.99079 1.02859 1.20980 0.99950 0.91514 0.99258 1.21205 0.94925 0.98698 1.00070 1.21061 0.95088 0.96997 0.98748 1.21040 1.00771 0.90823 1.00937 1.21770 1.01488 0.88300 0.96300 1.20891 1.04768 0.98317 0.99963 1.20495 0.96970 0.95561 0.95564 1.22428 0.98605 0.93214 1.00912 1.20760 0.98748 0.96796 0.91857 1.24760 1.00862 0.87230 1.01726 0.91859 0.75486 0.90939 0.91634 0.90301 0.91878 0.85380 0.85170 0.85549 0.85216 0.84952 0.90269 0.90958 0.90002 0.90393 0.89729 0.90723 0.92157 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.02 11.02 55.43 0.61 -23.41 16 2 C 0.07 1.84 5.40 -17.82 -0.10 1.75 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -14.11 8.68 -34.44 -0.30 -14.41 16 8 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.25 6.34 1.57 -91.24 -0.14 6.20 16 10 O -0.57 -15.85 13.54 -35.23 -0.48 -16.33 16 11 C 0.00 0.10 7.09 -7.55 -0.05 0.05 16 12 N -0.46 -10.19 6.32 -246.08 -1.55 -11.74 16 13 C 0.09 1.72 5.38 -4.98 -0.03 1.69 16 14 C 0.13 2.51 6.81 -82.30 -0.56 1.95 16 15 N -0.27 -5.16 12.33 33.73 0.42 -4.74 16 16 N -0.32 -5.25 3.74 -6.77 -0.03 -5.28 16 17 C 0.17 2.32 6.40 -83.60 -0.54 1.79 16 18 C -0.13 -1.52 9.48 -39.40 -0.37 -1.89 16 19 C -0.10 -0.87 10.04 -39.61 -0.40 -1.27 16 20 C -0.13 -1.09 10.04 -39.55 -0.40 -1.49 16 21 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 22 C -0.12 -1.44 9.76 -39.40 -0.38 -1.82 16 23 C 0.04 0.68 6.96 -81.78 -0.57 0.11 16 24 C -0.23 -3.80 6.83 -104.65 -0.72 -4.51 16 25 C -0.05 -0.64 6.79 -26.65 -0.18 -0.82 16 26 C -0.11 -1.18 7.14 -25.08 -0.18 -1.36 16 27 C -0.04 -0.45 6.57 -26.83 -0.18 -0.63 16 28 C -0.02 -0.39 7.13 -7.54 -0.05 -0.44 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.39 10.95 6.34 45.56 0.29 11.24 16 31 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.07 1.33 7.87 -51.93 -0.41 0.92 16 33 H 0.08 1.37 8.08 -51.93 -0.42 0.96 16 34 H 0.06 1.10 7.30 -51.93 -0.38 0.72 16 35 H 0.13 1.35 6.43 -52.49 -0.34 1.01 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.68 6.90 -51.93 -0.36 0.32 16 46 H 0.06 1.35 7.37 -51.93 -0.38 0.96 16 47 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -31.29 385.56 -11.97 -43.26 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -6.19 Total: 13.71 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -5.54 Total: -16.46 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.55 Total: -45.17 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.48 Total: -16.33 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.29 -11.97 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412972583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.319 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds