Wall clock time and date at job start Tue Mar 31 2020 22:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48498 * 109.47270 * 270.00145 * 3 2 1 5 5 H 1.48498 * 109.47039 * 30.00060 * 3 2 1 6 6 H 1.48498 * 109.46945 * 150.00076 * 3 2 1 7 7 C 1.37877 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99949 * 359.97438 * 7 2 1 10 10 O 1.42899 * 113.38777 * 313.08105 * 9 7 2 11 11 C 1.53516 * 114.16822 * 179.97438 * 9 7 2 12 12 N 1.47473 * 87.93377 * 220.33122 * 11 9 7 13 13 C 1.46901 * 111.00184 * 138.70670 * 12 11 9 14 14 C 1.50698 * 109.47327 * 169.99870 * 13 12 11 15 15 N 1.30770 * 125.86163 * 270.03730 * 14 13 12 16 16 N 1.40007 * 108.22896 * 179.97438 * 15 14 13 17 17 C 1.40176 * 126.04646 * 180.02562 * 16 15 14 18 18 C 1.38838 * 120.06523 * 144.69168 * 17 16 15 19 19 C 1.38128 * 119.93250 * 179.70109 * 18 17 16 20 20 C 1.38279 * 120.06294 * 0.58486 * 19 18 17 21 21 C 1.38273 * 120.13673 * 359.68905 * 20 19 18 22 22 C 1.38119 * 120.06686 * 0.02562 * 21 20 19 23 23 C 1.35490 * 107.90294 * 0.02562 * 16 15 14 24 24 C 1.35144 * 107.71529 * 0.02562 * 23 16 15 25 25 C 1.51369 * 110.23870 * 179.97438 * 24 23 16 26 26 C 1.54713 * 105.01983 * 16.97408 * 25 24 23 27 27 C 1.51313 * 141.97333 * 180.02562 * 23 16 15 28 28 C 1.47480 * 87.83882 * 27.01055 * 12 11 9 29 29 H 0.96997 * 119.99987 * 359.97438 * 1 2 3 30 30 H 0.96698 * 113.99780 * 46.92345 * 10 9 7 31 31 H 1.09006 * 113.47288 * 105.56517 * 11 9 7 32 32 H 1.08997 * 113.47821 * 335.10427 * 11 9 7 33 33 H 1.09004 * 109.47103 * 49.99686 * 13 12 11 34 34 H 1.09001 * 109.47095 * 290.00183 * 13 12 11 35 35 H 1.07997 * 120.03318 * 359.97438 * 18 17 16 36 36 H 1.07998 * 119.96394 * 180.31660 * 19 18 17 37 37 H 1.08000 * 119.92881 * 179.70248 * 20 19 18 38 38 H 1.08005 * 119.97009 * 180.02562 * 21 20 19 39 39 H 1.08006 * 120.03514 * 180.02562 * 22 21 20 40 40 H 1.09002 * 110.33259 * 135.82351 * 25 24 23 41 41 H 1.09004 * 110.33161 * 257.95077 * 25 24 23 42 42 H 1.09004 * 111.00602 * 216.10260 * 26 25 24 43 43 H 1.09004 * 110.96455 * 92.36701 * 26 25 24 44 44 H 1.09002 * 110.33767 * 281.96167 * 27 23 16 45 45 H 1.08996 * 110.33675 * 44.09826 * 27 23 16 46 46 H 1.09005 * 113.47286 * 87.75248 * 28 12 11 47 47 H 1.08993 * 113.48236 * 218.22306 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.1920 -2.5426 0.9578 11 6 2.1498 -3.7437 -0.0018 12 7 1.2070 -4.3579 -0.9552 13 6 1.9247 -5.0854 -2.0105 14 6 0.9441 -5.8971 -2.8170 15 7 0.5821 -7.1290 -2.5686 16 7 -0.3412 -7.5197 -3.5458 17 6 -0.9696 -8.7696 -3.6340 18 6 -2.2808 -8.8588 -4.0817 19 6 -2.8954 -10.0925 -4.1734 20 6 -2.2100 -11.2366 -3.8083 21 6 -0.9060 -11.1504 -3.3567 22 6 -0.2841 -9.9203 -3.2684 23 6 -0.5198 -6.4760 -4.3911 24 6 0.2638 -5.4615 -3.9632 25 6 0.1083 -4.2607 -4.8716 26 6 -1.1965 -4.5215 -5.6610 27 6 -1.2836 -6.0631 -5.6303 28 6 0.8546 -2.9960 -1.3979 29 1 -0.4850 0.8400 0.0004 30 1 -0.3725 -1.7575 0.9561 31 1 2.1872 -4.2532 0.9611 32 1 3.1389 -3.5648 -0.4233 33 1 2.6607 -5.7498 -1.5578 34 1 2.4305 -4.3736 -2.6630 35 1 -2.8182 -7.9650 -4.3622 36 1 -3.9136 -10.1630 -4.5264 37 1 -2.6942 -12.1996 -3.8763 38 1 -0.3730 -12.0459 -3.0726 39 1 0.7346 -9.8536 -2.9159 40 1 0.0175 -3.3487 -4.2815 41 1 0.9569 -4.1880 -5.5518 42 1 -1.1134 -4.1565 -6.6847 43 1 -2.0531 -4.0730 -5.1576 44 1 -0.8186 -6.4865 -6.5206 45 1 -2.3232 -6.3824 -5.5585 46 1 1.4981 -2.6174 -2.1921 47 1 -0.2056 -2.8717 -1.6183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412972583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:38 Heat of formation + Delta-G solvation = 87.292153 kcal Electronic energy + Delta-G solvation = -29032.371235 eV Core-core repulsion = 25182.388735 eV Total energy + Delta-G solvation = -3849.982500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.93406 -40.92127 -40.02472 -37.30040 -36.44619 -34.71166 -34.08776 -32.07954 -31.60361 -29.85923 -29.25384 -28.41609 -27.59332 -26.69403 -24.66832 -23.75757 -23.13087 -22.37329 -20.69336 -20.49244 -20.46717 -19.19310 -18.58938 -17.27905 -17.21441 -17.09620 -16.64836 -16.13218 -15.96109 -15.80072 -15.69265 -15.30413 -15.07227 -14.51286 -14.47413 -14.20542 -13.97724 -13.77261 -13.72589 -13.64371 -13.60532 -13.37692 -12.93375 -12.82715 -12.68152 -12.55951 -12.30182 -12.22171 -12.19437 -12.05992 -11.99397 -11.84233 -11.45887 -11.24685 -10.90194 -10.61965 -10.09258 -10.06330 -9.74215 -9.68789 -9.02751 -8.23792 -6.41705 -0.13951 0.28755 0.96255 1.26697 1.43971 1.46128 1.55896 1.57389 2.38847 2.68305 2.96753 3.21158 3.30612 3.45416 3.66469 3.80421 3.86189 3.89645 4.09793 4.11773 4.17669 4.18476 4.19812 4.25233 4.38697 4.39968 4.43770 4.49551 4.59059 4.64051 4.75617 4.77396 4.83911 4.87337 4.96673 4.98825 5.10885 5.12433 5.18314 5.29527 5.31826 5.33279 5.37587 5.43730 5.44934 5.60417 5.75936 5.79447 5.96629 6.24929 6.26189 6.61601 6.64388 7.31247 7.55729 8.81869 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.002678 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.711235 B =10452.407508 C =11127.514379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.026 3.974 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.221 3.779 10 O -0.586 6.586 11 C 0.014 3.986 12 N -0.475 5.475 13 C 0.098 3.902 14 C 0.107 3.893 15 N -0.310 5.310 16 N -0.319 5.319 17 C 0.123 3.877 18 C -0.139 4.139 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.100 4.100 22 C -0.136 4.136 23 C 0.048 3.952 24 C -0.263 4.263 25 C -0.048 4.048 26 C -0.104 4.104 27 C -0.037 4.037 28 C 0.004 3.996 29 H 0.274 0.726 30 H 0.383 0.617 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -17.346 -16.327 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.174 4.174 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.180 3.820 10 O -0.398 6.398 11 C -0.115 4.115 12 N -0.198 5.198 13 C -0.032 4.032 14 C -0.059 4.059 15 N -0.130 5.130 16 N -0.094 5.094 17 C 0.032 3.968 18 C -0.159 4.159 19 C -0.111 4.111 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.156 4.156 23 C -0.077 4.077 24 C -0.274 4.274 25 C -0.087 4.087 26 C -0.142 4.142 27 C -0.076 4.076 28 C -0.126 4.126 29 H 0.084 0.916 30 H 0.238 0.762 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.151 0.849 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.172 0.828 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.086 0.914 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.201 -19.391 -15.204 25.184 hybrid contribution 0.936 2.580 -0.267 2.757 sum -4.266 -16.811 -15.470 23.241 Atomic orbital electron populations 1.69389 1.07339 1.28680 1.50758 1.25857 0.95783 1.02886 0.92859 0.85358 0.78484 0.78106 0.78484 1.19582 1.20705 1.19323 1.21809 0.93928 0.91273 1.52167 0.91224 1.19730 0.85327 0.91846 0.85141 1.86023 1.45757 1.47775 1.60241 1.24022 0.95804 0.94846 0.96815 1.68837 1.27514 1.13293 1.10181 1.21016 0.92741 0.96257 0.93182 1.21902 0.97940 0.91608 0.94487 1.77397 1.09417 1.15102 1.11076 1.45391 1.33859 1.09842 1.20328 1.18028 0.93055 0.81895 1.03818 1.21224 0.91397 1.00600 1.02714 1.21426 1.01270 0.90486 0.97910 1.21689 0.94127 1.00212 0.97623 1.21396 0.95895 0.96518 0.97991 1.21106 1.00439 0.91995 1.02024 1.22578 1.00854 0.87316 0.96912 1.21306 1.05476 1.00309 1.00283 1.20585 0.99400 0.93310 0.95355 1.22460 0.96464 0.93140 1.02159 1.20964 0.99469 0.96728 0.90410 1.24458 0.99290 0.88126 1.00716 0.91586 0.76182 0.91379 0.89541 0.89590 0.90805 0.84862 0.81762 0.81850 0.82754 0.86794 0.92710 0.89582 0.86590 0.90928 0.87325 0.88696 0.91439 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 11.02 21.45 0.24 -49.95 16 2 C 0.03 1.35 5.40 84.65 0.46 1.81 16 3 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.55 -29.72 8.68 25.60 0.22 -29.50 16 8 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.22 11.64 1.57 -11.19 -0.02 11.62 16 10 O -0.59 -33.93 13.54 -148.98 -2.02 -35.95 16 11 C 0.01 0.63 7.09 83.58 0.59 1.22 16 12 N -0.48 -21.70 6.32 -932.84 -5.89 -27.59 16 13 C 0.10 3.79 5.38 85.56 0.46 4.25 16 14 C 0.11 4.19 6.81 43.20 0.29 4.48 16 15 N -0.31 -12.44 12.33 -47.20 -0.58 -13.02 16 16 N -0.32 -10.83 3.74 -175.35 -0.66 -11.49 16 17 C 0.12 3.44 6.40 38.09 0.24 3.68 16 18 C -0.14 -2.94 9.48 22.39 0.21 -2.72 16 19 C -0.09 -1.33 10.04 22.25 0.22 -1.10 16 20 C -0.12 -1.54 10.04 22.29 0.22 -1.31 16 21 C -0.10 -1.69 10.04 22.25 0.22 -1.47 16 22 C -0.14 -3.41 9.76 22.39 0.22 -3.19 16 23 C 0.05 1.46 6.96 41.48 0.29 1.75 16 24 C -0.26 -8.97 6.83 -19.88 -0.14 -9.11 16 25 C -0.05 -1.30 6.79 30.64 0.21 -1.09 16 26 C -0.10 -1.98 7.14 31.67 0.23 -1.76 16 27 C -0.04 -0.71 6.57 30.53 0.20 -0.51 16 28 C 0.00 0.17 7.13 83.58 0.60 0.77 16 29 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.38 22.53 6.34 -74.06 -0.47 22.06 16 31 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 32 H 0.09 3.53 7.87 -2.39 -0.02 3.51 16 33 H 0.09 3.11 8.08 -2.39 -0.02 3.10 16 34 H 0.07 2.64 7.30 -2.39 -0.02 2.62 16 35 H 0.13 2.57 6.43 -2.91 -0.02 2.55 16 36 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 1.46 6.90 -2.39 -0.02 1.44 16 46 H 0.07 3.11 7.37 -2.38 -0.02 3.10 16 47 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.52 385.56 -1.63 -73.15 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: 0.52 Total: 43.58 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.74 Total: -22.17 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -6.89 Total: -102.05 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -2.02 Total: -35.95 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -71.52 -1.63 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412972583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.443 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds