Wall clock time and date at job start Tue Mar 31 2020 22:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47234 * 270.00291 * 3 2 1 5 5 H 1.48501 * 109.46971 * 30.00159 * 3 2 1 6 6 H 1.48498 * 109.47128 * 150.00115 * 3 2 1 7 7 C 1.38951 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00350 * 359.97438 * 7 2 1 9 9 N 1.37103 * 119.99957 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00269 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99729 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00412 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47395 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99847 * 179.97438 * 13 12 10 15 15 O 1.21580 * 120.00204 * 5.07871 * 14 13 12 16 16 N 1.34780 * 119.99807 * 185.07085 * 14 13 12 17 17 C 1.46920 * 120.62830 * 174.96332 * 16 14 13 18 18 C 1.53194 * 108.77795 * 233.58847 * 17 16 14 19 19 C 1.53038 * 109.31408 * 305.37062 * 18 17 16 20 20 N 1.46497 * 109.46294 * 181.38367 * 19 18 17 21 21 C 1.47050 * 125.41389 * 119.68700 * 20 19 18 22 22 C 1.54100 * 103.86709 * 180.26793 * 21 20 19 23 23 N 1.47056 * 103.85957 * 359.97438 * 22 21 20 24 24 C 1.33947 * 109.18147 * 0.02562 * 23 22 21 25 25 O 1.21581 * 123.04517 * 180.02562 * 24 23 22 26 26 C 1.53037 * 109.52813 * 61.36909 * 19 18 17 27 27 C 1.46927 * 120.63288 * 354.94851 * 16 14 13 28 28 H 0.97003 * 119.99892 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99770 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47177 * 59.99698 * 12 10 9 31 31 H 1.09002 * 109.47487 * 299.99911 * 12 10 9 32 32 H 0.96997 * 119.99938 * 0.02562 * 13 12 10 33 33 H 1.09008 * 109.58585 * 113.80781 * 17 16 14 34 34 H 1.09001 * 109.70673 * 353.45060 * 17 16 14 35 35 H 1.08998 * 109.49720 * 185.41302 * 18 17 16 36 36 H 1.09000 * 109.49306 * 65.31786 * 18 17 16 37 37 H 1.09001 * 109.45925 * 301.35736 * 19 18 17 38 38 H 1.08998 * 110.54989 * 298.86338 * 21 20 19 39 39 H 1.09005 * 110.54812 * 61.67165 * 21 20 19 40 40 H 1.08999 * 110.54859 * 241.40963 * 22 21 20 41 41 H 1.08997 * 110.67410 * 118.65282 * 22 21 20 42 42 H 0.97006 * 125.41189 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.49912 * 58.58049 * 26 19 18 44 44 H 1.08998 * 109.50013 * 178.67994 * 26 19 18 45 45 H 1.08997 * 109.58630 * 246.19733 * 27 16 14 46 46 H 1.09004 * 109.58447 * 6.47740 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0490 -3.7519 0.0006 14 6 7.3741 -3.9981 0.0002 15 8 8.1635 -3.0781 0.0925 16 7 7.8241 -5.2644 -0.1024 17 6 9.2627 -5.5407 -0.2150 18 6 9.5022 -6.4112 -1.4527 19 6 8.6264 -7.6634 -1.3680 20 7 8.8773 -8.5143 -2.5339 21 6 9.3815 -9.8949 -2.4885 22 6 9.4643 -10.3067 -3.9711 23 7 8.9973 -9.1146 -4.6945 24 6 8.6890 -8.1563 -3.8109 25 8 8.2749 -7.0611 -4.1382 26 6 7.1517 -7.2553 -1.3425 27 6 6.8855 -6.3948 -0.1034 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3634 0.0004 30 1 5.9241 -1.8568 0.8900 31 1 5.9241 -1.8569 -0.8900 32 1 5.4186 -4.4891 0.0006 33 1 9.6041 -6.0694 0.6750 34 1 9.8102 -4.6036 -0.3159 35 1 10.5515 -6.7033 -1.4945 36 1 9.2450 -5.8473 -2.3493 37 1 8.8667 -8.2137 -0.4583 38 1 10.3684 -9.9268 -2.0269 39 1 8.6855 -10.5389 -1.9508 40 1 8.8094 -11.1551 -4.1697 41 1 10.4914 -10.5446 -4.2476 42 1 8.9242 -9.0348 -5.6585 43 1 6.9168 -6.6834 -2.2402 44 1 6.5277 -8.1483 -1.3059 45 1 7.0329 -6.9930 0.7957 46 1 5.8622 -6.0199 -0.1292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470092844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:21 Heat of formation + Delta-G solvation = -58.103539 kcal Electronic energy + Delta-G solvation = -29753.523953 eV Core-core repulsion = 25486.387360 eV Total energy + Delta-G solvation = -4267.136593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47092 -40.23645 -38.52802 -37.49700 -36.56845 -34.56235 -34.47020 -33.73630 -31.78250 -31.40520 -31.19792 -29.10831 -27.72367 -25.37847 -24.20168 -23.42998 -23.37194 -21.95787 -20.23673 -19.68250 -19.38441 -18.76742 -18.05439 -17.88024 -16.88186 -16.24988 -15.99148 -15.61118 -15.50433 -15.17343 -14.98916 -14.61162 -14.47841 -14.45284 -14.21915 -14.10969 -13.81572 -13.59097 -13.14680 -13.08267 -12.89483 -12.76603 -12.53003 -12.32891 -12.22223 -12.10186 -11.94307 -11.42780 -11.19572 -11.10508 -11.02339 -10.60248 -10.16661 -10.02967 -9.96405 -9.65560 -9.59007 -8.95958 -8.90579 -8.71926 -8.47239 -8.26030 -6.36934 -3.89225 2.19450 2.69338 2.90153 3.03660 3.08460 3.16018 3.35193 3.51491 3.62781 3.92569 3.99162 4.07713 4.31849 4.34133 4.57714 4.63614 4.73522 4.81253 4.87196 4.88972 5.09289 5.12678 5.17917 5.19054 5.19308 5.37254 5.51359 5.59162 5.62480 5.69753 5.79767 5.87394 5.92498 6.03303 6.16932 6.44441 6.48804 6.71079 6.75650 7.02054 7.21377 7.49161 8.04499 8.14852 8.34289 8.48724 8.77113 8.85792 9.34197 9.68229 10.75276 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.002205 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.435316 B =12694.426624 C =13250.852722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.309 4.309 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.440 3.560 11 O -0.580 6.580 12 C 0.125 3.875 13 N -0.725 5.725 14 C 0.712 3.288 15 O -0.596 6.596 16 N -0.630 5.630 17 C 0.137 3.863 18 C -0.150 4.150 19 C 0.188 3.812 20 N -0.632 5.632 21 C 0.091 3.909 22 C 0.093 3.907 23 N -0.746 5.746 24 C 0.697 3.303 25 O -0.575 6.575 26 C -0.151 4.151 27 C 0.115 3.885 28 H 0.275 0.725 29 H 0.375 0.625 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.407 0.593 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.428 0.572 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.945 -22.296 -3.623 32.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.004 4.004 13 N -0.385 5.385 14 C 0.413 3.587 15 O -0.475 6.475 16 N -0.369 5.369 17 C 0.013 3.987 18 C -0.190 4.190 19 C 0.086 3.914 20 N -0.370 5.370 21 C -0.032 4.032 22 C -0.032 4.032 23 N -0.409 5.409 24 C 0.397 3.603 25 O -0.452 6.452 26 C -0.190 4.190 27 C -0.009 4.009 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.270 0.730 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 22.616 -21.523 -3.574 31.425 hybrid contribution 0.210 0.741 -0.480 0.907 sum 22.827 -20.782 -4.054 31.135 Atomic orbital electron populations 1.69623 1.05697 1.27757 1.48378 1.25066 0.95542 0.98170 0.97191 0.86668 0.79928 0.83747 0.79152 1.19396 1.20023 1.19181 1.19437 0.78967 0.96772 1.48534 0.86101 1.42113 1.07681 1.06140 1.65539 1.19661 0.88110 0.84849 0.84778 1.90526 1.69294 1.30953 1.55654 1.20813 0.93300 0.83045 1.03242 1.44935 1.05322 1.09249 1.79003 1.15705 0.82608 0.82696 0.77702 1.90880 1.55243 1.42932 1.58472 1.47181 1.07114 1.04347 1.78218 1.21348 0.80363 1.00649 0.96324 1.22397 0.99565 0.96401 1.00618 1.20770 0.95190 0.90078 0.85372 1.47357 1.69841 1.14478 1.05356 1.22387 1.00603 0.83683 0.96558 1.22310 1.00934 0.89409 0.90594 1.45167 1.72050 1.14728 1.08966 1.15953 0.78600 0.84137 0.81576 1.91000 1.52023 1.21493 1.80636 1.22365 0.95612 1.00703 1.00318 1.21611 0.93966 0.87863 0.97493 0.91435 0.79220 0.89800 0.89937 0.75279 0.91750 0.88421 0.90743 0.89444 0.89034 0.90089 0.90011 0.90090 0.90116 0.73020 0.89223 0.90516 0.91081 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.46 27.74 -169.99 -4.71 14.74 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 9 N -0.58 -13.82 5.09 -10.96 -0.06 -13.88 16 10 C 0.44 10.04 7.85 -10.99 -0.09 9.95 16 11 O -0.58 -15.01 15.24 5.54 0.08 -14.93 16 12 C 0.12 2.32 6.16 -5.20 -0.03 2.28 16 13 N -0.73 -12.71 5.44 -66.42 -0.36 -13.07 16 14 C 0.71 12.13 8.30 -86.91 -0.72 11.41 16 15 O -0.60 -11.84 15.79 5.30 0.08 -11.76 16 16 N -0.63 -8.25 2.97 -178.49 -0.53 -8.78 16 17 C 0.14 1.46 6.41 -3.71 -0.02 1.44 16 18 C -0.15 -1.48 5.35 -26.61 -0.14 -1.62 16 19 C 0.19 1.57 2.74 -67.89 -0.19 1.39 16 20 N -0.63 -5.15 2.84 -171.16 -0.49 -5.64 16 21 C 0.09 0.35 7.65 -3.17 -0.02 0.33 16 22 C 0.09 0.30 8.06 -3.16 -0.03 0.27 16 23 N -0.75 -5.30 6.37 -64.70 -0.41 -5.71 16 24 C 0.70 7.71 8.07 -88.39 -0.71 7.00 16 25 O -0.57 -9.20 15.06 5.29 0.08 -9.12 16 26 C -0.15 -1.53 5.35 -26.61 -0.14 -1.67 16 27 C 0.11 1.21 6.43 -3.71 -0.02 1.18 16 28 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.41 6.99 4.89 -40.82 -0.20 6.79 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.10 1.22 7.04 -51.93 -0.37 0.85 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.20 6.84 -51.93 -0.36 0.85 16 37 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.43 2.52 8.96 -40.82 -0.37 2.15 16 43 H 0.09 1.26 6.83 -51.93 -0.35 0.91 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.04 5.56 -51.93 -0.29 0.75 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -38.04 370.39 -8.69 -46.74 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -6.37 Total: 16.15 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: -2.37 Total: 24.26 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.07 Total: -71.66 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: 0.25 Total: -35.81 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.04 -8.69 -46.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470092844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.366 kcal (2) G-P(sol) polarization free energy of solvation -38.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds