Wall clock time and date at job start Tue Mar 31 2020 22:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47234 * 270.00291 * 3 2 1 5 5 H 1.48501 * 109.46971 * 30.00159 * 3 2 1 6 6 H 1.48498 * 109.47128 * 150.00115 * 3 2 1 7 7 C 1.38951 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00350 * 359.97438 * 7 2 1 9 9 N 1.37103 * 119.99957 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00269 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99729 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00412 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47395 * 179.97438 * 12 10 9 14 14 C 1.34782 * 119.99847 * 179.97438 * 13 12 10 15 15 O 1.21580 * 120.00204 * 5.07871 * 14 13 12 16 16 N 1.34780 * 119.99807 * 185.07085 * 14 13 12 17 17 C 1.46920 * 120.62830 * 174.96332 * 16 14 13 18 18 C 1.53194 * 108.77795 * 233.58847 * 17 16 14 19 19 C 1.53038 * 109.31408 * 305.37062 * 18 17 16 20 20 N 1.46497 * 109.46294 * 181.38367 * 19 18 17 21 21 C 1.47050 * 125.41389 * 119.68700 * 20 19 18 22 22 C 1.54100 * 103.86709 * 180.26793 * 21 20 19 23 23 N 1.47056 * 103.85957 * 359.97438 * 22 21 20 24 24 C 1.33947 * 109.18147 * 0.02562 * 23 22 21 25 25 O 1.21581 * 123.04517 * 180.02562 * 24 23 22 26 26 C 1.53037 * 109.52813 * 61.36909 * 19 18 17 27 27 C 1.46927 * 120.63288 * 354.94851 * 16 14 13 28 28 H 0.97003 * 119.99892 * 359.97438 * 1 2 3 29 29 H 0.97001 * 119.99770 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47177 * 59.99698 * 12 10 9 31 31 H 1.09002 * 109.47487 * 299.99911 * 12 10 9 32 32 H 0.96997 * 119.99938 * 0.02562 * 13 12 10 33 33 H 1.09008 * 109.58585 * 113.80781 * 17 16 14 34 34 H 1.09001 * 109.70673 * 353.45060 * 17 16 14 35 35 H 1.08998 * 109.49720 * 185.41302 * 18 17 16 36 36 H 1.09000 * 109.49306 * 65.31786 * 18 17 16 37 37 H 1.09001 * 109.45925 * 301.35736 * 19 18 17 38 38 H 1.08998 * 110.54989 * 298.86338 * 21 20 19 39 39 H 1.09005 * 110.54812 * 61.67165 * 21 20 19 40 40 H 1.08999 * 110.54859 * 241.40963 * 22 21 20 41 41 H 1.08997 * 110.67410 * 118.65282 * 22 21 20 42 42 H 0.97006 * 125.41189 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.49912 * 58.58049 * 26 19 18 44 44 H 1.08998 * 109.50013 * 178.67994 * 26 19 18 45 45 H 1.08997 * 109.58630 * 246.19733 * 27 16 14 46 46 H 1.09004 * 109.58447 * 6.47740 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0490 -3.7519 0.0006 14 6 7.3741 -3.9981 0.0002 15 8 8.1635 -3.0781 0.0925 16 7 7.8241 -5.2644 -0.1024 17 6 9.2627 -5.5407 -0.2150 18 6 9.5022 -6.4112 -1.4527 19 6 8.6264 -7.6634 -1.3680 20 7 8.8773 -8.5143 -2.5339 21 6 9.3815 -9.8949 -2.4885 22 6 9.4643 -10.3067 -3.9711 23 7 8.9973 -9.1146 -4.6945 24 6 8.6890 -8.1563 -3.8109 25 8 8.2749 -7.0611 -4.1382 26 6 7.1517 -7.2553 -1.3425 27 6 6.8855 -6.3948 -0.1034 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3634 0.0004 30 1 5.9241 -1.8568 0.8900 31 1 5.9241 -1.8569 -0.8900 32 1 5.4186 -4.4891 0.0006 33 1 9.6041 -6.0694 0.6750 34 1 9.8102 -4.6036 -0.3159 35 1 10.5515 -6.7033 -1.4945 36 1 9.2450 -5.8473 -2.3493 37 1 8.8667 -8.2137 -0.4583 38 1 10.3684 -9.9268 -2.0269 39 1 8.6855 -10.5389 -1.9508 40 1 8.8094 -11.1551 -4.1697 41 1 10.4914 -10.5446 -4.2476 42 1 8.9242 -9.0348 -5.6585 43 1 6.9168 -6.6834 -2.2402 44 1 6.5277 -8.1483 -1.3059 45 1 7.0329 -6.9930 0.7957 46 1 5.8622 -6.0199 -0.1292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470092844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:20 Heat of formation + Delta-G solvation = -90.598644 kcal Electronic energy + Delta-G solvation = -29754.933046 eV Core-core repulsion = 25486.387360 eV Total energy + Delta-G solvation = -4268.545687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14807 -41.44237 -40.29740 -38.56966 -37.35650 -36.33042 -35.52023 -35.20591 -33.84931 -32.27694 -32.04051 -29.68119 -29.20538 -26.62707 -25.72344 -24.28879 -23.82154 -22.85409 -21.53058 -21.13176 -20.78177 -20.27251 -19.29395 -18.64138 -17.68875 -17.39597 -17.11047 -17.01930 -16.86909 -16.55192 -16.01881 -15.84745 -15.72522 -15.44474 -15.14768 -14.99983 -14.82885 -14.71139 -14.63115 -14.32781 -14.05215 -14.00601 -13.52366 -13.44593 -13.22062 -13.06448 -12.98210 -12.85974 -12.45938 -12.28269 -12.01004 -11.93840 -11.81336 -11.59988 -11.31847 -11.02030 -10.67776 -10.37042 -10.29840 -10.28916 -9.56191 -9.42062 -8.46828 -6.08697 1.29932 1.33164 1.42366 1.50809 1.62806 1.76378 2.08198 2.13872 2.19342 2.66142 2.97715 3.06776 3.09208 3.62979 3.65247 3.76676 3.95743 3.97490 4.05863 4.24898 4.31343 4.33025 4.37852 4.39508 4.42312 4.52161 4.65594 4.73948 4.77398 4.80900 4.88950 5.02960 5.03864 5.17013 5.27069 5.40832 5.46377 5.54284 5.79864 5.83884 5.87196 6.21681 6.47309 6.60892 6.75971 6.85014 7.26134 7.45556 7.62233 7.75769 8.69531 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020279 B = 0.002205 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.435316 B =12694.426624 C =13250.852722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.136 3.864 13 N -0.730 5.730 14 C 0.706 3.294 15 O -0.628 6.628 16 N -0.626 5.626 17 C 0.136 3.864 18 C -0.140 4.140 19 C 0.189 3.811 20 N -0.631 5.631 21 C 0.087 3.913 22 C 0.090 3.910 23 N -0.744 5.744 24 C 0.681 3.319 25 O -0.640 6.640 26 C -0.143 4.143 27 C 0.114 3.886 28 H 0.282 0.718 29 H 0.392 0.608 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.407 0.593 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.431 0.569 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.218 -23.787 -2.388 35.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.234 3.766 11 O -0.500 6.500 12 C 0.008 3.992 13 N -0.390 5.390 14 C 0.407 3.593 15 O -0.510 6.510 16 N -0.363 5.363 17 C 0.013 3.987 18 C -0.179 4.179 19 C 0.087 3.913 20 N -0.368 5.368 21 C -0.035 4.035 22 C -0.033 4.033 23 N -0.405 5.405 24 C 0.381 3.619 25 O -0.521 6.521 26 C -0.183 4.183 27 C -0.009 4.009 28 H 0.091 0.909 29 H 0.228 0.772 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.248 0.752 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.154 0.846 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.272 0.728 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.129 0.871 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.942 -23.130 -2.336 34.834 hybrid contribution -0.822 0.990 -0.919 1.581 sum 25.120 -22.141 -3.254 33.642 Atomic orbital electron populations 1.69779 1.07954 1.29465 1.49218 1.26064 0.96467 1.02564 0.95709 0.85450 0.79609 0.77083 0.80031 1.18251 1.19558 1.15643 1.19031 0.80850 0.95320 1.50777 0.91789 1.41915 1.06201 1.07344 1.66237 1.20448 0.89914 0.83932 0.82348 1.90511 1.70743 1.32321 1.56433 1.20702 0.89455 0.84264 1.04810 1.44942 1.05819 1.08779 1.79507 1.15868 0.81944 0.83775 0.77675 1.90849 1.55733 1.44311 1.60079 1.47330 1.08636 1.03585 1.76746 1.21549 0.78574 1.00270 0.98320 1.22268 1.01165 0.96524 0.97967 1.20832 0.93203 0.90132 0.87131 1.47398 1.69147 1.16154 1.04093 1.22769 1.02292 0.81167 0.97264 1.22647 1.02628 0.88206 0.89868 1.45245 1.71033 1.15257 1.09009 1.16403 0.78539 0.83876 0.83045 1.90953 1.54903 1.24417 1.81858 1.22262 0.97720 1.00453 0.97848 1.21799 0.92510 0.87287 0.99330 0.90882 0.77229 0.87809 0.88550 0.75209 0.87748 0.90664 0.88519 0.94263 0.84554 0.87617 0.87915 0.88148 0.87844 0.72792 0.94074 0.88877 0.87078 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 13.96 21.66 0.30 -54.94 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 3 Si 0.96 39.37 27.74 68.60 1.90 41.27 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.23 -8.26 6.52 99.48 0.65 -7.61 16 7 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 8 H 0.06 4.38 7.39 -2.91 -0.02 4.36 16 9 N -0.58 -27.76 5.09 -306.99 -1.56 -29.32 16 10 C 0.45 20.64 7.85 87.66 0.69 21.32 16 11 O -0.61 -33.03 15.24 -3.08 -0.05 -33.08 16 12 C 0.14 4.98 6.16 85.63 0.53 5.51 16 13 N -0.73 -25.69 5.44 -482.30 -2.62 -28.32 16 14 C 0.71 23.98 8.30 179.05 1.49 25.46 16 15 O -0.63 -24.84 15.79 -3.97 -0.06 -24.90 16 16 N -0.63 -15.85 2.97 -836.89 -2.49 -18.34 16 17 C 0.14 2.67 6.41 86.36 0.55 3.23 16 18 C -0.14 -2.60 5.35 30.67 0.16 -2.43 16 19 C 0.19 2.71 2.74 45.02 0.12 2.83 16 20 N -0.63 -8.95 2.84 -814.14 -2.31 -11.27 16 21 C 0.09 0.31 7.65 86.65 0.66 0.97 16 22 C 0.09 0.29 8.06 86.65 0.70 0.99 16 23 N -0.74 -9.85 6.37 -477.35 -3.04 -12.89 16 24 C 0.68 15.09 8.07 179.57 1.45 16.54 16 25 O -0.64 -22.00 15.06 -3.97 -0.06 -22.06 16 26 C -0.14 -2.81 5.35 30.67 0.16 -2.65 16 27 C 0.11 2.24 6.43 86.36 0.56 2.80 16 28 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.39 15.97 5.76 -92.71 -0.53 15.43 16 30 H 0.10 3.44 8.14 -2.39 -0.02 3.43 16 31 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.41 14.32 4.89 -92.71 -0.45 13.87 16 33 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 1.85 7.04 -2.39 -0.02 1.84 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.13 6.84 -2.39 -0.02 1.12 16 37 H 0.14 0.82 8.09 -2.39 -0.02 0.80 16 38 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.10 -0.01 8.14 -2.38 -0.02 -0.02 16 40 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.43 4.98 8.96 -92.70 -0.83 4.15 16 43 H 0.04 1.23 6.83 -2.39 -0.02 1.22 16 44 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.67 5.56 -2.38 -0.01 1.65 16 Total: -1.00 -91.71 370.39 -2.43 -94.13 By element: Atomic # 1 Polarization: 44.40 SS G_CDS: -0.82 Total: 43.57 kcal Atomic # 6 Polarization: 47.74 SS G_CDS: 8.39 Total: 56.14 kcal Atomic # 7 Polarization: -143.35 SS G_CDS: -11.73 Total: -155.08 kcal Atomic # 8 Polarization: -79.86 SS G_CDS: -0.17 Total: -80.03 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.90 Total: 41.27 kcal Total: -91.71 -2.43 -94.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470092844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.536 kcal (2) G-P(sol) polarization free energy of solvation -91.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds