Wall clock time and date at job start Tue Mar 31 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47401 * 240.00060 * 3 2 1 5 5 H 1.48502 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46739 * 120.00230 * 3 2 1 7 7 C 1.38948 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99903 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.46843 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99839 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.84915 * 25.33321 * 14 13 12 16 16 C 1.53781 * 113.61796 * 156.52932 * 14 13 12 17 17 C 1.53777 * 87.08336 * 140.06261 * 16 14 13 18 18 H 1.09008 * 113.61204 * 89.11878 * 17 16 14 19 19 C 1.52998 * 113.61649 * 219.93585 * 17 16 14 20 20 N 1.46497 * 109.47203 * 185.00515 * 19 17 16 21 21 C 1.34774 * 119.99932 * 180.02562 * 20 19 17 22 22 O 1.21280 * 120.00261 * 359.97438 * 21 20 19 23 23 C 1.50709 * 119.99780 * 179.97438 * 21 20 19 24 24 H 1.08994 * 110.49006 * 319.29184 * 23 21 20 25 25 C 1.54101 * 110.55032 * 81.99868 * 23 21 20 26 26 N 1.47050 * 103.86322 * 118.59166 * 25 23 21 27 27 C 1.33948 * 109.17984 * 359.97438 * 26 25 23 28 28 O 1.21585 * 123.04384 * 179.97438 * 27 26 25 29 29 N 1.34262 * 113.96329 * 0.08423 * 27 26 25 30 30 C 1.53775 * 87.07992 * 334.56762 * 17 16 14 31 31 H 0.96994 * 120.00070 * 359.97438 * 1 2 3 32 32 H 0.96989 * 120.00383 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46982 * 59.99607 * 12 10 9 34 34 H 1.09005 * 109.46740 * 299.99813 * 12 10 9 35 35 H 1.00899 * 111.00621 * 303.95049 * 13 12 10 36 36 H 1.08997 * 113.61673 * 254.61810 * 16 14 13 37 37 H 1.09005 * 113.61396 * 25.51638 * 16 14 13 38 38 H 1.09000 * 109.47114 * 305.00039 * 19 17 16 39 39 H 1.08997 * 109.46997 * 64.99916 * 19 17 16 40 40 H 0.97004 * 119.99910 * 359.97438 * 20 19 17 41 41 H 1.08997 * 110.54852 * 237.18762 * 25 23 21 42 42 H 1.09003 * 110.54607 * 359.85536 * 25 23 21 43 43 H 0.96997 * 125.41213 * 179.97438 * 26 25 23 44 44 H 0.96997 * 125.58977 * 179.97438 * 29 27 26 45 45 H 1.08993 * 113.61636 * 270.87622 * 30 17 16 46 46 H 1.09008 * 113.61006 * 139.97865 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0030 12 6 1.2439 -4.8630 -0.0010 13 7 2.1986 -5.9794 -0.0017 14 6 1.4983 -7.2708 -0.0006 15 1 0.4980 -7.2102 -0.4293 16 6 2.3401 -8.4286 -0.5624 17 6 1.7490 -9.2988 0.5593 18 1 0.8171 -9.7927 0.2837 19 6 2.7626 -10.2536 1.1931 20 7 2.0813 -11.1172 2.1607 21 6 2.7801 -12.0434 2.8464 22 8 3.9729 -12.1624 2.6620 23 6 2.0792 -12.9313 3.8422 24 1 1.3493 -12.3599 4.4155 25 6 1.3988 -14.1146 3.1269 26 7 2.0623 -15.2979 3.6942 27 6 2.9776 -14.9027 4.5888 28 8 3.6750 -15.6801 5.2114 29 7 3.0543 -13.5707 4.7383 30 6 1.5452 -7.9979 1.3536 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3907 -0.0005 33 1 0.6162 -4.9205 -0.8902 34 1 0.6183 -4.9209 0.8898 35 1 2.8328 -5.9124 -0.7836 36 1 2.0398 -8.7418 -1.5622 37 1 3.4149 -8.2709 -0.4721 38 1 3.2185 -10.8675 0.4162 39 1 3.5358 -9.6776 1.7014 40 1 1.1273 -11.0218 2.3084 41 1 0.3314 -14.1321 3.3471 42 1 1.5657 -14.0585 2.0512 43 1 1.8682 -16.2185 3.4580 44 1 3.6561 -13.1038 5.3388 45 1 2.4025 -7.7224 1.9677 46 1 0.6029 -7.9634 1.9006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479312908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:16 Heat of formation + Delta-G solvation = -63.533519 kcal Electronic energy + Delta-G solvation = -27894.826294 eV Core-core repulsion = 23627.454239 eV Total energy + Delta-G solvation = -4267.372055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78227 -40.02845 -39.17556 -38.07992 -36.66629 -35.28658 -34.10392 -33.51045 -33.28964 -31.23097 -30.25730 -28.09531 -26.41241 -25.81757 -24.49323 -23.89528 -22.26871 -21.70078 -21.15268 -19.80556 -19.14993 -18.51555 -18.05285 -17.89198 -16.92933 -16.57751 -16.20925 -16.08316 -15.68960 -15.57037 -15.23226 -14.88770 -14.55884 -14.46070 -14.41895 -14.19681 -13.95655 -13.74351 -13.52718 -13.42469 -12.89608 -12.58260 -12.48595 -12.31827 -11.69312 -11.58220 -11.54853 -11.06907 -11.03586 -10.90468 -10.78281 -10.56860 -10.46175 -10.44043 -10.22874 -9.90608 -9.52530 -9.52001 -9.39859 -8.47582 -8.11011 -7.98211 -6.43847 -3.84755 1.92422 2.23765 2.47564 2.81869 3.18677 3.24443 3.28948 3.45891 3.63572 3.88578 3.99887 4.06475 4.20397 4.24939 4.30153 4.47061 4.59419 4.64915 4.67133 4.79984 4.92402 5.03902 5.15512 5.18346 5.24156 5.38261 5.52650 5.59257 5.69487 5.75977 5.83042 5.87850 5.94413 6.10111 6.17957 6.32068 6.47811 6.62864 6.83286 6.96378 7.24532 7.53029 7.62667 7.66043 8.04066 8.13885 8.59077 9.15735 9.52013 10.03543 10.73769 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031148 B = 0.001419 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.711702 B =19727.611529 C =19938.112393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.657 5.657 14 C 0.059 3.941 15 H 0.070 0.930 16 C -0.131 4.131 17 C -0.125 4.125 18 H 0.095 0.905 19 C 0.130 3.870 20 N -0.721 5.721 21 C 0.498 3.502 22 O -0.520 6.520 23 C 0.103 3.897 24 H 0.118 0.882 25 C 0.105 3.895 26 N -0.739 5.739 27 C 0.706 3.294 28 O -0.582 6.582 29 N -0.715 5.715 30 C -0.121 4.121 31 H 0.272 0.728 32 H 0.392 0.608 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.351 0.649 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.403 0.597 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.433 0.567 44 H 0.436 0.564 45 H 0.093 0.907 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 -26.799 2.941 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.289 5.289 14 C -0.052 4.052 15 H 0.088 0.912 16 C -0.170 4.170 17 C -0.144 4.144 18 H 0.113 0.887 19 C 0.007 3.993 20 N -0.374 5.374 21 C 0.281 3.719 22 O -0.394 6.394 23 C -0.008 4.008 24 H 0.136 0.864 25 C -0.021 4.021 26 N -0.402 5.402 27 C 0.404 3.596 28 O -0.459 6.459 29 N -0.378 5.378 30 C -0.159 4.159 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.237 0.763 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.275 0.725 44 H 0.279 0.721 45 H 0.112 0.888 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.801 -27.072 3.793 27.755 hybrid contribution -1.059 0.982 -0.844 1.673 sum -5.859 -26.090 2.949 26.902 Atomic orbital electron populations 1.69600 1.05935 1.28269 1.50545 1.25255 0.95632 0.99714 0.97265 0.85916 0.78766 0.80431 0.79096 1.19912 1.20970 1.19877 1.19663 0.93369 0.82272 1.47731 0.87971 1.41860 1.09173 1.04616 1.64358 1.19841 0.88406 0.84758 0.84506 1.90526 1.13776 1.87072 1.55411 1.21724 0.94411 0.91071 1.01025 1.60221 1.18377 0.99475 1.50827 1.22975 0.96581 0.88582 0.97034 0.91178 1.23184 1.01171 0.95177 0.97430 1.22653 0.98817 0.94711 0.98265 0.88691 1.21452 0.95049 0.91682 0.91085 1.46000 1.12520 1.36404 1.42429 1.20766 0.87985 0.81102 0.82048 1.90791 1.14717 1.68862 1.65031 1.21862 0.91900 0.95264 0.91801 0.86430 1.22241 0.97916 0.82876 0.99047 1.45034 1.41364 1.09183 1.44663 1.15938 0.80561 0.82819 0.80242 1.91019 1.47856 1.55101 1.51876 1.44906 1.42784 1.05556 1.44551 1.23199 1.02642 0.93281 0.96812 0.91825 0.77484 0.93923 0.89707 0.82876 0.91238 0.88775 0.91278 0.90683 0.76310 0.88488 0.89493 0.72457 0.72142 0.88845 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 11 O -0.58 -15.67 15.78 5.54 0.09 -15.58 16 12 C 0.05 0.85 6.02 -4.98 -0.03 0.82 16 13 N -0.66 -9.80 6.18 -107.13 -0.66 -10.46 16 14 C 0.06 0.61 4.12 -66.90 -0.28 0.33 16 15 H 0.07 0.67 7.88 -51.93 -0.41 0.27 16 16 C -0.13 -1.06 7.23 -25.92 -0.19 -1.25 16 17 C -0.13 -0.77 3.75 -89.81 -0.34 -1.10 16 18 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 19 C 0.13 0.89 5.51 -4.04 -0.02 0.87 16 20 N -0.72 -3.43 5.56 -60.30 -0.33 -3.76 16 21 C 0.50 3.49 6.94 -10.98 -0.08 3.42 16 22 O -0.52 -6.37 16.58 5.56 0.09 -6.27 16 23 C 0.10 0.43 4.16 -68.20 -0.28 0.14 16 24 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 25 C 0.11 0.27 7.70 -3.17 -0.02 0.24 16 26 N -0.74 -4.17 6.37 -64.62 -0.41 -4.58 16 27 C 0.71 6.94 8.92 -88.12 -0.79 6.16 16 28 O -0.58 -8.44 18.05 5.29 0.10 -8.35 16 29 N -0.72 -5.36 5.64 -59.24 -0.33 -5.69 16 30 C -0.12 -1.04 7.44 -25.92 -0.19 -1.24 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 9.31 7.90 -40.82 -0.32 8.98 16 33 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.35 5.48 8.26 -39.29 -0.32 5.15 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 40 H 0.40 0.63 8.47 -40.82 -0.35 0.29 16 41 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 42 H 0.09 0.19 7.72 -51.93 -0.40 -0.21 16 43 H 0.43 1.70 8.96 -40.82 -0.37 1.33 16 44 H 0.44 3.13 8.96 -40.82 -0.37 2.76 16 45 H 0.09 1.00 7.90 -51.93 -0.41 0.59 16 46 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -38.53 390.76 -9.14 -47.67 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.67 Total: 12.40 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -2.54 Total: 10.51 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -1.08 Total: -62.10 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: 0.28 Total: -30.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.53 -9.14 -47.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479312908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.863 kcal (2) G-P(sol) polarization free energy of solvation -38.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds