Wall clock time and date at job start Tue Mar 31 2020 22:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48500 * 109.47401 * 240.00060 * 3 2 1 5 5 H 1.48502 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46739 * 120.00230 * 3 2 1 7 7 C 1.38948 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99903 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.46843 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99839 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.84915 * 25.33321 * 14 13 12 16 16 C 1.53781 * 113.61796 * 156.52932 * 14 13 12 17 17 C 1.53777 * 87.08336 * 140.06261 * 16 14 13 18 18 H 1.09008 * 113.61204 * 89.11878 * 17 16 14 19 19 C 1.52998 * 113.61649 * 219.93585 * 17 16 14 20 20 N 1.46497 * 109.47203 * 185.00515 * 19 17 16 21 21 C 1.34774 * 119.99932 * 180.02562 * 20 19 17 22 22 O 1.21280 * 120.00261 * 359.97438 * 21 20 19 23 23 C 1.50709 * 119.99780 * 179.97438 * 21 20 19 24 24 H 1.08994 * 110.49006 * 319.29184 * 23 21 20 25 25 C 1.54101 * 110.55032 * 81.99868 * 23 21 20 26 26 N 1.47050 * 103.86322 * 118.59166 * 25 23 21 27 27 C 1.33948 * 109.17984 * 359.97438 * 26 25 23 28 28 O 1.21585 * 123.04384 * 179.97438 * 27 26 25 29 29 N 1.34262 * 113.96329 * 0.08423 * 27 26 25 30 30 C 1.53775 * 87.07992 * 334.56762 * 17 16 14 31 31 H 0.96994 * 120.00070 * 359.97438 * 1 2 3 32 32 H 0.96989 * 120.00383 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46982 * 59.99607 * 12 10 9 34 34 H 1.09005 * 109.46740 * 299.99813 * 12 10 9 35 35 H 1.00899 * 111.00621 * 303.95049 * 13 12 10 36 36 H 1.08997 * 113.61673 * 254.61810 * 16 14 13 37 37 H 1.09005 * 113.61396 * 25.51638 * 16 14 13 38 38 H 1.09000 * 109.47114 * 305.00039 * 19 17 16 39 39 H 1.08997 * 109.46997 * 64.99916 * 19 17 16 40 40 H 0.97004 * 119.99910 * 359.97438 * 20 19 17 41 41 H 1.08997 * 110.54852 * 237.18762 * 25 23 21 42 42 H 1.09003 * 110.54607 * 359.85536 * 25 23 21 43 43 H 0.96997 * 125.41213 * 179.97438 * 26 25 23 44 44 H 0.96997 * 125.58977 * 179.97438 * 29 27 26 45 45 H 1.08993 * 113.61636 * 270.87622 * 30 17 16 46 46 H 1.09008 * 113.61006 * 139.97865 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0030 12 6 1.2439 -4.8630 -0.0010 13 7 2.1986 -5.9794 -0.0017 14 6 1.4983 -7.2708 -0.0006 15 1 0.4980 -7.2102 -0.4293 16 6 2.3401 -8.4286 -0.5624 17 6 1.7490 -9.2988 0.5593 18 1 0.8171 -9.7927 0.2837 19 6 2.7626 -10.2536 1.1931 20 7 2.0813 -11.1172 2.1607 21 6 2.7801 -12.0434 2.8464 22 8 3.9729 -12.1624 2.6620 23 6 2.0792 -12.9313 3.8422 24 1 1.3493 -12.3599 4.4155 25 6 1.3988 -14.1146 3.1269 26 7 2.0623 -15.2979 3.6942 27 6 2.9776 -14.9027 4.5888 28 8 3.6750 -15.6801 5.2114 29 7 3.0543 -13.5707 4.7383 30 6 1.5452 -7.9979 1.3536 31 1 -0.4850 0.8400 0.0004 32 1 0.3535 -2.3907 -0.0005 33 1 0.6162 -4.9205 -0.8902 34 1 0.6183 -4.9209 0.8898 35 1 2.8328 -5.9124 -0.7836 36 1 2.0398 -8.7418 -1.5622 37 1 3.4149 -8.2709 -0.4721 38 1 3.2185 -10.8675 0.4162 39 1 3.5358 -9.6776 1.7014 40 1 1.1273 -11.0218 2.3084 41 1 0.3314 -14.1321 3.3471 42 1 1.5657 -14.0585 2.0512 43 1 1.8682 -16.2185 3.4580 44 1 3.6561 -13.1038 5.3388 45 1 2.4025 -7.7224 1.9677 46 1 0.6029 -7.9634 1.9006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479312908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:16 Heat of formation + Delta-G solvation = -100.136010 kcal Electronic energy + Delta-G solvation = -27896.413497 eV Core-core repulsion = 23627.454239 eV Total energy + Delta-G solvation = -4268.959258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31435 -40.72906 -40.17216 -39.60268 -37.38412 -36.23116 -35.80608 -34.45644 -33.99524 -33.23269 -30.82176 -28.97887 -27.68141 -26.56866 -25.78362 -24.66758 -22.83617 -22.44242 -21.69943 -21.15715 -20.31833 -19.86405 -19.09884 -18.51336 -17.83856 -17.43653 -17.07457 -16.82137 -16.74218 -16.44300 -16.27348 -16.18383 -15.80704 -15.43838 -15.29799 -15.11008 -14.93998 -14.75874 -14.56610 -14.02912 -13.85290 -13.52985 -13.47803 -13.25100 -13.20186 -12.97766 -12.74257 -12.44034 -12.36359 -12.12650 -11.77910 -11.62260 -11.59882 -11.50094 -11.27102 -11.10107 -10.55846 -10.31577 -10.08522 -10.01212 -9.82035 -9.25742 -8.46453 -5.95201 1.39942 1.40799 1.42123 1.52724 1.72110 1.95579 2.06324 2.22618 2.29818 3.00180 3.07605 3.21011 3.33740 3.50042 3.57808 3.67881 3.83794 3.97271 4.01883 4.04992 4.29664 4.37024 4.40099 4.49407 4.52733 4.62576 4.68079 4.73409 4.79549 4.90822 4.97397 5.03145 5.18907 5.32010 5.40490 5.41730 5.58209 5.89435 5.95564 6.19830 6.23424 6.28652 6.46647 6.56342 6.61128 7.13088 7.21813 7.50418 7.57051 8.12838 8.70555 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031148 B = 0.001419 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.711702 B =19727.611529 C =19938.112393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.067 3.933 13 N -0.675 5.675 14 C 0.049 3.951 15 H 0.089 0.911 16 C -0.131 4.131 17 C -0.097 4.097 18 H 0.131 0.869 19 C 0.134 3.866 20 N -0.701 5.701 21 C 0.497 3.503 22 O -0.581 6.581 23 C 0.105 3.895 24 H 0.163 0.837 25 C 0.105 3.895 26 N -0.730 5.730 27 C 0.693 3.307 28 O -0.642 6.642 29 N -0.719 5.719 30 C -0.121 4.121 31 H 0.278 0.722 32 H 0.397 0.603 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.342 0.658 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.423 0.577 41 H 0.144 0.856 42 H 0.095 0.905 43 H 0.440 0.560 44 H 0.433 0.567 45 H 0.065 0.935 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -27.355 2.437 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.065 4.065 13 N -0.308 5.308 14 C -0.060 4.060 15 H 0.107 0.893 16 C -0.170 4.170 17 C -0.116 4.116 18 H 0.149 0.851 19 C 0.010 3.990 20 N -0.354 5.354 21 C 0.282 3.718 22 O -0.460 6.460 23 C -0.004 4.004 24 H 0.180 0.820 25 C -0.019 4.019 26 N -0.393 5.393 27 C 0.391 3.609 28 O -0.524 6.524 29 N -0.380 5.380 30 C -0.160 4.160 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.162 0.838 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.262 0.738 41 H 0.162 0.838 42 H 0.113 0.887 43 H 0.284 0.716 44 H 0.275 0.725 45 H 0.084 0.916 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.165 -27.615 3.257 28.980 hybrid contribution -0.054 1.158 -0.728 1.369 sum -8.218 -26.457 2.528 27.819 Atomic orbital electron populations 1.69655 1.06739 1.29361 1.50179 1.26001 0.96542 1.02289 0.96212 0.85013 0.77799 0.76781 0.78885 1.19746 1.19364 1.19888 1.19629 0.92692 0.84182 1.50175 0.90491 1.41928 1.09326 1.04694 1.65050 1.21023 0.88291 0.86349 0.82094 1.90493 1.16054 1.88029 1.56734 1.21575 0.94049 0.88000 1.02909 1.60256 1.18790 1.00888 1.50841 1.23240 0.97375 0.86647 0.98731 0.89295 1.23164 0.99964 0.94812 0.99055 1.22537 0.99536 0.93373 0.96172 0.85118 1.21261 0.94971 0.91699 0.91082 1.45796 1.13390 1.35024 1.41160 1.21331 0.87321 0.81171 0.82007 1.90779 1.17507 1.70695 1.66980 1.22219 0.91371 0.95764 0.91080 0.82006 1.22618 0.99788 0.80361 0.99127 1.45049 1.40281 1.10635 1.43297 1.16309 0.80836 0.83160 0.80590 1.90959 1.50334 1.56723 1.54360 1.44986 1.43210 1.05134 1.44627 1.23149 1.02441 0.94301 0.96071 0.91266 0.76914 0.91464 0.87940 0.83829 0.89611 0.90662 0.91908 0.93503 0.73834 0.83805 0.88671 0.71633 0.72502 0.91586 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.34 -19.07 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -28.97 5.29 -306.98 -1.62 -30.60 16 10 C 0.43 20.35 7.82 87.66 0.69 21.04 16 11 O -0.63 -34.68 15.78 -3.08 -0.05 -34.73 16 12 C 0.07 2.16 6.02 85.56 0.52 2.67 16 13 N -0.68 -19.65 6.18 -492.85 -3.05 -22.69 16 14 C 0.05 0.90 4.12 45.44 0.19 1.09 16 15 H 0.09 1.34 7.88 -2.39 -0.02 1.33 16 16 C -0.13 -1.87 7.23 31.12 0.22 -1.65 16 17 C -0.10 -0.88 3.75 -10.27 -0.04 -0.92 16 18 H 0.13 0.38 8.14 -2.38 -0.02 0.36 16 19 C 0.13 1.63 5.51 86.38 0.48 2.10 16 20 N -0.70 -4.65 5.56 -463.07 -2.57 -7.23 16 21 C 0.50 6.11 6.94 87.66 0.61 6.72 16 22 O -0.58 -14.41 16.58 -3.03 -0.05 -14.46 16 23 C 0.11 0.58 4.16 44.51 0.19 0.76 16 24 H 0.16 -0.49 8.14 -2.39 -0.02 -0.51 16 25 C 0.11 0.13 7.70 86.65 0.67 0.80 16 26 N -0.73 -6.99 6.37 -477.09 -3.04 -10.03 16 27 C 0.69 13.57 8.92 179.47 1.60 15.17 16 28 O -0.64 -19.59 18.05 -3.99 -0.07 -19.67 16 29 N -0.72 -10.32 5.64 -459.89 -2.59 -12.92 16 30 C -0.12 -1.79 7.44 31.12 0.23 -1.56 16 31 H 0.28 13.83 8.31 -92.71 -0.77 13.05 16 32 H 0.40 18.88 7.90 -92.72 -0.73 18.15 16 33 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 34 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 35 H 0.34 10.77 8.26 -89.69 -0.74 10.02 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.38 8.10 -2.38 -0.02 1.36 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.86 7.85 -2.39 -0.02 0.84 16 40 H 0.42 -0.68 8.47 -92.71 -0.79 -1.47 16 41 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H 0.10 0.04 7.72 -2.39 -0.02 0.02 16 43 H 0.44 2.82 8.96 -92.71 -0.83 1.99 16 44 H 0.43 6.41 8.96 -92.71 -0.83 5.58 16 45 H 0.07 1.38 7.90 -2.39 -0.02 1.36 16 46 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -90.15 390.76 -6.95 -97.10 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -2.84 Total: 31.24 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 6.62 Total: 27.89 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -12.59 Total: -131.94 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: -0.17 Total: -68.86 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -90.15 -6.95 -97.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479312908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.034 kcal (2) G-P(sol) polarization free energy of solvation -90.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds