Wall clock time and date at job start Tue Mar 31 2020 22:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46851 * 110.99872 * 66.04706 * 13 12 10 15 15 C 1.53040 * 109.52400 * 174.16130 * 14 13 12 16 16 C 1.53121 * 109.27937 * 59.17623 * 15 14 13 17 17 C 1.53119 * 109.15914 * 302.34798 * 16 15 14 18 18 H 1.08997 * 109.50656 * 297.71073 * 17 16 15 19 19 N 1.46507 * 109.50013 * 177.59395 * 17 16 15 20 20 C 1.34776 * 119.99606 * 85.00202 * 19 17 16 21 21 O 1.21279 * 120.00607 * 359.97438 * 20 19 17 22 22 C 1.50709 * 119.99710 * 179.97438 * 20 19 17 23 23 H 1.08996 * 110.48704 * 38.75076 * 22 20 19 24 24 C 1.54104 * 110.54888 * 275.89341 * 22 20 19 25 25 N 1.47046 * 103.86348 * 241.40674 * 24 22 20 26 26 C 1.33947 * 109.17938 * 0.02562 * 25 24 22 27 27 O 1.21591 * 123.04178 * 180.02562 * 26 25 24 28 28 N 1.33945 * 113.91549 * 359.97438 * 26 25 24 29 29 C 1.46844 * 111.00403 * 301.83852 * 13 12 10 30 30 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 32 32 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 33 33 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 34 34 H 1.08998 * 109.46194 * 294.17226 * 14 13 12 35 35 H 1.08994 * 109.46423 * 54.14506 * 14 13 12 36 36 H 1.08998 * 109.50574 * 179.12403 * 15 14 13 37 37 H 1.09001 * 109.50223 * 299.23832 * 15 14 13 38 38 H 1.08995 * 109.52571 * 62.25458 * 16 15 14 39 39 H 1.08998 * 109.52333 * 182.38137 * 16 15 14 40 40 H 0.96996 * 120.00060 * 265.00017 * 19 17 16 41 41 H 1.09008 * 110.54520 * 0.02562 * 24 22 20 42 42 H 1.09004 * 110.54474 * 122.80891 * 24 22 20 43 43 H 0.97002 * 125.41023 * 180.02562 * 25 24 22 44 44 H 0.97010 * 125.40860 * 180.02562 * 28 26 25 45 45 H 1.09001 * 109.45981 * 305.85324 * 29 13 12 46 46 H 1.09002 * 109.46484 * 65.81759 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 2.9632 -6.0116 1.2779 15 6 3.8396 -7.2659 1.3100 16 6 4.7905 -7.2491 0.1100 17 6 3.9700 -7.1665 -1.1802 18 1 3.3402 -8.0517 -1.2683 19 7 4.8740 -7.0921 -2.3307 20 6 5.3703 -8.2223 -2.8719 21 8 5.0691 -9.3008 -2.4062 22 6 6.2998 -8.1457 -4.0558 23 1 6.9811 -7.3013 -3.9519 24 6 5.4976 -8.0396 -5.3673 25 7 5.8829 -9.2459 -6.1146 26 6 6.7579 -9.9532 -5.3877 27 8 7.2426 -11.0011 -5.7690 28 7 7.0516 -9.4009 -4.2033 29 6 3.0899 -5.9152 -1.1401 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0068 32 1 0.6167 -4.9161 0.9093 33 1 0.6173 -4.9251 -0.8706 34 1 3.5949 -5.1256 1.3406 35 1 2.2752 -6.0276 2.1231 36 1 4.4188 -7.2815 2.2332 37 1 3.2077 -8.1527 1.2612 38 1 5.4489 -6.3832 0.1790 39 1 5.3874 -8.1610 0.1054 40 1 5.1152 -6.2295 -2.7030 41 1 4.4270 -8.0418 -5.1621 42 1 5.7807 -7.1420 -5.9172 43 1 5.5555 -9.4907 -6.9942 44 1 7.6632 -9.7702 -3.5471 45 1 2.4939 -5.8611 -2.0512 46 1 3.7210 -5.0295 -1.0661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481536776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:31 Heat of formation + Delta-G solvation = -78.091118 kcal Electronic energy + Delta-G solvation = -29852.640772 eV Core-core repulsion = 25584.637452 eV Total energy + Delta-G solvation = -4268.003320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62344 -40.00302 -39.09235 -37.40449 -36.44161 -34.85320 -33.99109 -33.34592 -32.56106 -31.39937 -30.42905 -28.75817 -27.39307 -24.80261 -24.53209 -22.84163 -22.52282 -22.09428 -20.71793 -19.97504 -19.30071 -18.31817 -18.02146 -17.80389 -16.71477 -16.32202 -16.13281 -15.91175 -15.29000 -15.22799 -14.79283 -14.74289 -14.49683 -14.33042 -14.17584 -14.02389 -13.96661 -13.52168 -13.36094 -13.15793 -13.07653 -12.58300 -12.44931 -11.97136 -11.64589 -11.37016 -11.27564 -10.99109 -10.72675 -10.63541 -10.62213 -10.47009 -10.45471 -10.37316 -10.28875 -9.72596 -9.59393 -9.33569 -9.20498 -9.16663 -8.11471 -7.52840 -6.56221 -3.98015 2.14305 2.44585 2.68596 3.00316 3.04325 3.16929 3.22656 3.64152 3.70351 3.85417 4.04741 4.17846 4.36979 4.41656 4.82181 4.84317 4.95595 4.98670 5.07177 5.10960 5.15399 5.23655 5.32499 5.61387 5.68254 5.73540 5.83558 5.94065 6.04783 6.05434 6.10847 6.17048 6.27510 6.33826 6.46609 6.62240 6.63986 6.79585 7.01173 7.21475 7.29817 7.34116 7.40613 7.89766 7.93523 8.30374 8.43769 9.01715 9.37633 9.87221 10.60102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002351 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.392627 B =11907.473308 C =12997.764015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.405 3.595 11 O -0.596 6.596 12 C 0.042 3.958 13 N -0.510 5.510 14 C 0.039 3.961 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.151 3.849 18 H 0.090 0.910 19 N -0.715 5.715 20 C 0.502 3.498 21 O -0.522 6.522 22 C 0.102 3.898 23 H 0.117 0.883 24 C 0.104 3.896 25 N -0.739 5.739 26 C 0.706 3.294 27 O -0.585 6.585 28 N -0.714 5.714 29 C 0.028 3.972 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.403 0.597 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.433 0.567 44 H 0.434 0.566 45 H 0.067 0.933 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -10.948 -6.473 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.189 5.189 10 C 0.190 3.810 11 O -0.484 6.484 12 C -0.090 4.090 13 N -0.233 5.233 14 C -0.089 4.089 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.047 3.953 18 H 0.108 0.892 19 N -0.367 5.367 20 C 0.285 3.715 21 O -0.397 6.397 22 C -0.008 4.008 23 H 0.135 0.865 24 C -0.021 4.021 25 N -0.402 5.402 26 C 0.405 3.595 27 O -0.463 6.463 28 N -0.376 5.376 29 C -0.101 4.101 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.237 0.763 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.275 0.725 44 H 0.277 0.723 45 H 0.085 0.915 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.328 -12.542 -6.349 15.853 hybrid contribution 0.223 2.087 -0.047 2.100 sum 7.552 -10.455 -6.395 14.396 Atomic orbital electron populations 1.69617 1.05992 1.28321 1.49716 1.25307 0.95632 0.99896 0.96968 0.85808 0.79655 0.81071 0.77856 1.19240 1.20643 1.20652 1.19747 0.93378 0.82327 1.47856 0.87888 1.42080 1.09379 1.04970 1.62448 1.21079 0.88804 0.85944 0.85133 1.90370 1.13898 1.86837 1.57263 1.22043 0.95298 0.87947 1.03665 1.62328 1.17875 1.40556 1.02515 1.22279 0.96777 0.98367 0.91444 1.21487 0.97381 0.98604 0.97301 1.21905 0.98304 1.01880 0.94406 1.20988 0.90268 1.00095 0.83977 0.89180 1.46041 1.48730 1.08691 1.33207 1.20675 0.81677 0.84697 0.84497 1.90763 1.58617 1.28139 1.62164 1.21885 0.94199 0.90332 0.94428 0.86489 1.22261 1.00264 0.89931 0.89690 1.45043 1.48395 1.25000 1.21767 1.15852 0.79619 0.82949 0.81068 1.91007 1.58487 1.22793 1.74015 1.44812 1.48389 1.24591 1.19838 1.22567 0.96147 0.97686 0.93655 0.91715 0.77329 0.89136 0.89233 0.91220 0.91507 0.91570 0.91551 0.91657 0.92019 0.76265 0.89317 0.88414 0.72529 0.72349 0.91485 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.09 13.05 55.50 0.72 -22.37 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 19.82 29.55 -169.99 -5.02 14.79 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -7.84 9.68 -14.93 -0.14 -7.98 16 8 H 0.10 2.80 7.16 -52.49 -0.38 2.42 16 9 N -0.55 -12.84 5.29 -10.96 -0.06 -12.90 16 10 C 0.40 8.39 7.20 -10.98 -0.08 8.31 16 11 O -0.60 -13.65 11.20 5.55 0.06 -13.58 16 12 C 0.04 0.67 5.86 -4.98 -0.03 0.64 16 13 N -0.51 -7.60 4.86 -236.12 -1.15 -8.75 16 14 C 0.04 0.58 5.09 -3.83 -0.02 0.56 16 15 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 16 C -0.13 -1.57 5.58 -26.61 -0.15 -1.72 16 17 C 0.15 1.85 2.61 -67.85 -0.18 1.67 16 18 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 19 N -0.72 -6.68 5.08 -53.72 -0.27 -6.95 16 20 C 0.50 5.03 6.90 -10.98 -0.08 4.96 16 21 O -0.52 -7.58 16.26 5.56 0.09 -7.49 16 22 C 0.10 0.70 4.17 -68.20 -0.28 0.42 16 23 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 24 C 0.10 0.57 7.70 -3.17 -0.02 0.55 16 25 N -0.74 -5.84 6.37 -64.70 -0.41 -6.25 16 26 C 0.71 8.26 8.92 -88.40 -0.79 7.47 16 27 O -0.59 -9.38 18.05 5.29 0.10 -9.29 16 28 N -0.71 -6.70 5.63 -59.33 -0.33 -7.03 16 29 C 0.03 0.39 4.44 -3.84 -0.02 0.37 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.39 8.83 7.90 -40.82 -0.32 8.51 16 32 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.25 6.00 -51.93 -0.31 0.93 16 35 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.40 2.85 8.60 -40.82 -0.35 2.50 16 41 H 0.09 0.49 7.72 -51.92 -0.40 0.09 16 42 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.43 2.64 8.96 -40.82 -0.37 2.27 16 44 H 0.43 3.79 8.96 -40.82 -0.37 3.42 16 45 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 46 H 0.09 1.54 5.36 -51.93 -0.28 1.26 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -34.35 374.21 -9.20 -43.55 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -6.52 Total: 16.38 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: -2.05 Total: 14.24 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -1.50 Total: -64.25 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: 0.25 Total: -30.36 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.35 -9.20 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481536776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.540 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds