Wall clock time and date at job start Tue Mar 31 2020 22:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46780 * 299.99915 * 3 2 1 6 6 H 1.48495 * 109.46909 * 59.99515 * 3 2 1 7 7 C 1.38945 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 359.72318 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46851 * 110.99872 * 66.04706 * 13 12 10 15 15 C 1.53040 * 109.52400 * 174.16130 * 14 13 12 16 16 C 1.53121 * 109.27937 * 59.17623 * 15 14 13 17 17 C 1.53119 * 109.15914 * 302.34798 * 16 15 14 18 18 H 1.08997 * 109.50656 * 297.71073 * 17 16 15 19 19 N 1.46507 * 109.50013 * 177.59395 * 17 16 15 20 20 C 1.34776 * 119.99606 * 85.00202 * 19 17 16 21 21 O 1.21279 * 120.00607 * 359.97438 * 20 19 17 22 22 C 1.50709 * 119.99710 * 179.97438 * 20 19 17 23 23 H 1.08996 * 110.48704 * 38.75076 * 22 20 19 24 24 C 1.54104 * 110.54888 * 275.89341 * 22 20 19 25 25 N 1.47046 * 103.86348 * 241.40674 * 24 22 20 26 26 C 1.33947 * 109.17938 * 0.02562 * 25 24 22 27 27 O 1.21591 * 123.04178 * 180.02562 * 26 25 24 28 28 N 1.33945 * 113.91549 * 359.97438 * 26 25 24 29 29 C 1.46844 * 111.00403 * 301.83852 * 13 12 10 30 30 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 32 32 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 33 33 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 34 34 H 1.08998 * 109.46194 * 294.17226 * 14 13 12 35 35 H 1.08994 * 109.46423 * 54.14506 * 14 13 12 36 36 H 1.08998 * 109.50574 * 179.12403 * 15 14 13 37 37 H 1.09001 * 109.50223 * 299.23832 * 15 14 13 38 38 H 1.08995 * 109.52571 * 62.25458 * 16 15 14 39 39 H 1.08998 * 109.52333 * 182.38137 * 16 15 14 40 40 H 0.96996 * 120.00060 * 265.00017 * 19 17 16 41 41 H 1.09008 * 110.54520 * 0.02562 * 24 22 20 42 42 H 1.09004 * 110.54474 * 122.80891 * 24 22 20 43 43 H 0.97002 * 125.41023 * 180.02562 * 25 24 22 44 44 H 0.97010 * 125.40860 * 180.02562 * 28 26 25 45 45 H 1.09001 * 109.45981 * 305.85324 * 29 13 12 46 46 H 1.09002 * 109.46484 * 65.81759 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0068 10 6 1.9972 -3.5579 0.0130 11 8 3.2101 -3.5578 0.0135 12 6 1.2436 -4.8629 0.0193 13 7 2.1982 -5.9794 0.0248 14 6 2.9632 -6.0116 1.2779 15 6 3.8396 -7.2659 1.3100 16 6 4.7905 -7.2491 0.1100 17 6 3.9700 -7.1665 -1.1802 18 1 3.3402 -8.0517 -1.2683 19 7 4.8740 -7.0921 -2.3307 20 6 5.3703 -8.2223 -2.8719 21 8 5.0691 -9.3008 -2.4062 22 6 6.2998 -8.1457 -4.0558 23 1 6.9811 -7.3013 -3.9519 24 6 5.4976 -8.0396 -5.3673 25 7 5.8829 -9.2459 -6.1146 26 6 6.7579 -9.9532 -5.3877 27 8 7.2426 -11.0011 -5.7690 28 7 7.0516 -9.4009 -4.2033 29 6 3.0899 -5.9152 -1.1401 30 1 -0.4850 0.8401 -0.0004 31 1 0.3533 -2.3906 0.0068 32 1 0.6167 -4.9161 0.9093 33 1 0.6173 -4.9251 -0.8706 34 1 3.5949 -5.1256 1.3406 35 1 2.2752 -6.0276 2.1231 36 1 4.4188 -7.2815 2.2332 37 1 3.2077 -8.1527 1.2612 38 1 5.4489 -6.3832 0.1790 39 1 5.3874 -8.1610 0.1054 40 1 5.1152 -6.2295 -2.7030 41 1 4.4270 -8.0418 -5.1621 42 1 5.7807 -7.1420 -5.9172 43 1 5.5555 -9.4907 -6.9942 44 1 7.6632 -9.7702 -3.5471 45 1 2.4939 -5.8611 -2.0512 46 1 3.7210 -5.0295 -1.0661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481536776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:30 Heat of formation + Delta-G solvation = -109.903533 kcal Electronic energy + Delta-G solvation = -29854.020261 eV Core-core repulsion = 25584.637452 eV Total energy + Delta-G solvation = -4269.382809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.37382 -41.18076 -40.28990 -38.75534 -37.36007 -36.15427 -35.53265 -34.02987 -33.73228 -33.22384 -31.35635 -29.62257 -28.79114 -26.48572 -25.26127 -24.07445 -23.51469 -22.83865 -21.60703 -21.23104 -20.78797 -19.79092 -19.12322 -18.60279 -17.75242 -17.54132 -17.22282 -16.78284 -16.63271 -16.22764 -16.12985 -15.93612 -15.64115 -15.59945 -15.43229 -15.08683 -15.00221 -14.78381 -14.41803 -14.23106 -13.90307 -13.67325 -13.44920 -13.29797 -13.19070 -12.99031 -12.51534 -12.39447 -12.22926 -12.10917 -11.85349 -11.77079 -11.59804 -11.50585 -11.33946 -11.27727 -10.91264 -10.56358 -10.10351 -9.96618 -9.84360 -8.98050 -8.44235 -5.93638 1.36283 1.37521 1.43250 1.55774 1.67842 1.94406 2.03836 2.16470 2.29931 3.00308 3.10813 3.22437 3.28281 3.31066 3.55498 3.85792 3.93218 3.99835 4.07645 4.20024 4.34872 4.43473 4.49114 4.56857 4.58076 4.65155 4.70007 4.70441 4.76340 4.96346 4.99482 5.08412 5.17580 5.22831 5.37060 5.42529 5.49282 5.89109 5.91866 6.07695 6.12176 6.19319 6.26675 6.51680 6.60724 7.13892 7.15568 7.50355 7.58140 8.11520 8.71111 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002351 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.392627 B =11907.473308 C =12997.764015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.989 3.011 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.276 1.276 7 C -0.327 4.327 8 H 0.081 0.919 9 N -0.570 5.570 10 C 0.411 3.589 11 O -0.616 6.616 12 C 0.050 3.950 13 N -0.505 5.505 14 C 0.041 3.959 15 C -0.104 4.104 16 C -0.122 4.122 17 C 0.162 3.838 18 H 0.077 0.923 19 N -0.703 5.703 20 C 0.505 3.495 21 O -0.569 6.569 22 C 0.107 3.893 23 H 0.159 0.841 24 C 0.104 3.896 25 N -0.729 5.729 26 C 0.695 3.305 27 O -0.639 6.639 28 N -0.714 5.714 29 C 0.035 3.965 30 H 0.276 0.724 31 H 0.395 0.605 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.417 0.583 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.440 0.560 44 H 0.434 0.566 45 H 0.076 0.924 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -10.308 -7.103 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.813 3.187 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.457 4.457 8 H 0.099 0.901 9 N -0.207 5.207 10 C 0.198 3.802 11 O -0.504 6.504 12 C -0.082 4.082 13 N -0.227 5.227 14 C -0.087 4.087 15 C -0.142 4.142 16 C -0.160 4.160 17 C 0.056 3.944 18 H 0.095 0.905 19 N -0.356 5.356 20 C 0.290 3.710 21 O -0.447 6.447 22 C -0.003 4.003 23 H 0.177 0.823 24 C -0.021 4.021 25 N -0.392 5.392 26 C 0.393 3.607 27 O -0.521 6.521 28 N -0.374 5.374 29 C -0.094 4.094 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.254 0.746 41 H 0.110 0.890 42 H 0.158 0.842 43 H 0.284 0.716 44 H 0.277 0.723 45 H 0.094 0.906 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.306 -11.854 -6.990 15.580 hybrid contribution 0.235 1.820 0.186 1.845 sum 7.540 -10.033 -6.804 14.276 Atomic orbital electron populations 1.69679 1.06849 1.29144 1.50398 1.26008 0.96445 1.02417 0.96478 0.84921 0.78179 0.77458 0.78115 1.19586 1.19776 1.20140 1.19673 0.92675 0.83996 1.49353 0.90077 1.42158 1.09417 1.05038 1.64065 1.22060 0.88788 0.86889 0.82488 1.90383 1.15295 1.87512 1.57231 1.22132 0.95319 0.85142 1.05575 1.62411 1.18067 1.39329 1.02930 1.22256 0.96689 0.98031 0.91683 1.21463 0.97221 0.97510 0.98043 1.21851 0.98159 1.01455 0.94569 1.20706 0.90305 0.98388 0.84977 0.90511 1.45886 1.47906 1.09466 1.32299 1.21224 0.81259 0.83784 0.84760 1.90753 1.60344 1.29853 1.63796 1.22158 0.94170 0.90428 0.93546 0.82333 1.22574 1.00299 0.90283 0.88926 1.45049 1.47052 1.25257 1.21858 1.16173 0.79992 0.82655 0.81832 1.90957 1.60602 1.25241 1.75320 1.44859 1.48117 1.25330 1.19140 1.22480 0.95895 0.97373 0.93628 0.91416 0.77104 0.87354 0.87064 0.94477 0.90748 0.90263 0.91012 0.92314 0.92036 0.74615 0.89018 0.84198 0.71636 0.72344 0.90606 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.24 13.05 21.66 0.28 -46.96 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 3 Si 0.99 40.44 29.55 68.60 2.03 42.47 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.33 -17.11 9.68 84.04 0.81 -16.29 16 8 H 0.08 4.51 7.16 -2.91 -0.02 4.49 16 9 N -0.57 -26.53 5.29 -306.98 -1.62 -28.16 16 10 C 0.41 16.88 7.20 87.66 0.63 17.52 16 11 O -0.62 -28.38 11.20 -3.07 -0.03 -28.41 16 12 C 0.05 1.51 5.86 85.56 0.50 2.01 16 13 N -0.50 -14.29 4.86 -900.96 -4.38 -18.67 16 14 C 0.04 1.18 5.09 86.33 0.44 1.62 16 15 C -0.10 -2.47 6.09 30.65 0.19 -2.28 16 16 C -0.12 -2.89 5.58 30.67 0.17 -2.72 16 17 C 0.16 3.73 2.61 45.04 0.12 3.85 16 18 H 0.08 2.05 7.58 -2.39 -0.02 2.03 16 19 N -0.70 -11.73 5.08 -442.27 -2.25 -13.98 16 20 C 0.51 9.20 6.90 87.66 0.60 9.81 16 21 O -0.57 -16.10 16.26 -3.03 -0.05 -16.15 16 22 C 0.11 1.17 4.17 44.52 0.19 1.36 16 23 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 24 C 0.10 0.79 7.70 86.65 0.67 1.46 16 25 N -0.73 -10.20 6.37 -477.34 -3.04 -13.25 16 26 C 0.70 15.81 8.92 179.57 1.60 17.41 16 27 O -0.64 -20.93 18.05 -4.00 -0.07 -21.00 16 28 N -0.71 -12.53 5.63 -460.34 -2.59 -15.12 16 29 C 0.03 0.92 4.44 86.32 0.38 1.31 16 30 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 31 H 0.40 17.76 7.90 -92.71 -0.73 17.03 16 32 H 0.11 2.95 8.06 -2.39 -0.02 2.93 16 33 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.04 1.32 6.00 -2.39 -0.01 1.31 16 35 H 0.07 1.99 8.06 -2.39 -0.02 1.97 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.42 4.80 8.60 -92.71 -0.80 4.00 16 41 H 0.09 0.72 7.72 -2.38 -0.02 0.70 16 42 H 0.14 0.02 8.14 -2.38 -0.02 0.00 16 43 H 0.44 4.68 8.96 -92.71 -0.83 3.85 16 44 H 0.43 7.37 8.96 -92.70 -0.83 6.54 16 45 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 46 H 0.07 2.19 5.36 -2.39 -0.01 2.17 16 Total: -1.00 -76.91 374.21 -7.08 -83.98 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -2.12 Total: 40.40 kcal Atomic # 6 Polarization: 28.06 SS G_CDS: 6.77 Total: 34.83 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -13.60 Total: -136.12 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: -0.16 Total: -65.56 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -76.91 -7.08 -83.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481536776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.922 kcal (2) G-P(sol) polarization free energy of solvation -76.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds