Wall clock time and date at job start Tue Mar 31 2020 22:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46502 * 114.17188 * 139.67018 * 15 14 13 17 17 C 1.34777 * 119.99942 * 111.15947 * 16 15 14 18 18 O 1.21281 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99991 * 179.97438 * 17 16 15 20 20 N 1.46896 * 109.47144 * 180.02562 * 19 17 16 21 21 C 1.47185 * 111.00125 * 170.00591 * 20 19 17 22 22 C 1.52981 * 108.73110 * 54.36663 * 21 20 19 23 23 N 1.46007 * 110.04312 * 50.29652 * 22 21 20 24 24 C 1.33721 * 122.92525 * 341.84026 * 23 22 21 25 25 O 1.21281 * 118.62789 * 181.69270 * 24 23 22 26 26 C 1.46907 * 111.00171 * 292.89783 * 20 19 17 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 0.96992 * 119.99938 * 291.16113 * 16 15 14 36 36 H 1.08998 * 109.47513 * 300.00707 * 19 17 16 37 37 H 1.09005 * 109.46616 * 60.00448 * 19 17 16 38 38 H 1.09001 * 109.59651 * 174.14450 * 21 20 19 39 39 H 1.09002 * 109.59224 * 294.59094 * 21 20 19 40 40 H 1.09005 * 109.37378 * 170.46802 * 22 21 20 41 41 H 1.09000 * 109.37679 * 290.12012 * 22 21 20 42 42 H 0.96999 * 118.54030 * 161.81403 * 23 22 21 43 43 H 1.08992 * 109.38852 * 47.08574 * 26 20 19 44 44 H 1.09003 * 109.38681 * 166.77977 * 26 20 19 45 45 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 46 46 H 1.08997 * 113.47572 * 23.87318 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7167 -8.8212 -1.7334 17 6 2.4131 -9.7859 -2.3666 18 8 3.6116 -9.8752 -2.2035 19 6 1.7023 -10.7543 -3.2766 20 7 2.6747 -11.7001 -3.8404 21 6 1.9942 -12.8010 -4.5415 22 6 1.0437 -12.2071 -5.5827 23 7 1.7491 -11.2263 -6.4026 24 6 2.9046 -10.6650 -6.0313 25 8 3.4080 -9.8356 -6.7590 26 6 3.6055 -11.0187 -4.7501 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 0.7582 -8.7501 -1.8636 36 1 0.9506 -11.3021 -2.7083 37 1 1.2184 -10.2053 -4.0845 38 1 2.7330 -13.4303 -5.0378 39 1 1.4268 -13.3951 -3.8252 40 1 0.6624 -13.0045 -6.2207 41 1 0.2096 -11.7218 -5.0758 42 1 1.3626 -10.9708 -7.2548 43 1 3.9738 -10.1090 -4.2761 44 1 4.4462 -11.6775 -4.9676 45 1 1.6894 -7.6711 1.2299 46 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481574470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:02 Heat of formation + Delta-G solvation = -77.384045 kcal Electronic energy + Delta-G solvation = -29061.367325 eV Core-core repulsion = 24793.394666 eV Total energy + Delta-G solvation = -4267.972659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02051 -41.52679 -40.20852 -39.47603 -38.24546 -35.98381 -35.22225 -35.03410 -33.30638 -31.48491 -30.86183 -29.73301 -27.33633 -26.96294 -26.12220 -24.99893 -23.81495 -21.91472 -21.36470 -21.02883 -20.09315 -19.92486 -18.47731 -18.39324 -17.90783 -17.57327 -17.43173 -16.89964 -16.60436 -16.57221 -16.24408 -16.09086 -15.91030 -15.65324 -15.49747 -15.15985 -14.81731 -14.63127 -14.30485 -14.03093 -13.74359 -13.69656 -13.52700 -13.50234 -13.04875 -12.82741 -12.75836 -12.68572 -12.44783 -12.32641 -12.26222 -12.13355 -11.84862 -11.65753 -11.51940 -10.92323 -10.41020 -10.19572 -10.08344 -10.02441 -9.78518 -9.38385 -8.48532 -5.96908 1.35998 1.39615 1.40937 1.52384 1.60007 1.90669 2.04676 2.16073 2.28268 2.78602 2.93082 3.17447 3.30318 3.49430 3.51954 3.67981 3.78498 3.88082 4.01908 4.08067 4.20929 4.25317 4.27460 4.29864 4.39244 4.40566 4.51863 4.53490 4.69390 4.71270 4.77506 4.78326 4.93920 5.00115 5.32310 5.39001 5.43292 5.53043 5.75541 5.85169 5.86803 6.06098 6.15991 6.56980 6.59837 7.04381 7.12100 7.28076 7.55335 8.12878 8.68865 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.001906 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.307563 B =14688.577527 C =15316.374320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.267 1.267 6 H -0.276 1.276 7 C -0.334 4.334 8 H 0.074 0.926 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.026 3.974 13 N -0.476 5.476 14 C -0.015 4.015 15 C 0.136 3.864 16 N -0.703 5.703 17 C 0.506 3.494 18 O -0.565 6.565 19 C 0.033 3.967 20 N -0.517 5.517 21 C 0.035 3.965 22 C 0.065 3.935 23 N -0.714 5.714 24 C 0.483 3.517 25 O -0.607 6.607 26 C 0.043 3.957 27 C 0.005 3.995 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.419 0.581 36 H 0.155 0.845 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.403 0.597 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.104 0.896 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 -31.526 -8.407 34.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.200 1.200 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.213 5.213 10 C 0.225 3.775 11 O -0.509 6.509 12 C -0.105 4.105 13 N -0.199 5.199 14 C -0.145 4.145 15 C 0.029 3.971 16 N -0.357 5.357 17 C 0.293 3.707 18 O -0.443 6.443 19 C -0.098 4.098 20 N -0.240 5.240 21 C -0.092 4.092 22 C -0.059 4.059 23 N -0.366 5.366 24 C 0.269 3.731 25 O -0.488 6.488 26 C -0.088 4.088 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.257 0.743 36 H 0.173 0.827 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.239 0.761 43 H 0.112 0.888 44 H 0.137 0.863 45 H 0.122 0.878 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.583 -31.056 -7.586 32.856 hybrid contribution -1.341 1.798 -1.645 2.781 sum -8.924 -29.258 -9.231 31.951 Atomic orbital electron populations 1.69657 1.06652 1.29285 1.50369 1.26004 0.96607 1.02260 0.96325 0.84956 0.77886 0.77035 0.78634 1.19703 1.19197 1.20050 1.19619 0.92564 0.84198 1.50000 0.90802 1.41923 1.09293 1.04610 1.65430 1.20920 0.88285 0.86157 0.82106 1.90506 1.16237 1.87982 1.56159 1.22379 0.94064 0.89516 1.04583 1.68708 1.32073 1.01680 1.17437 1.24450 1.02113 0.95740 0.92225 1.22220 0.97775 0.86481 0.90651 1.45742 1.12361 1.30899 1.46670 1.21231 0.87629 0.81270 0.80526 1.90721 1.16721 1.73053 1.63803 1.22222 0.95055 0.94397 0.98081 1.62210 1.17889 1.10568 1.33351 1.22878 0.97611 0.92787 0.95963 1.22495 0.95823 0.92571 0.94973 1.45709 1.22745 1.43846 1.24273 1.21651 0.81896 0.80130 0.89384 1.90766 1.66258 1.35678 1.56090 1.22421 0.97025 1.02202 0.87194 1.24329 0.98710 0.88539 1.00804 0.91248 0.76859 0.86534 0.89416 0.89632 0.92915 0.87591 0.74258 0.82703 0.90517 0.88913 0.84724 0.86749 0.89016 0.76075 0.88775 0.86284 0.87764 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.92 29.55 68.60 2.03 45.95 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 8 H 0.07 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -30.02 5.29 -306.98 -1.62 -31.65 16 10 C 0.44 21.55 7.85 87.66 0.69 22.24 16 11 O -0.62 -36.84 16.01 -3.08 -0.05 -36.89 16 12 C 0.03 0.88 5.30 85.56 0.45 1.33 16 13 N -0.48 -15.27 5.82 -932.63 -5.43 -20.70 16 14 C -0.01 -0.44 7.52 83.57 0.63 0.19 16 15 C 0.14 3.02 4.59 45.44 0.21 3.23 16 16 N -0.70 -10.38 5.39 -441.69 -2.38 -12.76 16 17 C 0.51 9.27 7.43 87.66 0.65 9.92 16 18 O -0.57 -16.30 14.12 -3.03 -0.04 -16.34 16 19 C 0.03 0.29 4.51 85.56 0.39 0.68 16 20 N -0.52 -5.91 4.75 -905.47 -4.30 -10.21 16 21 C 0.03 0.09 6.02 86.24 0.52 0.61 16 22 C 0.07 0.05 6.46 86.47 0.56 0.61 16 23 N -0.71 -7.27 5.33 -466.08 -2.48 -9.75 16 24 C 0.48 9.67 7.06 87.68 0.62 10.29 16 25 O -0.61 -19.11 17.82 -3.03 -0.05 -19.16 16 26 C 0.04 0.79 5.49 85.42 0.47 1.26 16 27 C 0.01 0.10 7.45 83.57 0.62 0.72 16 28 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 30 H 0.12 3.26 8.08 -2.39 -0.02 3.24 16 31 H 0.09 2.43 7.30 -2.39 -0.02 2.41 16 32 H 0.09 2.18 7.42 -2.39 -0.02 2.17 16 33 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.11 2.96 7.46 -2.39 -0.02 2.94 16 35 H 0.42 2.81 8.75 -92.71 -0.81 2.00 16 36 H 0.16 0.07 8.08 -2.39 -0.02 0.05 16 37 H 0.08 0.59 6.23 -2.38 -0.01 0.58 16 38 H 0.09 0.29 8.08 -2.39 -0.02 0.27 16 39 H 0.13 -0.41 8.14 -2.39 -0.02 -0.42 16 40 H 0.11 -0.44 8.14 -2.38 -0.02 -0.46 16 41 H 0.09 -0.22 7.10 -2.39 -0.02 -0.23 16 42 H 0.40 3.80 8.84 -92.71 -0.82 2.98 16 43 H 0.09 2.46 5.88 -2.39 -0.01 2.44 16 44 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.11 1.33 7.90 -2.39 -0.02 1.31 16 Total: -1.00 -92.05 378.51 -8.27 -100.33 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -1.31 Total: 28.48 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 7.09 Total: 32.19 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -15.93 Total: -134.57 kcal Atomic # 8 Polarization: -72.24 SS G_CDS: -0.15 Total: -72.39 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -92.05 -8.27 -100.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481574470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.944 kcal (2) G-P(sol) polarization free energy of solvation -92.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds