Wall clock time and date at job start Tue Mar 31 2020 22:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48504 * 109.46615 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47374 * 299.99989 * 3 2 1 6 6 H 1.48495 * 109.47187 * 60.00378 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 H 1.08995 * 109.47026 * 305.00375 * 11 10 9 13 13 C 1.53005 * 109.46813 * 65.00101 * 11 10 9 14 14 C 1.52998 * 109.46813 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47470 * 299.99681 * 14 13 11 16 16 C 1.53001 * 109.46855 * 59.99798 * 15 14 13 17 17 C 1.52994 * 109.47095 * 184.99775 * 11 10 9 18 18 H 1.09000 * 109.47321 * 60.00349 * 17 11 10 19 19 N 1.46504 * 109.47434 * 300.00289 * 17 11 10 20 20 C 1.34769 * 120.00345 * 155.00112 * 19 17 11 21 21 O 1.21280 * 120.00224 * 359.97438 * 20 19 17 22 22 C 1.50704 * 119.99872 * 179.97438 * 20 19 17 23 23 N 1.46505 * 109.46733 * 179.97438 * 22 20 19 24 24 C 1.36368 * 125.96784 * 269.68554 * 23 22 20 25 25 O 1.35637 * 125.98377 * 0.04371 * 24 23 22 26 26 N 1.30902 * 108.02633 * 179.88677 * 24 23 22 27 27 N 1.40111 * 107.93795 * 0.38066 * 26 24 23 28 28 C 1.30906 * 107.94172 * 359.75532 * 27 26 24 29 29 O 1.35626 * 125.98790 * 180.02562 * 28 27 26 30 30 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 32 32 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 33 33 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 34 34 H 1.09000 * 109.47034 * 299.99245 * 13 11 10 35 35 H 1.08991 * 109.47325 * 59.99870 * 13 11 10 36 36 H 1.09008 * 109.47327 * 60.00103 * 14 13 11 37 37 H 1.09005 * 109.47195 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.47559 * 179.97438 * 15 14 13 39 39 H 1.09008 * 109.47190 * 300.00505 * 15 14 13 40 40 H 1.08999 * 109.47210 * 60.00494 * 16 15 14 41 41 H 1.09001 * 109.47251 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99280 * 335.00098 * 19 17 11 43 43 H 1.08996 * 109.47346 * 299.99760 * 22 20 19 44 44 H 1.08999 * 109.47096 * 59.99924 * 22 20 19 45 45 H 0.96700 * 113.99601 * 89.99501 * 25 24 23 46 46 H 0.96700 * 114.00135 * 269.97705 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 1 0.3835 -4.7108 0.8508 13 6 0.2639 -4.8143 -1.2977 14 6 -0.7298 -5.9777 -1.2910 15 6 0.0321 -7.2985 -1.1656 16 6 0.8324 -7.3038 0.1384 17 6 1.8256 -6.1408 0.1321 18 1 2.3957 -6.1446 1.0611 19 7 2.7404 -6.2871 -1.0028 20 6 3.8402 -7.0573 -0.8869 21 8 4.0730 -7.6289 0.1571 22 6 4.7809 -7.2082 -2.0546 23 7 5.8899 -8.0883 -1.6776 24 6 7.0735 -7.6942 -1.1269 25 8 7.4298 -6.4192 -0.8316 26 7 7.8043 -8.7623 -0.9302 27 7 7.0741 -9.8725 -1.3743 28 6 5.9209 -9.4440 -1.8218 29 8 4.9306 -10.2135 -2.3380 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 0.0039 32 1 2.6812 -3.7165 -0.8930 33 1 2.6887 -3.7123 0.8869 34 1 -0.2786 -3.8732 -1.3872 35 1 0.9445 -4.9232 -2.1420 36 1 -1.4105 -5.8693 -0.4465 37 1 -1.3002 -5.9737 -2.2198 38 1 -0.6759 -8.1273 -1.1604 39 1 0.7128 -7.4069 -2.0101 40 1 0.1518 -7.1955 0.9829 41 1 1.3755 -8.2447 0.2276 42 1 2.5544 -5.8296 -1.8377 43 1 4.2448 -7.6402 -2.8996 44 1 5.1725 -6.2302 -2.3344 45 1 7.1872 -6.1400 0.0619 46 1 4.9910 -10.3429 -3.2944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483441873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:41 Heat of formation + Delta-G solvation = -18.721523 kcal Electronic energy + Delta-G solvation = -30452.245801 eV Core-core repulsion = 26186.816941 eV Total energy + Delta-G solvation = -4265.428861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58505 -40.49826 -38.47337 -38.43047 -37.36697 -34.79565 -34.57806 -33.91590 -32.04520 -30.35218 -29.84178 -29.69167 -28.01814 -25.31586 -23.17454 -23.06097 -22.71821 -22.23199 -21.50837 -20.68818 -19.28047 -19.14492 -18.98414 -18.02061 -17.27840 -16.99462 -16.54077 -15.88552 -15.72564 -15.44327 -15.10187 -14.82977 -14.44910 -14.30459 -13.85173 -13.71170 -13.41298 -13.22673 -13.19133 -12.95196 -12.85224 -12.69129 -12.23267 -12.12637 -11.82917 -11.66778 -11.55308 -11.00484 -10.98062 -10.91679 -10.84665 -10.82686 -10.50258 -10.29522 -10.09281 -10.00021 -9.92479 -9.74135 -9.68776 -9.17449 -8.96159 -7.02051 -5.86057 -3.15059 1.16421 1.42885 1.95990 2.20956 2.81973 2.95922 3.36615 3.42830 3.44719 3.47666 4.04250 4.26440 4.48360 4.48768 4.70086 4.75003 4.77985 4.91548 4.92595 5.10312 5.18947 5.36517 5.44063 5.46869 5.50315 5.53582 5.60467 5.67448 5.76347 5.89596 5.99798 6.02511 6.10513 6.13254 6.21951 6.31474 6.36667 6.54578 6.65880 6.71256 6.71845 6.98699 7.21164 7.61206 7.61327 7.86288 8.32712 9.44384 10.00974 10.35344 11.36641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003082 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.590872 B = 9082.295876 C =11000.842353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.087 0.913 13 C -0.110 4.110 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.129 4.129 17 C 0.156 3.844 18 H 0.088 0.912 19 N -0.705 5.705 20 C 0.498 3.502 21 O -0.529 6.529 22 C 0.079 3.921 23 N -0.496 5.496 24 C 0.419 3.581 25 O -0.437 6.437 26 N -0.295 5.295 27 N -0.297 5.297 28 C 0.416 3.584 29 O -0.433 6.433 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.403 0.597 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.417 0.583 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -17.715 -7.973 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.105 0.895 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.167 4.167 17 C 0.052 3.948 18 H 0.106 0.894 19 N -0.358 5.358 20 C 0.281 3.719 21 O -0.405 6.405 22 C -0.049 4.049 23 N -0.216 5.216 24 C 0.109 3.891 25 O -0.238 6.238 26 N -0.139 5.139 27 N -0.141 5.141 28 C 0.106 3.894 29 O -0.233 6.233 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.240 0.760 43 H 0.143 0.857 44 H 0.150 0.850 45 H 0.277 0.723 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.367 -18.954 -6.793 20.838 hybrid contribution -1.352 2.291 -0.797 2.777 sum 4.015 -16.664 -7.590 18.746 Atomic orbital electron populations 1.69658 1.05104 1.25638 1.57672 1.24732 0.95518 0.97710 1.02875 0.86138 0.78803 0.84109 0.77247 1.20560 1.21836 1.21814 1.19240 0.91006 0.84150 1.42822 0.91250 1.42371 1.05837 0.99862 1.89456 1.20626 0.92950 0.85416 0.97672 1.21649 0.97863 0.93185 0.99470 0.89457 1.21531 0.97646 0.99136 0.96432 1.21598 0.98088 0.94407 1.01843 1.21483 0.98601 0.97649 0.97474 1.21897 0.97916 0.98379 0.98544 1.21014 0.89719 0.94833 0.89234 0.89355 1.46042 1.23548 1.48809 1.17406 1.20503 0.82197 0.79807 0.89368 1.90784 1.74118 1.46304 1.29263 1.21766 0.87774 0.97459 0.97851 1.46586 1.14743 1.07599 1.52671 1.21309 0.82717 0.87697 0.97375 1.84903 1.79257 1.20305 1.39326 1.78375 1.21427 0.93307 1.20801 1.78343 1.00708 1.17013 1.18005 1.21226 0.90012 0.78583 0.99618 1.85014 1.43804 1.65460 1.28982 0.93505 0.78181 0.96580 0.96558 0.90126 0.92763 0.91815 0.92161 0.92355 0.92438 0.90829 0.91752 0.76039 0.85677 0.84983 0.72336 0.73261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.40 9.99 -15.06 -0.15 -6.55 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 9 N -0.73 -16.99 5.33 -59.91 -0.32 -17.31 16 10 C 0.16 2.85 5.42 -4.04 -0.02 2.83 16 11 C -0.10 -1.38 2.02 -90.62 -0.18 -1.56 16 12 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.35 4.90 -26.73 -0.13 -1.49 16 14 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 15 C -0.11 -1.05 5.77 -26.73 -0.15 -1.20 16 16 C -0.13 -1.35 5.60 -26.76 -0.15 -1.50 16 17 C 0.16 1.81 2.23 -67.96 -0.15 1.66 16 18 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 19 N -0.71 -6.71 3.61 -53.83 -0.19 -6.91 16 20 C 0.50 5.12 7.86 -10.99 -0.09 5.03 16 21 O -0.53 -7.73 16.09 5.56 0.09 -7.64 16 22 C 0.08 0.55 6.49 -5.19 -0.03 0.52 16 23 N -0.50 -4.95 2.25 -121.35 -0.27 -5.22 16 24 C 0.42 4.89 9.15 -88.82 -0.81 4.08 16 25 O -0.44 -4.08 13.57 -18.61 -0.25 -4.33 16 26 N -0.30 -4.23 12.72 29.65 0.38 -3.85 16 27 N -0.30 -4.16 12.72 29.65 0.38 -3.78 16 28 C 0.42 4.56 9.15 -88.81 -0.81 3.75 16 29 O -0.43 -3.34 13.58 -18.58 -0.25 -3.60 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.38 9.40 6.85 -40.82 -0.28 9.12 16 32 H 0.02 0.28 7.61 -51.93 -0.40 -0.12 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.24 7.18 -51.93 -0.37 0.87 16 35 H 0.05 0.60 6.50 -51.93 -0.34 0.26 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.49 7.60 -51.92 -0.39 0.09 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.40 3.18 6.67 -40.82 -0.27 2.91 16 43 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.42 2.41 9.06 45.56 0.41 2.82 16 46 H 0.41 0.61 9.06 45.56 0.41 1.02 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -37.11 381.35 -6.91 -44.02 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.97 Total: 8.85 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.94 Total: 3.71 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.69 Total: -63.39 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.42 Total: -15.57 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.11 -6.91 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483441873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.300 kcal (2) G-P(sol) polarization free energy of solvation -37.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds