Wall clock time and date at job start Tue Mar 31 2020 22:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48504 * 109.46615 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47374 * 299.99989 * 3 2 1 6 6 H 1.48495 * 109.47187 * 60.00378 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 H 1.08995 * 109.47026 * 305.00375 * 11 10 9 13 13 C 1.53005 * 109.46813 * 65.00101 * 11 10 9 14 14 C 1.52998 * 109.46813 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47470 * 299.99681 * 14 13 11 16 16 C 1.53001 * 109.46855 * 59.99798 * 15 14 13 17 17 C 1.52994 * 109.47095 * 184.99775 * 11 10 9 18 18 H 1.09000 * 109.47321 * 60.00349 * 17 11 10 19 19 N 1.46504 * 109.47434 * 300.00289 * 17 11 10 20 20 C 1.34769 * 120.00345 * 155.00112 * 19 17 11 21 21 O 1.21280 * 120.00224 * 359.97438 * 20 19 17 22 22 C 1.50704 * 119.99872 * 179.97438 * 20 19 17 23 23 N 1.46505 * 109.46733 * 179.97438 * 22 20 19 24 24 C 1.36368 * 125.96784 * 269.68554 * 23 22 20 25 25 O 1.35637 * 125.98377 * 0.04371 * 24 23 22 26 26 N 1.30902 * 108.02633 * 179.88677 * 24 23 22 27 27 N 1.40111 * 107.93795 * 0.38066 * 26 24 23 28 28 C 1.30906 * 107.94172 * 359.75532 * 27 26 24 29 29 O 1.35626 * 125.98790 * 180.02562 * 28 27 26 30 30 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 32 32 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 33 33 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 34 34 H 1.09000 * 109.47034 * 299.99245 * 13 11 10 35 35 H 1.08991 * 109.47325 * 59.99870 * 13 11 10 36 36 H 1.09008 * 109.47327 * 60.00103 * 14 13 11 37 37 H 1.09005 * 109.47195 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.47559 * 179.97438 * 15 14 13 39 39 H 1.09008 * 109.47190 * 300.00505 * 15 14 13 40 40 H 1.08999 * 109.47210 * 60.00494 * 16 15 14 41 41 H 1.09001 * 109.47251 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99280 * 335.00098 * 19 17 11 43 43 H 1.08996 * 109.47346 * 299.99760 * 22 20 19 44 44 H 1.08999 * 109.47096 * 59.99924 * 22 20 19 45 45 H 0.96700 * 113.99601 * 89.99501 * 25 24 23 46 46 H 0.96700 * 114.00135 * 269.97705 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 1 0.3835 -4.7108 0.8508 13 6 0.2639 -4.8143 -1.2977 14 6 -0.7298 -5.9777 -1.2910 15 6 0.0321 -7.2985 -1.1656 16 6 0.8324 -7.3038 0.1384 17 6 1.8256 -6.1408 0.1321 18 1 2.3957 -6.1446 1.0611 19 7 2.7404 -6.2871 -1.0028 20 6 3.8402 -7.0573 -0.8869 21 8 4.0730 -7.6289 0.1571 22 6 4.7809 -7.2082 -2.0546 23 7 5.8899 -8.0883 -1.6776 24 6 7.0735 -7.6942 -1.1269 25 8 7.4298 -6.4192 -0.8316 26 7 7.8043 -8.7623 -0.9302 27 7 7.0741 -9.8725 -1.3743 28 6 5.9209 -9.4440 -1.8218 29 8 4.9306 -10.2135 -2.3380 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 0.0039 32 1 2.6812 -3.7165 -0.8930 33 1 2.6887 -3.7123 0.8869 34 1 -0.2786 -3.8732 -1.3872 35 1 0.9445 -4.9232 -2.1420 36 1 -1.4105 -5.8693 -0.4465 37 1 -1.3002 -5.9737 -2.2198 38 1 -0.6759 -8.1273 -1.1604 39 1 0.7128 -7.4069 -2.0101 40 1 0.1518 -7.1955 0.9829 41 1 1.3755 -8.2447 0.2276 42 1 2.5544 -5.8296 -1.8377 43 1 4.2448 -7.6402 -2.8996 44 1 5.1725 -6.2302 -2.3344 45 1 7.1872 -6.1400 0.0619 46 1 4.9910 -10.3429 -3.2944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483441873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:40 Heat of formation + Delta-G solvation = -52.563890 kcal Electronic energy + Delta-G solvation = -30453.713316 eV Core-core repulsion = 26186.816941 eV Total energy + Delta-G solvation = -4266.896376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38321 -41.42277 -39.41373 -39.15223 -38.05898 -36.46128 -35.36801 -34.78991 -33.71064 -31.26531 -31.18794 -30.69748 -28.80882 -26.87109 -24.68065 -23.87356 -23.70850 -23.08814 -22.35199 -21.87942 -20.12218 -19.89182 -19.79938 -19.22782 -18.64704 -17.84752 -17.33940 -16.87885 -16.54842 -16.44610 -16.28369 -16.10360 -15.49871 -15.24918 -15.13458 -14.94980 -14.65867 -14.53718 -14.07086 -13.91260 -13.59117 -13.39443 -13.35880 -13.11883 -12.98755 -12.87723 -12.73791 -12.58408 -12.54004 -12.08008 -11.91991 -11.84309 -11.80311 -11.60495 -11.41328 -11.19906 -11.04150 -10.85775 -10.76155 -10.55243 -10.08339 -8.97645 -7.95010 -5.22752 0.38901 0.72816 1.12461 1.43471 1.47566 1.48798 1.57788 2.03937 2.21590 2.55785 2.84141 3.39311 3.47007 3.49783 3.64434 3.79237 3.84058 4.05439 4.09419 4.15380 4.23114 4.25705 4.43227 4.48328 4.48868 4.58348 4.65296 4.66757 4.74194 4.91281 5.02065 5.08302 5.17039 5.22064 5.27632 5.32029 5.33828 5.45523 5.49347 5.54111 5.59081 6.18390 6.27641 6.38056 6.47105 6.77800 7.09304 7.34960 8.11299 8.33740 9.28421 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.003082 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.590872 B = 9082.295876 C =11000.842353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.741 5.741 10 C 0.162 3.838 11 C -0.089 4.089 12 H 0.072 0.928 13 C -0.104 4.104 14 C -0.116 4.116 15 C -0.106 4.106 16 C -0.123 4.123 17 C 0.167 3.833 18 H 0.065 0.935 19 N -0.696 5.696 20 C 0.500 3.500 21 O -0.575 6.575 22 C 0.081 3.919 23 N -0.492 5.492 24 C 0.422 3.578 25 O -0.436 6.436 26 N -0.338 5.338 27 N -0.342 5.342 28 C 0.429 3.571 29 O -0.433 6.433 30 H 0.250 0.750 31 H 0.375 0.625 32 H 0.032 0.968 33 H 0.003 0.997 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.170 0.830 44 H 0.157 0.843 45 H 0.431 0.569 46 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -18.365 -9.987 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.035 3.965 11 C -0.108 4.108 12 H 0.090 0.910 13 C -0.142 4.142 14 C -0.153 4.153 15 C -0.144 4.144 16 C -0.161 4.161 17 C 0.061 3.939 18 H 0.083 0.917 19 N -0.349 5.349 20 C 0.285 3.715 21 O -0.455 6.455 22 C -0.045 4.045 23 N -0.212 5.212 24 C 0.111 3.889 25 O -0.239 6.239 26 N -0.182 5.182 27 N -0.186 5.186 28 C 0.118 3.882 29 O -0.237 6.237 30 H 0.059 0.941 31 H 0.208 0.792 32 H 0.050 0.950 33 H 0.021 0.979 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.187 0.813 44 H 0.175 0.825 45 H 0.293 0.707 46 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 5.372 -19.621 -8.851 22.185 hybrid contribution -1.381 2.463 -0.155 2.828 sum 3.990 -17.159 -9.006 19.785 Atomic orbital electron populations 1.69800 1.06476 1.25918 1.59606 1.25479 0.96311 1.00843 1.03855 0.85161 0.78312 0.80230 0.76584 1.19132 1.21961 1.22459 1.19618 0.91402 0.85405 1.40896 0.90840 1.42565 1.05662 1.00981 1.89241 1.20770 0.93563 0.84722 0.97425 1.21458 0.96933 0.92551 0.99886 0.90991 1.21455 0.98026 0.98582 0.96119 1.21542 0.97541 0.93943 1.02297 1.21440 0.98761 0.97228 0.96937 1.21828 0.97567 0.97132 0.99609 1.20721 0.89849 0.94076 0.89230 0.91653 1.45905 1.23166 1.48714 1.17146 1.21045 0.82157 0.78670 0.89623 1.90782 1.75110 1.48176 1.31398 1.22094 0.86547 0.98690 0.97163 1.46616 1.14842 1.07575 1.52188 1.21352 0.83081 0.87865 0.96643 1.84879 1.79409 1.19137 1.40507 1.78242 1.23078 0.94323 1.22561 1.78221 1.02515 1.17680 1.20153 1.21268 0.89579 0.79100 0.98205 1.84988 1.42398 1.64744 1.31530 0.94062 0.79221 0.94963 0.97904 0.93450 0.90832 0.92598 0.90777 0.91043 0.90871 0.91040 0.92438 0.74660 0.81297 0.82549 0.70677 0.69980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.88 13.06 21.65 0.28 -56.59 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.24 -12.75 9.99 84.03 0.84 -11.91 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.74 -34.61 5.33 -343.44 -1.83 -36.44 16 10 C 0.16 5.61 5.42 86.38 0.47 6.08 16 11 C -0.09 -2.34 2.02 -10.79 -0.02 -2.36 16 12 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.10 -2.41 4.90 30.60 0.15 -2.26 16 14 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 15 C -0.11 -1.60 5.77 30.59 0.18 -1.43 16 16 C -0.12 -2.35 5.60 30.58 0.17 -2.18 16 17 C 0.17 3.64 2.23 44.97 0.10 3.74 16 18 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 19 N -0.70 -11.37 3.61 -442.63 -1.60 -12.97 16 20 C 0.50 8.99 7.86 87.66 0.69 9.68 16 21 O -0.58 -16.18 16.09 -3.03 -0.05 -16.22 16 22 C 0.08 0.82 6.49 85.63 0.56 1.37 16 23 N -0.49 -8.73 2.25 -759.25 -1.71 -10.44 16 24 C 0.42 9.41 9.15 179.72 1.65 11.05 16 25 O -0.44 -7.56 13.57 -89.51 -1.22 -8.77 16 26 N -0.34 -9.72 12.72 -173.65 -2.21 -11.93 16 27 N -0.34 -9.49 12.72 -173.66 -2.21 -11.70 16 28 C 0.43 8.69 9.15 179.72 1.65 10.33 16 29 O -0.43 -5.45 13.58 -89.39 -1.21 -6.66 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.38 18.73 6.85 -92.70 -0.64 18.10 16 32 H 0.03 1.04 7.61 -2.39 -0.02 1.02 16 33 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.05 1.44 7.18 -2.39 -0.02 1.43 16 35 H 0.07 1.40 6.50 -2.39 -0.02 1.38 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.91 7.60 -2.38 -0.02 0.89 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 4.94 6.67 -92.70 -0.62 4.32 16 43 H 0.17 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.43 4.54 9.06 -74.06 -0.67 3.87 16 46 H 0.44 -0.26 9.06 -74.06 -0.67 -0.93 16 Total: -1.00 -82.79 381.35 -4.18 -86.97 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -1.53 Total: 21.56 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 7.07 Total: 16.69 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -9.27 Total: -140.08 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -2.48 Total: -31.66 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -82.79 -4.18 -86.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483441873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.407 kcal (2) G-P(sol) polarization free energy of solvation -82.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds