Wall clock time and date at job start Tue Mar 31 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47346 * 299.99841 * 3 2 1 6 6 H 1.48503 * 109.46960 * 59.99674 * 3 2 1 7 7 C 1.38816 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99909 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.47140 * 324.99754 * 10 9 7 12 12 C 1.53004 * 109.46943 * 205.00011 * 10 9 7 13 13 N 1.46499 * 109.47198 * 54.99919 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21713 * 120.00187 * 359.72121 * 14 13 12 16 16 C 1.46586 * 119.99782 * 179.72446 * 14 13 12 17 17 C 1.38044 * 126.00603 * 179.68816 * 16 14 13 18 18 C 1.39369 * 107.44226 * 179.84181 * 17 16 14 19 19 C 1.37822 * 107.64978 * 0.42006 * 18 17 16 20 20 C 1.47812 * 125.82048 * 179.73669 * 19 18 17 21 21 C 1.39598 * 120.14313 * 179.72209 * 20 19 18 22 22 C 1.37953 * 119.84751 * 179.75070 * 21 20 19 23 23 C 1.38363 * 120.14880 * 0.52740 * 22 21 20 24 24 C 1.38367 * 120.29108 * 359.74736 * 23 22 21 25 25 C 1.37948 * 120.15378 * 359.97438 * 24 23 22 26 26 N 1.36410 * 108.35275 * 359.73765 * 19 18 17 27 27 H 0.96998 * 125.71283 * 179.97438 * 26 19 18 28 28 C 1.52995 * 109.47091 * 85.00050 * 10 9 7 29 29 C 1.52999 * 117.50225 * 8.74581 * 28 10 9 30 30 C 1.52999 * 117.49761 * 300.08359 * 28 10 9 31 31 H 0.96996 * 119.99816 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00310 * 359.97438 * 9 7 2 33 33 H 1.09009 * 109.46730 * 294.99706 * 12 10 9 34 34 H 1.08998 * 109.46846 * 175.00251 * 12 10 9 35 35 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 36 36 H 1.08003 * 126.28155 * 359.96870 * 17 16 14 37 37 H 1.08002 * 126.17623 * 180.15597 * 18 17 16 38 38 H 1.07998 * 120.07139 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.92636 * 180.29936 * 22 21 20 40 40 H 1.07994 * 119.85533 * 179.76872 * 23 22 21 41 41 H 1.08004 * 119.92048 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.07788 * 180.02562 * 25 24 23 43 43 H 1.09006 * 115.55266 * 154.41988 * 28 10 9 44 44 H 1.08993 * 117.49781 * 359.97438 * 29 28 10 45 45 H 1.09000 * 117.50138 * 145.02405 * 29 28 10 46 46 H 1.09009 * 117.50018 * 214.98040 * 30 28 10 47 47 H 1.08999 * 117.50301 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 1.1812 -4.7524 -0.6082 13 7 0.7356 -4.3363 -1.9403 14 6 -0.0579 -5.1463 -2.6689 15 8 -0.4001 -6.2256 -2.2222 16 6 -0.5087 -4.7274 -3.9993 17 6 -1.3142 -5.4572 -4.8503 18 6 -1.5026 -4.6959 -6.0024 19 6 -0.8038 -3.5186 -5.8443 20 6 -0.7240 -2.4208 -6.8308 21 6 0.0170 -1.2730 -6.5440 22 6 0.0914 -0.2543 -7.4713 23 6 -0.5751 -0.3637 -8.6788 24 6 -1.3160 -1.4962 -8.9670 25 6 -1.3941 -2.5247 -8.0510 26 7 -0.1982 -3.5394 -4.6222 27 1 0.3582 -2.8353 -4.2539 28 6 2.4207 -4.0350 1.4391 29 6 1.8113 -3.1975 2.5652 30 6 3.2977 -3.0593 2.2264 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 0.3131 -4.9200 0.0295 34 1 1.7562 -5.6749 -0.6890 35 1 1.0081 -3.4761 -2.2960 36 1 -1.7250 -6.4373 -4.6577 37 1 -2.0869 -4.9795 -6.8653 38 1 0.5343 -1.1847 -5.6001 39 1 0.6683 0.6322 -7.2526 40 1 -0.5166 0.4383 -9.3997 41 1 -1.8342 -1.5751 -9.9113 42 1 -1.9724 -3.4083 -8.2774 43 1 2.5619 -5.1000 1.6237 44 1 1.1523 -2.3769 2.2820 45 1 1.5519 -3.7114 3.4908 46 1 4.0155 -3.4823 2.9293 47 1 3.6166 -2.1482 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490744198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:09 Heat of formation + Delta-G solvation = 51.235369 kcal Electronic energy + Delta-G solvation = -28425.504167 eV Core-core repulsion = 24573.958128 eV Total energy + Delta-G solvation = -3851.546039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36031 -40.45844 -39.58164 -39.04409 -36.00403 -35.12531 -33.13564 -32.73090 -32.37590 -31.51698 -30.23013 -28.79277 -25.78759 -24.91662 -23.86071 -23.57586 -23.00163 -22.25581 -21.37955 -21.00741 -20.61181 -19.81658 -19.10999 -17.83479 -17.08356 -16.92484 -16.62142 -16.36535 -16.29089 -15.77857 -15.66168 -15.49419 -15.12572 -15.00661 -14.84081 -14.52110 -14.43916 -14.27834 -13.76759 -13.63272 -13.54192 -13.41610 -12.98515 -12.92510 -12.68942 -12.61890 -12.22372 -12.13102 -11.95693 -11.91634 -11.63601 -11.32327 -11.07532 -10.86985 -10.64552 -10.48081 -10.15386 -10.06010 -9.90027 -9.03755 -8.66064 -7.92157 -5.20161 -0.21180 0.46620 0.72588 1.44280 1.48478 1.54782 1.80974 1.94199 2.14975 2.34508 2.54629 2.96332 3.11342 3.42907 3.59165 3.81109 3.83427 3.90590 3.97024 4.04645 4.24531 4.26448 4.28188 4.30771 4.39476 4.46988 4.53991 4.55938 4.59615 4.64757 4.86464 4.89243 4.95432 5.04469 5.11173 5.12984 5.15646 5.19946 5.34949 5.41160 5.47724 5.51232 5.59050 5.64040 5.66526 5.79125 5.86979 6.02985 6.26869 6.27348 6.49867 7.08118 7.36110 8.06042 8.32012 9.30046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.003475 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.757661 B = 8055.117677 C =10674.328371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.063 4.063 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.304 1.304 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.193 3.807 11 H 0.061 0.939 12 C 0.128 3.872 13 N -0.710 5.710 14 C 0.583 3.417 15 O -0.573 6.573 16 C -0.065 4.065 17 C -0.113 4.113 18 C -0.187 4.187 19 C 0.084 3.916 20 C -0.041 4.041 21 C -0.137 4.137 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.102 4.102 26 N -0.526 5.526 27 H 0.420 0.580 28 C -0.168 4.168 29 C -0.173 4.173 30 C -0.169 4.169 31 H 0.247 0.753 32 H 0.373 0.627 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.404 0.596 36 H 0.155 0.845 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -5.766 -16.235 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.225 1.225 6 H -0.232 1.232 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.083 3.917 11 H 0.079 0.921 12 C 0.003 3.997 13 N -0.359 5.359 14 C 0.372 3.628 15 O -0.453 6.453 16 C -0.179 4.179 17 C -0.139 4.139 18 C -0.210 4.210 19 C -0.034 4.034 20 C -0.042 4.042 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.120 4.120 26 N -0.122 5.122 27 H 0.259 0.741 28 C -0.190 4.190 29 C -0.210 4.210 30 C -0.206 4.206 31 H 0.056 0.944 32 H 0.206 0.794 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.240 0.760 36 H 0.173 0.827 37 H 0.193 0.807 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.167 0.833 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.601 -6.314 -15.765 16.993 hybrid contribution 0.391 2.025 0.776 2.203 sum 0.992 -4.289 -14.989 15.622 Atomic orbital electron populations 1.69804 1.06302 1.25457 1.59817 1.25273 0.95905 1.00085 1.04317 0.85355 0.78524 0.81383 0.76189 1.19210 1.22539 1.23170 1.19451 0.91111 0.84475 1.39948 0.90525 1.42546 1.05240 1.00291 1.87974 1.20135 0.93887 0.84763 0.92881 0.92086 1.21541 0.98348 0.97663 0.82107 1.45836 1.50480 1.21402 1.18231 1.17278 0.78022 0.83934 0.83550 1.90777 1.58998 1.23438 1.72126 1.20396 1.11161 0.90379 0.95967 1.21408 0.98901 1.00405 0.93208 1.21375 1.05712 0.93242 1.00701 1.19531 1.00314 0.97275 0.86241 1.18233 1.00085 0.91979 0.93893 1.21323 0.99911 0.94277 1.00021 1.21311 1.00018 0.98725 0.94283 1.21622 0.96434 0.98900 0.96831 1.21474 0.98690 0.92933 1.00216 1.21419 0.98435 1.00451 0.91718 1.42119 1.39763 1.15971 1.14307 0.74095 1.23043 1.05093 0.96874 0.93949 1.22770 0.96770 1.03051 0.98454 1.22846 0.93363 1.01126 1.03281 0.94436 0.79434 0.92718 0.89761 0.76026 0.82707 0.80669 0.87081 0.84760 0.83421 0.82588 0.83264 0.86575 0.90495 0.89109 0.88010 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.89 13.06 21.65 0.28 -54.61 16 2 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 3 Si 0.95 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 7 C -0.22 -10.57 8.15 84.04 0.69 -9.89 16 8 H 0.08 3.63 6.91 -2.91 -0.02 3.61 16 9 N -0.72 -31.36 3.08 -322.94 -0.99 -32.36 16 10 C 0.19 6.73 2.86 44.99 0.13 6.85 16 11 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 12 C 0.13 4.20 5.22 86.38 0.45 4.65 16 13 N -0.71 -23.69 5.38 -467.14 -2.52 -26.21 16 14 C 0.58 20.61 7.78 86.42 0.67 21.28 16 15 O -0.57 -23.19 16.87 -4.39 -0.07 -23.26 16 16 C -0.07 -2.04 7.04 40.36 0.28 -1.75 16 17 C -0.11 -3.13 10.60 22.50 0.24 -2.89 16 18 C -0.19 -4.35 10.22 22.44 0.23 -4.12 16 19 C 0.08 2.12 6.93 40.87 0.28 2.41 16 20 C -0.04 -0.93 5.87 -20.09 -0.12 -1.05 16 21 C -0.14 -3.18 9.70 22.53 0.22 -2.96 16 22 C -0.13 -2.46 10.03 22.23 0.22 -2.24 16 23 C -0.12 -1.86 10.04 22.33 0.22 -1.64 16 24 C -0.12 -1.66 10.03 22.23 0.22 -1.43 16 25 C -0.10 -1.76 9.57 22.53 0.22 -1.55 16 26 N -0.53 -14.60 5.90 -172.30 -1.02 -15.62 16 27 H 0.42 11.15 7.24 -92.71 -0.67 10.48 16 28 C -0.17 -5.42 5.70 -10.80 -0.06 -5.48 16 29 C -0.17 -6.23 9.74 30.62 0.30 -5.93 16 30 C -0.17 -5.59 9.87 30.62 0.30 -5.29 16 31 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.37 18.39 7.80 -92.71 -0.72 17.67 16 33 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.40 13.39 7.24 -92.71 -0.67 12.72 16 36 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.18 2.83 7.26 -2.91 -0.02 2.81 16 38 H 0.11 2.66 7.14 -2.91 -0.02 2.64 16 39 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.15 1.88 6.98 -2.91 -0.02 1.86 16 43 H 0.12 3.14 8.11 -2.38 -0.02 3.12 16 44 H 0.08 3.47 6.68 -2.39 -0.02 3.45 16 45 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 47 H 0.08 2.99 6.22 -2.39 -0.01 2.98 16 Total: -1.00 -63.86 392.80 1.64 -62.22 By element: Atomic # 1 Polarization: 59.27 SS G_CDS: -1.04 Total: 58.23 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.96 Total: -13.87 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -4.24 Total: -128.79 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.07 Total: -23.26 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -63.86 1.64 -62.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490744198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.457 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds