Wall clock time and date at job start Tue Mar 31 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.88800 * 302.57941 * 11 10 9 13 13 C 1.55156 * 111.00983 * 178.64956 * 11 10 9 14 14 C 1.54317 * 102.94471 * 206.42770 * 13 11 10 15 15 N 1.47022 * 107.27514 * 22.19305 * 14 13 11 16 16 C 1.34770 * 125.65163 * 181.02456 * 15 14 13 17 17 O 1.21735 * 120.00083 * 180.02562 * 16 15 14 18 18 C 1.46396 * 120.00339 * 0.03938 * 16 15 14 19 19 N 1.37634 * 126.32056 * 359.69176 * 18 16 15 20 20 H 0.96990 * 125.55242 * 359.97438 * 19 18 16 21 21 C 1.35645 * 108.89605 * 179.88555 * 19 18 16 22 22 C 1.35126 * 109.22075 * 0.37996 * 21 19 18 23 23 C 1.39089 * 126.33132 * 180.02562 * 18 16 15 24 24 C 1.48181 * 126.63159 * 359.93046 * 23 18 16 25 25 C 1.39453 * 120.13117 * 309.72460 * 24 23 18 26 26 C 1.37985 * 119.86312 * 179.74412 * 25 24 23 27 27 C 1.38350 * 120.13542 * 0.51200 * 26 25 24 28 28 C 1.38344 * 120.25915 * 359.76442 * 27 26 25 29 29 C 1.37980 * 120.13630 * 359.97438 * 28 27 26 30 30 C 1.47430 * 108.70052 * 1.05818 * 15 14 13 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 34 34 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 35 35 H 1.09004 * 110.71807 * 324.79353 * 13 11 10 36 36 H 1.09005 * 110.71781 * 88.06061 * 13 11 10 37 37 H 1.09000 * 109.88095 * 262.77886 * 14 13 11 38 38 H 1.09003 * 110.01129 * 141.68081 * 14 13 11 39 39 H 1.08000 * 125.38960 * 180.12548 * 21 19 18 40 40 H 1.08002 * 126.10151 * 179.76442 * 22 21 19 41 41 H 1.07991 * 120.06525 * 359.97438 * 25 24 23 42 42 H 1.07996 * 119.93494 * 180.22869 * 26 25 24 43 43 H 1.07990 * 119.86853 * 179.74532 * 27 26 25 44 44 H 1.08005 * 119.92912 * 180.02562 * 28 27 26 45 45 H 1.08003 * 120.07190 * 179.97438 * 29 28 27 46 46 H 1.09000 * 110.37078 * 217.03403 * 30 15 14 47 47 H 1.09003 * 110.45837 * 94.75719 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3951 -4.7586 0.8595 13 6 1.8033 -6.1834 -0.0329 14 6 0.7719 -7.1192 -0.6977 15 7 -0.1563 -6.2731 -1.4620 16 6 -1.2152 -6.7108 -2.1716 17 8 -1.9181 -5.9163 -2.7688 18 6 -1.5204 -8.1416 -2.2240 19 7 -0.8142 -9.1489 -1.6068 20 1 -0.0229 -9.0290 -1.0589 21 6 -1.4063 -10.3365 -1.8879 22 6 -2.4782 -10.1221 -2.6822 23 6 -2.5736 -8.7349 -2.9120 24 6 -3.5984 -8.0422 -3.7279 25 6 -4.2904 -6.9509 -3.2036 26 6 -5.2398 -6.3067 -3.9701 27 6 -5.5134 -6.7480 -5.2525 28 6 -4.8342 -7.8336 -5.7759 29 6 -3.8788 -8.4826 -5.0210 30 6 0.2636 -4.8666 -1.3243 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3880 0.0005 33 1 2.6849 -3.7145 -0.8894 34 1 2.6848 -3.7144 0.8905 35 1 2.7085 -6.1164 -0.6365 36 1 2.0360 -6.5213 0.9770 37 1 0.2257 -7.6717 0.0668 38 1 1.2769 -7.8147 -1.3680 39 1 -1.0715 -11.3011 -1.5361 40 1 -3.1431 -10.8789 -3.0718 41 1 -4.0809 -6.6084 -2.2011 42 1 -5.7738 -5.4591 -3.5665 43 1 -6.2603 -6.2431 -5.8471 44 1 -5.0518 -8.1734 -6.7778 45 1 -3.3495 -9.3303 -5.4305 46 1 -0.6078 -4.2146 -1.2645 47 1 0.8982 -4.5748 -2.1612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491848592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:56 Heat of formation + Delta-G solvation = 59.049431 kcal Electronic energy + Delta-G solvation = -28624.529197 eV Core-core repulsion = 24773.322001 eV Total energy + Delta-G solvation = -3851.207196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62942 -39.54980 -38.71674 -37.51644 -34.76973 -32.84813 -32.20170 -30.82158 -30.58888 -30.23621 -28.82221 -28.53387 -25.61582 -24.08925 -22.88908 -22.45128 -22.15074 -21.38034 -20.80519 -20.04668 -19.38023 -17.96808 -17.04024 -16.62790 -16.29309 -16.14987 -15.33473 -15.06498 -14.92612 -14.64502 -14.42600 -14.01481 -13.76115 -13.75581 -13.38296 -13.28492 -13.20471 -13.07676 -12.89367 -12.72605 -12.52427 -12.31687 -12.19617 -11.88001 -11.37579 -11.10860 -10.96342 -10.89480 -10.71117 -10.67190 -10.51723 -10.08332 -10.00558 -9.70188 -9.43708 -8.89799 -8.77125 -8.74398 -8.58470 -8.04414 -6.95002 -5.76817 -3.06812 1.01656 1.57842 1.65279 2.55528 2.77513 3.01665 3.31975 3.43534 3.48395 3.50691 3.97073 4.34747 4.42969 4.56070 4.65968 4.70817 4.77862 4.90666 5.01313 5.09352 5.10517 5.19833 5.22115 5.24372 5.48180 5.53193 5.57160 5.60269 5.68443 5.74654 5.84577 5.87742 5.91637 6.05009 6.09481 6.17660 6.18689 6.33141 6.33769 6.41042 6.55512 6.62566 6.64426 6.68866 6.75934 6.81319 7.11047 7.13288 7.47618 7.68557 8.16423 8.41078 9.52427 10.08515 10.42729 11.45688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.002699 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.044257 B =10372.405388 C =12322.894171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.085 0.915 13 C -0.123 4.123 14 C 0.090 3.910 15 N -0.620 5.620 16 C 0.594 3.406 17 O -0.510 6.510 18 C -0.032 4.032 19 N -0.543 5.543 20 H 0.419 0.581 21 C 0.017 3.983 22 C -0.195 4.195 23 C -0.045 4.045 24 C -0.019 4.019 25 C -0.063 4.063 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.131 4.131 29 C -0.106 4.106 30 C 0.118 3.882 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.172 0.828 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -25.675 -4.610 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.034 4.034 15 N -0.354 5.354 16 C 0.384 3.616 17 O -0.385 6.385 18 C -0.146 4.146 19 N -0.143 5.143 20 H 0.261 0.739 21 C -0.118 4.118 22 C -0.219 4.219 23 C -0.054 4.054 24 C -0.020 4.020 25 C -0.082 4.082 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.149 4.149 29 C -0.124 4.124 30 C -0.003 4.003 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.189 0.811 40 H 0.162 0.838 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.105 0.895 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.451 -25.071 -4.892 25.929 hybrid contribution 0.684 0.861 0.343 1.151 sum -3.767 -24.211 -4.549 24.921 Atomic orbital electron populations 1.69662 1.05106 1.25758 1.57339 1.24758 0.95521 0.97743 1.02809 0.86190 0.78651 0.83848 0.77479 1.21720 1.20761 1.21726 1.19192 0.90994 0.84092 1.43177 0.91169 1.42357 1.05916 0.99892 1.89574 1.20575 0.92661 0.84802 0.98227 1.22601 0.97862 0.94622 0.97395 0.89619 1.22636 0.97540 0.94654 1.01269 1.22196 0.91815 0.94715 0.94694 1.48512 1.27659 1.09505 1.49746 1.16638 0.79893 0.85890 0.79219 1.90930 1.48560 1.54898 1.44135 1.20467 0.99037 0.88183 1.06904 1.42642 1.25047 1.06217 1.40397 0.73874 1.21926 0.97040 0.89647 1.03224 1.20892 1.00917 0.94893 1.05213 1.18558 0.94821 0.92685 0.99346 1.18076 0.94991 0.95690 0.93205 1.21137 0.93680 0.93340 1.00016 1.21065 0.98583 0.99836 0.94637 1.21148 0.99951 0.97012 0.95753 1.20955 0.97398 0.96901 0.99615 1.21080 0.97991 0.99987 0.93390 1.22342 0.99797 0.80540 0.97606 0.93422 0.78165 0.96012 0.95788 0.89924 0.89700 0.91774 0.91783 0.81109 0.83774 0.86273 0.86173 0.86480 0.86386 0.86357 0.89497 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.24 5.45 -59.91 -0.33 -18.57 16 10 C 0.17 3.12 5.71 -4.04 -0.02 3.10 16 11 C -0.11 -1.57 3.11 -88.47 -0.27 -1.84 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.12 -1.26 6.42 -24.90 -0.16 -1.42 16 14 C 0.09 0.86 5.11 -3.07 -0.02 0.85 16 15 N -0.62 -8.74 3.33 -172.15 -0.57 -9.31 16 16 C 0.59 9.44 7.79 -12.98 -0.10 9.34 16 17 O -0.51 -9.88 13.68 5.16 0.07 -9.81 16 18 C -0.03 -0.42 6.91 -81.66 -0.56 -0.99 16 19 N -0.54 -4.92 5.61 -9.24 -0.05 -4.97 16 20 H 0.42 2.79 4.91 -40.82 -0.20 2.59 16 21 C 0.02 0.13 11.86 -16.97 -0.20 -0.07 16 22 C -0.20 -1.91 10.73 -39.67 -0.43 -2.33 16 23 C -0.05 -0.59 5.67 -104.48 -0.59 -1.18 16 24 C -0.02 -0.27 5.27 -104.91 -0.55 -0.82 16 25 C -0.06 -0.94 7.63 -39.22 -0.30 -1.24 16 26 C -0.12 -1.65 10.03 -39.63 -0.40 -2.04 16 27 C -0.12 -1.43 10.04 -39.50 -0.40 -1.82 16 28 C -0.13 -1.48 10.03 -39.64 -0.40 -1.88 16 29 C -0.11 -1.30 9.74 -39.22 -0.38 -1.68 16 30 C 0.12 1.95 6.08 -2.52 -0.02 1.94 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.38 10.17 7.53 -40.82 -0.31 9.86 16 33 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.51 7.11 -51.93 -0.37 0.14 16 38 H 0.06 0.49 7.21 -51.93 -0.37 0.12 16 39 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.87 7.36 -52.49 -0.39 1.48 16 42 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 45 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 46 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 47 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 LS Contribution 384.83 15.07 5.80 5.80 Total: -1.00 -34.79 384.83 -11.09 -45.88 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.66 Total: 10.64 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -5.05 Total: -9.47 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.23 Total: -60.51 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.79 -11.09 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491848592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.930 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds